30 Nov
2020
30 Nov
'20
7:23 p.m.
External Email - Use Caution
Thanks Matt! Should I also add the -autorecon3 flag, or does that get performed automatically if I put in "autorecon2"? Best, Darko
Message: 4 Date: Mon, 30 Nov 2020 19:16:06 +0000 From: "Glasser, Matthew" glasserm@wustl.edu Subject: Re: [Freesurfer] arguments to use after pial edits {Disarmed} To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: 274FD511-F94F-4BC1-AE0C-804F1A6A3A24@wustl.edu Content-Type: text/plain; charset="utf-8"
External Email - Use CautionI find the recon-all table to be helpful:
http://secure-web.cisco.com/1rQT1vL5GWrATp5z0Ct2LBj8MsEx75qijDiNOIOc1xsGTqc0...
In this case, you probably need to run -autorecon2, as all subsequent steps are affected by the brainmask.mgz file.
Matt.