Hello,
I have been using FreeSurfer on Dell Linux computer (64 bit) with Fedore Core 4 by downloading [freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.1-full] and had no problems.
Recently our lab changed Linux distribution from Fedore Core 4 to 5 and I got the following message when I ran test commands. ---------------------------------- tksurfer test1 rh pial
surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs surfer: Reading header info from /projects/fmri/fs_data/test1/mri/T1.mgz surfer: vertices=147407, faces=294810 surfer: single buffered window
Received X error! Error code : 165 Request code : 145 Minor code : 2
Error text : 'GLXBadLargeRequest'
(repeat) ----------------------------------- The other test commands for tkmedit (tkmedit test1 orig.mgz, tkmedit test1 norm.mgz -segmentation mri/aseg.mgz ...) displayed the results correctly.
If you could give me any suggestion what to do (without going back to FC4 ... I have no control over it), it would be much appreciated.
Thank you,
Ryu Hashimoto
Ryu,
I haven't encountered this error myself, nor do I have experience with FC5, however, googling 'GLXBadLargeRequest' turns-up a post that this 'occurs when when you're remotely displaying a 64-bit VMD session to a 32-bit implementation of OpenGL64-bit'. Perhaps FC5 has a 32bit OpenGL implementation, in which case, you could try running the 32-bit version of the freesurfer distribution (which will run on 64bit systems). That would be freesurfer-Linux-centos4-stable-pub-v3.0.1-full.
Nick
On Mon, 2006-04-17 at 11:15 -0400, Ryu-Ichiro Hashimoto wrote:
Hello,
I have been using FreeSurfer on Dell Linux computer (64 bit) with Fedore Core 4 by downloading [freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.1-full] and had no problems.
Recently our lab changed Linux distribution from Fedore Core 4 to 5 and I got the following message when I ran test commands.
tksurfer test1 rh pial
surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs surfer: Reading header info from /projects/fmri/fs_data/test1/mri/T1.mgz surfer: vertices=147407, faces=294810 surfer: single buffered window
Received X error! Error code : 165 Request code : 145 Minor code : 2
Error text : 'GLXBadLargeRequest'(repeat)
The other test commands for tkmedit (tkmedit test1 orig.mgz, tkmedit test1 norm.mgz -segmentation mri/aseg.mgz ...) displayed the results correctly.
If you could give me any suggestion what to do (without going back to FC4 ... I have no control over it), it would be much appreciated.
Thank you,
Ryu Hashimoto
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hello Nick,
Thank you very much for your helpful suggestion. I will try it out and report the results shortly.
Ryu
Nick Schmansky wrote:
Ryu,
I haven't encountered this error myself, nor do I have experience with FC5, however, googling 'GLXBadLargeRequest' turns-up a post that this 'occurs when when you're remotely displaying a 64-bit VMD session to a 32-bit implementation of OpenGL64-bit'. Perhaps FC5 has a 32bit OpenGL implementation, in which case, you could try running the 32-bit version of the freesurfer distribution (which will run on 64bit systems). That would be freesurfer-Linux-centos4-stable-pub-v3.0.1-full.
Nick
On Mon, 2006-04-17 at 11:15 -0400, Ryu-Ichiro Hashimoto wrote:
Hello,
I have been using FreeSurfer on Dell Linux computer (64 bit) with Fedore Core 4 by downloading [freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.1-full] and had no problems.
Recently our lab changed Linux distribution from Fedore Core 4 to 5 and I got the following message when I ran test commands.
tksurfer test1 rh pial
surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs surfer: Reading header info from /projects/fmri/fs_data/test1/mri/T1.mgz surfer: vertices=147407, faces=294810 surfer: single buffered window
Received X error! Error code : 165 Request code : 145 Minor code : 2
Error text : 'GLXBadLargeRequest'(repeat)
The other test commands for tkmedit (tkmedit test1 orig.mgz, tkmedit test1 norm.mgz -segmentation mri/aseg.mgz ...) displayed the results correctly.
If you could give me any suggestion what to do (without going back to FC4 ... I have no control over it), it would be much appreciated.
Thank you,
Ryu Hashimoto
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hello Nick,
I tried the 32-bit disbribution (centos4-stable-pub-v.3.0.1-full) on FC5. This time I did not get any error message but the result did not show up correctly ... it showed only the very tip of the brain (as shown in the attached fig).
Again, any suggestion would be much appreaciated.
Thank you,
Ryu
Nick Schmansky wrote:
Ryu,
I haven't encountered this error myself, nor do I have experience with FC5, however, googling 'GLXBadLargeRequest' turns-up a post that this 'occurs when when you're remotely displaying a 64-bit VMD session to a 32-bit implementation of OpenGL64-bit'. Perhaps FC5 has a 32bit OpenGL implementation, in which case, you could try running the 32-bit version of the freesurfer distribution (which will run on 64bit systems). That would be freesurfer-Linux-centos4-stable-pub-v3.0.1-full.
Nick
On Mon, 2006-04-17 at 11:15 -0400, Ryu-Ichiro Hashimoto wrote:
Hello,
I have been using FreeSurfer on Dell Linux computer (64 bit) with Fedore Core 4 by downloading [freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.1-full] and had no problems.
Recently our lab changed Linux distribution from Fedore Core 4 to 5 and I got the following message when I ran test commands.
tksurfer test1 rh pial
surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs surfer: Reading header info from /projects/fmri/fs_data/test1/mri/T1.mgz surfer: vertices=147407, faces=294810 surfer: single buffered window
Received X error! Error code : 165 Request code : 145 Minor code : 2
Error text : 'GLXBadLargeRequest'(repeat)
The other test commands for tkmedit (tkmedit test1 orig.mgz, tkmedit test1 norm.mgz -segmentation mri/aseg.mgz ...) displayed the results correctly.
If you could give me any suggestion what to do (without going back to FC4 ... I have no control over it), it would be much appreciated.
Thank you,
Ryu Hashimoto
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
<108> nscc2s1 /projects/fmri/fs_datatksurfer bert rh pial surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs_data Talairach transform /tmp/bert/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /projects/fmri/fs_data/bert/mri/transforms/talairach.xfmsurfer: Reading header info from /projects/fmri/fs_data/bert/mri/T1.mgz surfer: vertices=144081, faces=288158 Talairach transform /tmp/bert/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /projects/fmri/fs_data/bert/surf/../mri/transforms/talairach.xfm surfer: single buffered window surfer: using interface /projects/fmri/fs/freesurfer/lib/tcl/tksurfer.tcl Reading /projects/fmri/fs/freesurfer/lib/tcl/tkm_common.tcl Reading /projects/fmri/fs/freesurfer/lib/tcl/tkm_wrappers.tcl Reading /projects/fmri/fs/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /projects/fmri/fs/freesurfer/lib/tcl/tkUtils.tcl Successfully parsed tksurfer.tcl
I had the exact same problem on x64 Ubuntu with both 32-bit and 64-bit FS distros. After installing the most recent nVidia graphics driver, either distribution works fine.
________________________________
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ryuichiro Hashimoto Sent: Mon 4/17/2006 3:40 PM To: Nick Schmansky Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] FS on Fedore Core5
Hello Nick,
I tried the 32-bit disbribution (centos4-stable-pub-v.3.0.1-full) on FC5. This time I did not get any error message but the result did not show up correctly ... it showed only the very tip of the brain (as shown in the attached fig).
Again, any suggestion would be much appreaciated.
Thank you,
Ryu
Nick Schmansky wrote:
Ryu,
I haven't encountered this error myself, nor do I have experience with FC5, however, googling 'GLXBadLargeRequest' turns-up a post that this 'occurs when when you're remotely displaying a 64-bit VMD session to a 32-bit implementation of OpenGL64-bit'. Perhaps FC5 has a 32bit OpenGL implementation, in which case, you could try running the 32-bit version of the freesurfer distribution (which will run on 64bit systems). That would be freesurfer-Linux-centos4-stable-pub-v3.0.1-full.
Nick
On Mon, 2006-04-17 at 11:15 -0400, Ryu-Ichiro Hashimoto wrote:
Hello,
I have been using FreeSurfer on Dell Linux computer (64 bit) with Fedore Core 4 by downloading [freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.1-full] and had no problems.
Recently our lab changed Linux distribution from Fedore Core 4 to 5 and I got the following message when I ran test commands.
tksurfer test1 rh pial
surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs surfer: Reading header info from /projects/fmri/fs_data/test1/mri/T1.mgz surfer: vertices=147407, faces=294810 surfer: single buffered window
Received X error! Error code : 165 Request code : 145 Minor code : 2
Error text : 'GLXBadLargeRequest'(repeat)
The other test commands for tkmedit (tkmedit test1 orig.mgz, tkmedit test1 norm.mgz -segmentation mri/aseg.mgz ...) displayed the results correctly.
If you could give me any suggestion what to do (without going back to FC4 ... I have no control over it), it would be much appreciated.
Thank you,
Ryu Hashimoto
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear all,
I am just writing to report that we are still having the problem I reported before even after the the latest NVidia graphic driver was installed. Our system administrators say that they cannot be certain that it is really a driver problem.
Thank you,
Ryu Hashimoto
Don.Rojas@UCHSC.edu wrote:
I had the exact same problem on x64 Ubuntu with both 32-bit and 64-bit FS distros. After installing the most recent nVidia graphics driver, either distribution works fine.
*From:* freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ryuichiro Hashimoto *Sent:* Mon 4/17/2006 3:40 PM *To:* Nick Schmansky *Cc:* Freesurfer Mailing List *Subject:* Re: [Freesurfer] FS on Fedore Core5
Hello Nick,
I tried the 32-bit disbribution (centos4-stable-pub-v.3.0.1-full) on FC5. This time I did not get any error message but the result did not show up correctly ... it showed only the very tip of the brain (as shown in the attached fig).
Again, any suggestion would be much appreaciated.
Thank you,
Ryu
Nick Schmansky wrote:
Ryu,
I haven't encountered this error myself, nor do I have experience with FC5, however, googling 'GLXBadLargeRequest' turns-up a post that this 'occurs when when you're remotely displaying a 64-bit VMD session to a 32-bit implementation of OpenGL64-bit'. Perhaps FC5 has a 32bit OpenGL implementation, in which case, you could try running the 32-bit version of the freesurfer distribution (which will run on 64bit systems). That would be freesurfer-Linux-centos4-stable-pub-v3.0.1-full.
Nick
On Mon, 2006-04-17 at 11:15 -0400, Ryu-Ichiro Hashimoto wrote:
Hello,
I have been using FreeSurfer on Dell Linux computer (64 bit) with Fedore Core 4 by downloading [freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.1-full] and had no problems.
Recently our lab changed Linux distribution from Fedore Core 4 to 5 and I got the following message when I ran test commands.
tksurfer test1 rh pial
surfer: current subjects dir: /projects/fmri/fs_data surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /projects/fmri/fs surfer: Reading header info from /projects/fmri/fs_data/test1/mri/T1.mgz surfer: vertices=147407, faces=294810 surfer: single buffered window
Received X error! Error code : 165 Request code : 145 Minor code : 2
Error text : 'GLXBadLargeRequest'(repeat)
The other test commands for tkmedit (tkmedit test1 orig.mgz, tkmedit test1 norm.mgz -segmentation mri/aseg.mgz ...) displayed the results correctly.
If you could give me any suggestion what to do (without going back to FC4 ... I have no control over it), it would be much appreciated.
Thank you,
Ryu Hashimoto
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Don.Rojas＠UCHSC.edu -
Nick Schmansky -
Ryu-Ichiro Hashimoto -
Ryuichiro Hashimoto