Can you look at your 3rd run (and cor-3.img) in tkmedit to see if there are problems with it?

Jenn Segawa wrote:

Hi,

I'm having a problem motion correcting my data. My runs have been converted into .mgz files, and I run recon-all -motioncor -s <subjName>, which runs smoothly until it starts averaging, at which point I get the following:

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Averaging Fri Mar 3 11:32:49 EST 2006 /autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011 inhibiting isotropic volume interpolation 1 of 6: reading /autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mri_mot ion_correct.fsl-9069/cor-1.img... 2 of 6: reading /autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mri_mot ion_correct.fsl-9069/cor-2.img... 3 of 6: reading /autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mri_mot ion_correct.fsl-9069/cor-3.img... INFO: analyzeRead(): min = 0, max = 940 INFO: analyzeRead(): min = 0, max = 820.699 frame = 1, slice = 0, k=128, row = 0 nread = 0, nexpected = 256 analyzeRead2(): error reading from file /autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/ LEX02011/mri/tmp-mri_motion_correct.fsl-9069/cor-3.img

mri_average: MRIread(/autofs/space/oldcask_003/users/gow/LEX02/aMRI_new/LEX02011/mri/tmp-mr i_motion_correct.fsl-9069/cor-3.img) failed Linux oldcask 2.6.9-22.ELsmp #1 SMP Sat Oct 8 19:11:43 CDT 2005 i686 athlon i386 GNU/Linux

recon-all exited with ERRORS at Fri Mar 3 11:33:10 EST 2006

This happens with all my subjects. Any suggestions as to what I'm doing wrong?

Thanks, Jenn

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