Yes, that is the correct command line

On 2/9/18 9:16 AM, Avideh Gharehgazlou wrote:

Hi Freesurfer experts,

I found the answer to my previous question on FreeSurfer Wiki regarding pre-smoothing command line for LGI ( I am interested in looking at between-group differences in vertwex-wise LGI values).

I am now aware that the following command line must be used:

recon-all -s <subjid> -qcache -measure pial_lgi

However, if I also want to look at surface area differences between groups later on, is using the above pre-smoothing command line correct? OR do I have to use the following command line considering that I Am not only looking at LGI values : recon-all -s <subjid> -qcache

Would really appreciate your advice,

Thanks,

Avi

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