Hi Pedro,
about your first question: call the recon-all -long command exactly as you would do the processing, but instead of -all pass -localGI
No idea about 2).
Best, Martin
On Jun 13, 2013, at 12:02 PM, Pedro Rosa pedrogomesrosa@gmail.com wrote:
Dear all, I have two issues:
- I would like to run localGI in a longitudinal analysis. I runned the recon-all, the -base and the -long in all subjects. Then, I tried to run the -localGI command on .long. directories (I believe this it the directory I should run the command), the error below returned. How can I solve this issue?
- I tried to download the 5.2 version, but the link does not seem to be working (ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/).
I tried both Chrome and Firefox. Regards, Pedro Rosa.
ERROR: Are you trying to run or re-run a longitudinal time point?
If so, please specify the following parameters: \' -long <tpNid> <templateid> \' where <tpNid> is the time point id (SAME as cross sectional ID) and <templateid> is the ID created in the -base run. The directory <tpNid>.long.<templateid> will be created automatically or used for output, if it already exists.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--------------------------------- Dr. Martin Reuter Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT
A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129
Phone: +1-617-724-5652 Email: mreuter@nmr.mgh.harvard.edu reuter@mit.edu Web : http://reuter.mit.edu