This is a bug. I've attached a new version. You can copy it to $FREESURFER/python/scripts/mri_sclimbic_seg doug

On 9/23/2022 5:29 PM, bar gen wrote:

External Email - Use Caution

Hi all, I am receiving this error when trying to run sclimbic module.

mri_sclimbic_seg --i /Users/mdbargen/Documents/control-T1--o /Users/mdbargen/Documents/control-limbic--conform

Segmenting image 1/68

Loaded input image from /Users/barisgenc/Documents/Kontrol-T1/Acar_Ebru-T1.nii.gz

Traceback (most recent call last):

File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 1048, in <module>

main()

File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 312, in main

segmenter.process_files(**params)

File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 577, in process_files

post, seg, vox_counts, volumes, mean_probs = self.segment(image)

File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 497, in segment

conformed = self.preprocess(image)

File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 469, in preprocess

print('The input image has resolution (%4.2f,%4.2f,%4.2f) mm, but 1mm-isotropic input is required.\n'

TypeError: only size-1 arrays can be converted to Python scalars

How can i solve this?

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer