Can you send subjlist.csv? Do you get the same error if you run ls -d PD* > subjlist.txt and use that file instead?

On 04/03/2016 05:16 AM, Lars M. Rimol wrote:

Hi,

I'm trying to run asegstats2table

asegstats2table --subjects subjlist.csv --skip --delimiter comma --common-segs --tablefile asegs_03042016.csv

All subjects in the subjlist are present in the directory but I get this error message:

Parsing the .stats files Building the table.. Traceback (most recent call last): File "/usr/local/freesurfer/bin/asegstats2table", line 560, in <module> rows, columns, table = sanitize_table(options, pretable) File "/usr/local/freesurfer/bin/asegstats2table", line 454, in sanitize_table _specs, _id_name_map, _measl = _t[0] IndexError: list index out of range

I get the error message even if I reduce the list to two subjects. It works if I do this (all subjdirs begin with PD):

asegstats2table --subjects PD* --skip --delimiter comma --common-segs --tablefile asegs_03042016.csv

And it works if I enter the subjects' names individually. With over 100 subjects, however, that's not an option.

I'd be grateful for any suggestion on how to run asegstats2table with a subjects list.

Thank you!

sincerely yours,

Lars M. Rimol, PhD Senior researcher, Norwegian Advisory Unit for functional MRI Department of Radiology, St. Olav's University hospital, 7006 Trondheim, Norway

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