This is a bug. I've attached a new version. You can copy it to $FREESURFER/python/scripts/mri_sclimbic_seg doug
On 9/23/2022 5:29 PM, bar gen wrote:
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Hi all, I am receiving this error when trying to run sclimbic module.
mri_sclimbic_seg --i /Users/mdbargen/Documents/control-T1--o /Users/mdbargen/Documents/control-limbic--conform
Segmenting image 1/68
Loaded input image from /Users/barisgenc/Documents/Kontrol-T1/Acar_Ebru-T1.nii.gz
Traceback (most recent call last):
File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 1048, in <module>
main()
File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 312, in main
segmenter.process_files(**params)
File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 577, in process_files
post, seg, vox_counts, volumes, mean_probs = self.segment(image)
File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 497, in segment
conformed = self.preprocess(image)
File "/Applications/freesurfer/7.3.2/python/scripts/mri_sclimbic_seg", line 469, in preprocess
print('The input image has resolution (%4.2f,%4.2f,%4.2f) mm, but 1mm-isotropic input is required.\n'
TypeError: only size-1 arrays can be converted to Python scalars
How can i solve this?
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