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Thanks for sharing the CSV Akila. Could you also share what command you used to generate this CSV and the corresponding terminal output please? I was not able to recreate this error on my end. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Sent: Tuesday, October 3, 2023 9:20 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks Eugenio! csv attached...
I source: [cid:b84edda1-fcdd-48fc-8432-335703b04b75]
best, Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
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________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Sent: Tuesday, October 3, 2023 8:52 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg volume labels
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Thanks, this is super weird. When did you download this dev version? Also: would it be possible to share the CSV file, please?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://secure-web.cisco.com/1a9ooA029rV8bRkgoeKJz6ads4zlv0aAVSJ-wq5c5p9E1h4x...
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Weerasekera, Akila,PHD AWEERASEKERA@mgh.harvard.edu Date: Tuesday, October 3, 2023 at 7:01 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] SynthSeg volume labels
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Hi,
Using SynthSeg (Freesurfer dev) with --vol, the .csv does not contain all volume labels, do I need to include anything else in the command?
[cid:878677f0-6b6f-4a4d-9c3a-54e1808b22ac]
Thank you,
Akila
Akila Weerasekera, PhD | Postdoctoral Research Fellow
Maria Mody lab for Developmental Language and Reading Research Laboratory |
Eva Ratai Lab for Clinical Spectroscopy |
Garry Nolan Lab (Stanford University) |
Harvard Medical School | A. A. Martinos Center for Biomedical Imaging | Massachusetts General Hospital | 149 Thirteenth Street, Room 1101 |Charlestown, MA 02129, USA
Mobile: (781) 820 4501
aweerasekera@mgh.harvard.edu mailto:aweerasekera@mgh.harvard.edu
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