Thank you, we did that, and it was indeed an issue with the way we ran it. Diana

El 9 feb 2017, a las 18:19, Douglas Greve greve@nmr.mgh.harvard.edu escribió:

It says that it was "Killed" which sounds like the job exceeded some resource on the supercomputer. You should contact the administrators to see what the limits are and whether you exceeded them. You can also run the same subject on a regular computer and see if it dies in the same place.

...

On 2/9/17 5:40 AM, Diana Tordesillas-Gutiérrez wrote:

Dear FreeSurfer developers,

I am a new FreeSurfer user and I am trying to run it in a supercomputer for the first time.

Recon-all finished with errors (see log attached) during skull stripping.

I have searched the archives and only found that it could be a memory problem, but I am unsure about this.

The version of freesurfer is: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2

Thank you for your help, Diana

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Diana Tordesillas Gutiérrez, PhD Neuroimaging Unit IDIVAL IDIVAL Building Avda. Cardenal Herrera Oria s/n 39011 Santander Spain Tel. +34 942202677 diana.tordesillas@humv.es diana.tordesillas@gmail.com

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