Thanks Dr.Bruce, one small clarification then, it is mentioned in the user manual to verify this registration result before proceeding further so when i used tkregister2 --sub2 --fstal-avi i could see two images one is the original and the other one talairach atlas and they looked they are aligned almost closely. So what is this image i looked at?

Thanks

venkateswaran

-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Thu 11/19/2009 12:43 PM To: Rajagopalan, Venkateswaran Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] talairach registration-result

Hi Venkateswaran,

we don't apply the tal xform,just compute it (in mri/transforms/talairach.xfm), so there is no volume "after talairach".

cheers, Bruce

On Thu, 19 Nov 2009, Rajagopalan, Venkateswaran wrote:

Dear Freesurfer Users,

Could anyone please tell me what is the name of the image file after talairach registration for instance like nu.mgz (after intensity correction).

Thanks

venkateswaran

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Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.

Okay thanks very much.

-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Thu 11/19/2009 3:30 PM To: Rajagopalan, Venkateswaran Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] talairach registration-result

tkregister2 applies the transform to the native volume and displays (but doesn't save a transformed volume to disk)

On Thu, 19 Nov 2009, Rajagopalan, Venkateswaran wrote:

Thanks Dr.Bruce, one small clarification then, it is mentioned in the user manual to verify this registration result before proceeding further so when i used tkregister2 --sub2 --fstal-avi i could see two images one is the original and the other one talairach atlas and they looked they are aligned almost closely. So what is this image i looked at?

Thanks

venkateswaran

-----Original Message----- From: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Sent: Thu 11/19/2009 12:43 PM To: Rajagopalan, Venkateswaran Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] talairach registration-result

Hi Venkateswaran,

we don't apply the tal xform,just compute it (in mri/transforms/talairach.xfm), so there is no volume "after talairach".

cheers, Bruce

On Thu, 19 Nov 2009, Rajagopalan, Venkateswaran wrote:

...

Dear Freesurfer Users,

Could anyone please tell me what is the name of the image file after talairach registration for instance like nu.mgz (after intensity correction).

Thanks

venkateswaran

===================================

P Please consider the environment before printing this e-mail

Cleveland Clinic is ranked one of the top hospitals in America by U.S.News & World Report (2009). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations.

Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.

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P Please consider the environment before printing this e-mail

Cleveland Clinic is ranked one of the top hospitals in America by U.S.News & World Report (2009). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations.

Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.

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P Please consider the environment before printing this e-mail

Cleveland Clinic is ranked one of the top hospitals in America by U.S.News & World Report (2009). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations.

Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.