Hi Aaron,

First, is it something simple and annoying like that your script doesn't look for an orig.mgz volume (vs. the 'orig' which was standard until fairly recently)? I have needed to edit my scripts to accommodate for this.

okay!

On Wed, 2 Nov 2005, Goldman, Aaron (NIH/NIMH) wrote:

Hi, I have a script that basically opens up tksurfer and tkmedit for manual editing, and then runs recon-all stage2 once you're done editing. We recently tried to run the script on a different computer with the same freesurfer distribution, and got an error I'm not used to seeing.

It says:

WARNING: Couldn't not load orig volume from /????//surf/../mri/orig.mgz

    Talairach coords will be incorrect.

(the '????' was edited in by me)

I was just wondering if this error will create problems, either with correct manual editing or with running stage2. Thanks,

-Aaron-

Aaron L. Goldman

Post-Bacc IRTA

Genes, Cognition and Psychosis Program, NIMH

Building 10, Room 3C108

Phone: (301) 435-0944

Email: aarong@mail.nih.gov