sorry, no idea. They probably merged labels from the aparc or the aparc+a2009s to create those labels. You might also try mri_annotatoin2label with the --lobes option

On 8/4/2021 5:28 AM, Sumit Sharma wrote:

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Hi Freesurfer Developers

I am trying to reproduce your work in the below paper using freesurfer:

Johansen-Berg, Heidi, et al. "Functional–anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus." /Cerebral cortex/ 15.1 (2005): 31-39.

However, I am not able to find which find represents the c nding labels 9000 - 9006 as mentioned in the lookup table list: *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurfe... https://secure-web.cisco.com/1VgTGj_nBeRhSbdBymlZZQBlnh5ZmiJ_Bdb6vJu1i1grgzTobTz6aLdoSG4jAOYlhnl9kSsDfWeVaK-BhGI2OfhGX09toHX1C6rKz3tIRqAoAR0xPTHSwbMcagxZeh3g5sQ569ynx97yRfA24VALUtfcoEL2w43VYTlrCbRBkL7wFxE1W7_Cw0wXZztLISj6gTHmdTSHHelAJTLMYNWtpuRxn8uZ6PIk4UqtS-ksU4bwEfb6yBn0j77hdV4Z91cjz_Z4Adh0aVLNPfN-EE314Tw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FAnatomicalROI%2FFreeSurferColorLUT

Please share the details of the necessary files (mgz etc) after running the recon-all command.

Thank you. Regads Sumit Sharma

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