LGI longitudinal data

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qdec.table.dat

Tricia Merkley

28 Sep 2013 28 Sep '13

1:53 p.m.

Hi,

Is it possible to run the LGI on data that has already been longitudinally processed?

For example, when I try to run:

recon-all -s subject001.long.subject001_base -localGI

I get the following error:

ERROR: Are you trying to run or re-run a longitudinal time point? If so, please specify the following parameters:

' -long <tpNid> <templateid> '

where <tpNid> is the time point id (SAME as cross sectional ID) and <templateid> is the ID created in the -base run. The directory <tpNid>.long.<templateid> will be created automatically or used for output, if it already exists.

This is using v5.1.0, and no, I'm not trying to re-run a longitudinal time point. Just the LGI. I'd appreciate any suggestions!

Thanks so much, Tricia

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Martin Reuter

3 Oct 3 Oct

10:48 a.m.

Hi Tricia,

try recon-all -long subject001 subject001_base -localGI

Best, Martin

On 09/28/2013 01:53 PM, Tricia Merkley wrote:

...

Hi,

Is it possible to run the LGI on data that has already been longitudinally processed?

For example, when I try to run:

recon-all -s subject001.long.subject001_base -localGI

I get the following error:

ERROR: Are you trying to run or re-run a longitudinal time point? If so, please specify the following parameters:
   \' -long <tpNid> <templateid> \'

   where <tpNid> is the time point id (SAME as cross sectional
   ID) and <templateid> is the ID created in the -base run.
   The directory <tpNid>.long.<templateid> will be created
   automatically or used for output, if it already exists.
This is using v5.1.0, and no, I'm not trying to re-run a longitudinal time point. Just the LGI. I'd appreciate any suggestions!

Thanks so much, Tricia

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Tricia Merkley

4 Oct 4 Oct

6:48 p.m.

That command works. Thanks so much, Martin!

Best, Tricia

________________________________ From: Martin Reuter mreuter@nmr.mgh.harvard.edu To: Tricia Merkley tmerkle22@yahoo.com Cc: Freesurfer list freesurfer@nmr.mgh.harvard.edu Sent: Thursday, October 3, 2013 9:48 AM Subject: Re: [Freesurfer] LGI longitudinal data

Hi Tricia,

try recon-all -long subject001 subject001_base -localGI

Best, Martin

On 09/28/2013 01:53 PM, Tricia Merkley wrote:

Hi,

...

Is it possible to run the LGI on data that has already been longitudinally processed?

For example, when I try to run:

recon-all -s subject001.long.subject001_base -localGI

I get the following error:

ERROR: Are you trying to run or re-run a longitudinal time point? If so, please specify the following parameters:

' -long <tpNid> <templateid> '

where <tpNid> is the time point id (SAME as cross sectional ID) and <templateid> is the ID created in the -base run. The directory <tpNid>.long.<templateid> will be created automatically or used for output, if it already exists.

This is using v5.1.0, and no, I'm not trying to re-run a longitudinal time point. Just the LGI. I'd appreciate any suggestions!

Thanks so much, Tricia

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Martin Reuter, Ph.D. Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129 Phone: +1-617-724-5652 Email: mreuter@nmr.mgh.harvard.edu reuter@mit.edu Web : http://reuter.mit.edu The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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Martin Reuter
Tricia Merkley