Hi,
I'm trying to run asegstats2table
asegstats2table --subjects subjlist.csv --skip --delimiter comma --common-segs --tablefile asegs_03042016.csv
All subjects in the subjlist are present in the directory but I get this error message:
Parsing the .stats files Building the table.. Traceback (most recent call last): File "/usr/local/freesurfer/bin/asegstats2table", line 560, in <module> rows, columns, table = sanitize_table(options, pretable) File "/usr/local/freesurfer/bin/asegstats2table", line 454, in sanitize_table _specs, _id_name_map, _measl = _t[0] IndexError: list index out of range
I get the error message even if I reduce the list to two subjects. It works if I do this (all subjdirs begin with PD):
asegstats2table --subjects PD* --skip --delimiter comma --common-segs --tablefile asegs_03042016.csv
And it works if I enter the subjects' names individually. With over 100 subjects, however, that's not an option.
I'd be grateful for any suggestion on how to run asegstats2table with a subjects list.
Thank you!
sincerely yours,
Lars M. Rimol, PhD Senior researcher, Norwegian Advisory Unit for functional MRI Department of Radiology, St. Olav's University hospital, 7006 Trondheim, Norway