Hi Pedro,

about your first question: call the recon-all -long command exactly as you would do the processing, but instead of -all pass -localGI

No idea about 2).

Best, Martin

On Jun 13, 2013, at 12:02 PM, Pedro Rosa pedrogomesrosa@gmail.com wrote:

Dear all, I have two issues:

1. I would like to run localGI in a longitudinal analysis. I runned the recon-all, the -base and the -long in all subjects. Then, I tried to run the -localGI command on .long. directories (I believe this it the directory I should run the command), the error below returned. How can I solve this issue?
2. I tried to download the 5.2 version, but the link does not seem to be working (ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/).

I tried both Chrome and Firefox. Regards, Pedro Rosa.

ERROR: Are you trying to run or re-run a longitudinal time point?

   If so, please specify the following parameters:



   \' -long <tpNid> <templateid> \'



   where <tpNid> is the time point id (SAME as cross sectional

   ID) and <templateid> is the ID created in the -base run.

   The directory <tpNid>.long.<templateid> will be created

   automatically or used for output, if it already exists.

---

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--------------------------------- Dr. Martin Reuter Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT

A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129

Phone: +1-617-724-5652 Email: mreuter@nmr.mgh.harvard.edu reuter@mit.edu Web : http://reuter.mit.edu