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Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you, Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIK...http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
https://secure-web.cisco.com/158m2Mk7xVvNTOqu1Onlo3GW-mrGUVQUQR1Nxh5mCc2yTrz...
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Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please? Cheers, /Eugenio
-- Juan Eugenio Iglesias http://secure-web.cisco.com/17R5U4dEBJCcdG3QUUTbhXq98ahPm8wK3gHT_Kp2MyRltQVD...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels
External Email - Use Caution Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you, Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1wMGQWOrHitvd8jlLC0jWSQ84drHB_bvj5kRaBi6axyC52UX...http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1X3zpa1a3TtG6oQWYK0evUE77fTgrdhv_5-r4VeIXrnDVgh...https://secure-web.cisco.com/158m2Mk7xVvNTOqu1Onlo3GW-mrGUVQUQR1Nxh5mCc2yTrzFJfeJGkNshODQrS36NgBynIuAA76OgoFOTjIUGhTlGSBWXiGvrE68JpeACJGSTxG4JLCmzavubGu7m2XldRNVEhEGQfEQTmYFa7YXKTW5pPOXwCyvGkUSQHJY96FroS0Gv6dbOdeFCsY_De4jBK7e38wGoFInumKa6TVleyV1-bB0bNzFOZsT2LPG2mhBDtwOKA2YIyJ1hIj66SaZkAIk2zmMDITjERtwUmoixMA/https%3A%2F%2Fscholar.harvard.edu%2Floggia
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Thanks Eugenio! csv attached...
I source: [cid:b84edda1-fcdd-48fc-8432-335703b04b75]
best, Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5...http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
https://secure-web.cisco.com/1rv3wX-dfKawMQP5NwtEhO1S8-ZkxDO-nMBCiy5CfDDBfrH...
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/11Cxruc47BuRda-DyKFgS4NG_uqkV2S5IVN9NK8vCLnBzUY-...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5...http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
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Thanks for sharing the CSV Akila. Could you also share what command you used to generate this CSV and the corresponding terminal output please? I was not able to recreate this error on my end. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Sent: Tuesday, October 3, 2023 9:20 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks Eugenio! csv attached...
I source: [cid:b84edda1-fcdd-48fc-8432-335703b04b75]
best, Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1ReufptGsr4IyfGB1uGuakC-EZIBhIjMmxD80cHsF86n19bh...http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
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________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/1a9ooA029rV8bRkgoeKJz6ads4zlv0aAVSJ-wq5c5p9E1h4x...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1ReufptGsr4IyfGB1uGuakC-EZIBhIjMmxD80cHsF86n19bh...http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
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Dear Akila, The error stems from trying to write the outpus of –qc and –vol to the same CSV file. We’ll add a check to the code to make sure that an error is thrown if both files are the same. Cheers, /Eugenio
-- Juan Eugenio Iglesias http://secure-web.cisco.com/18K-dhyKjWQHzNnB3upfQmeJOz7_T0qpyO0pL5GkJkZ95SH7...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 6:21 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
External Email - Use Caution Thanks Eugenio! csv attached...
I source: [cid:b84edda1-fcdd-48fc-8432-335703b04b75]
best, Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1ZTXa0CRjaQIGS5HEEfXjtDdG25e7aY5rd6dX9jhZJ2dUTww...http://secure-web.cisco.com/1zyRKNZEwBEeu5aBS1igKt5TjwAkp423Sx__wJFJMUWvujY5ep86DH-txqpB5HyvuZ1EWI8icknsrOwEEXYzY1AI1nR8_81eyRQeRNQRjRMsgKBMkJVi-J0zDndaLI2AiQmb21OMgdyFnVvJcw6X7Ml_qF7tz2TrJSs1aU7lz-IZ3cRqEChxVdRYzpb7wrnspeDhM87awQ9x2PCCwPFBNjOQC7A7asMJxQITuUBtYUV2dcGpijGlcGn5hOBCbn1us6tTO82Xy4OvfYzhpHUN3qg/http%3A%2F%2Fwww.nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1LB2CW_cejC0m-CCMob6o1AAO3b57utVtNu3y8jSB-7Hpxy...https://secure-web.cisco.com/1rv3wX-dfKawMQP5NwtEhO1S8-ZkxDO-nMBCiy5CfDDBfrH725YdvPT9odXWSDhXax_tkxVXxRTasCwoqCgc3nQdCT1pcyLsexwpgyDO7tVzan-z8tI_XaEW3c9vwnA5Nmp1bMZVC-27UwYnbdAhTbG1HmUVCoiL4F79y7p-dHEDNIrSA3zztB2YdS9tWBu3hfAZ8L79ozK7D5glQRz7V9mSuGGQM_v50IVOROy_3mjW9g0T5UOCb0RI2E9CYAJPJgDuCjLKOCEBQpCSEDa4xKQ/https%3A%2F%2Fscholar.harvard.edu%2Floggia
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/18K-dhyKjWQHzNnB3upfQmeJOz7_T0qpyO0pL5GkJkZ95SH7...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels
External Email - Use Caution
Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1ZTXa0CRjaQIGS5HEEfXjtDdG25e7aY5rd6dX9jhZJ2dUTww...http://secure-web.cisco.com/1pRNH3jpPVm0xhHznjcAnuOO_FSI27YNJi0tVFuibJuCEyIKNvOjS0zxfYeZls6-N7to8HDwdFMusD4APrNUD8cvTJ7AsP1bgvHK1YSv_6Zx7fb4h0I8DGwhrHCqTJlItXEQO7ZXSn-Mw4sUw8O1WGTftROYvJfo_vGFIm5jkuF30CzN5E8F7XR-oTOCoKroJbCi15yJOPDL1e5YfsN4iFvegtZaC6slEXCeLnufNogDUhSL6xB-VIH2TFkdS3wBWqRbCNxDy0ZfXi7VUtbnK5A/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
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Thanks Eugenio and Avinsh!
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
http://secure-web.cisco.com/1Y2O2OJANrAmouyKRuyV16bZaE5ZqiFp_dMEFsA-B3cPhej1...http://secure-web.cisco.com/1Y2O2OJANrAmouyKRuyV16bZaE5ZqiFp_dMEFsA-B3cPhej1FG0YIoAbJuDcgteVLRzl511RofAtFsfVdA7KuxkPiTSWc828wQkSjI8VZSfc_UHbmC42m6h7LMuHoON_7v_zi8UDFvKlAXhmF0NZaywTlo4nEHBhj4ebNRtVIaGDIo1MZmPBSrE-GtejBkT1B3YswqTqQsKCTmobiB0O5lB1x6XmPMdG25XLCFV88ro8kRdHvXyviszuGS3lBs8zCf-7L93ywEjwbzFlHg7gUvQ/http%3A%2F%2Fwww.nmr.mgh.harvard.edu
https://secure-web.cisco.com/1Lc6dLnksk7D6mg0d_lK_420kp4bCqBSYm-t7gpqYMaRKFp...
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Thursday, October 5, 2023 7:20 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
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Dear Akila,
The error stems from trying to write the outpus of –qc and –vol to the same CSV file.
We’ll add a check to the code to make sure that an error is thrown if both files are the same.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/1MMQhx9Z04Vxf-w6LsnEFcMjyC3_TrMkS8HBoRqpT7N9Wwmc...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 6:21 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks Eugenio! csv attached...
I source:
[cid:b84edda1-fcdd-48fc-8432-335703b04b75]
best,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
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________________________________
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/1MMQhx9Z04Vxf-w6LsnEFcMjyC3_TrMkS8HBoRqpT7N9Wwmc...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels
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Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
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