you can make it with mkdir tmp

On 10/28/16 11:41 AM, Sneha Pandya wrote:

Hi

Douglas ,

Ideally, when we run recon-all, it creates following sub-directories underneath each subject directory, and "tmp" folder is one of them where we usually save our control.dat file. For me when I ran recon-all it created "tmp" folder for some of them whereas skipped for rest.

bem label mri scripts src stats surf tmp touch trash

Thanks,

Sneha

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*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas Greve greve@nmr.mgh.harvard.edu *Sent:* Friday, October 28, 2016 11:27:25 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] tmp directory not created

which tmp folder?

On 10/26/16 11:26 AM, Sneha Pandya wrote:

...

Hi all,

I am running recon-all stream for ~200 subjects and after successful run of them I observed that for some of the patients recon-all ran successfully without error but it did not create "tmp" sub-folder. Can anyone please advice when recon-all stream does not create "tmp" folder and do I need to run these subjects again even after its successful completion?

Thanks, Sneha

---

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

It is weird that it did not make that folder. That folder is made when the other folders is made. It is a mystery to me.

On 10/28/16 12:24 PM, Sneha Pandya wrote:

Thank you Dough, that is what I did eventually, but was not sure if something went wrong with the processing for it to not create the folder.

Regards, Sneha

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*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas Greve greve@nmr.mgh.harvard.edu *Sent:* Friday, October 28, 2016 12:07:13 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] tmp directory not created {Disarmed}

you can make it with mkdir tmp

On 10/28/16 11:41 AM, Sneha Pandya wrote:

...

Hi

Douglas ,

Ideally, when we run recon-all, it creates following sub-directories underneath each subject directory, and "tmp" folder is one of them where we usually save our control.dat file. For me when I ran recon-all it created "tmp" folder for some of them whereas skipped for rest.

bem label mri scripts src stats surf tmp touch trash

Thanks,

Sneha

---

*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas Greve greve@nmr.mgh.harvard.edu *Sent:* Friday, October 28, 2016 11:27:25 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] tmp directory not created

which tmp folder?

On 10/26/16 11:26 AM, Sneha Pandya wrote:

...

Hi all,

I am running recon-all stream for ~200 subjects and after successful run of them I observed that for some of the patients recon-all ran successfully without error but it did not create "tmp" sub-folder. Can anyone please advice when recon-all stream does not create "tmp" folder and do I need to run these subjects again even after its successful completion?

Thanks, Sneha

---

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