Re: [Freesurfer] LGI longitudinal data

That command works.  Thanks so much, Martin!

Best, Tricia

________________________________ From: Martin Reuter mreuter@nmr.mgh.harvard.edu To: Tricia Merkley tmerkle22@yahoo.com Cc: Freesurfer list freesurfer@nmr.mgh.harvard.edu Sent: Thursday, October 3, 2013 9:48 AM Subject: Re: [Freesurfer] LGI longitudinal data

Hi Tricia,

try recon-all -long subject001 subject001_base -localGI

Best, Martin

On 09/28/2013 01:53 PM, Tricia Merkley wrote:

Hi,

Is it possible to run the LGI on data that has already been longitudinally processed?

For example, when I try to run:

recon-all -s subject001.long.subject001_base -localGI

I get the following error:

ERROR: Are you trying to run or re-run a longitudinal time point?        If so, please specify the following parameters:

' -long <tpNid> <templateid> '

where <tpNid> is the time point id (SAME as cross sectional        ID) and <templateid> is the ID created in the -base run.        The directory <tpNid>.long.<templateid> will be created        automatically or used for output, if it already exists.

This is using v5.1.0, and no, I'm not trying to re-run a longitudinal time point.  Just the LGI. I'd appreciate any suggestions!

Thanks so much, Tricia

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