Hello K,

Can you try downloading the 6.0.0 release archive from the web site (please note it is 4.8G),

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gzftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

Then you will need 5 GB of space to uncompress it. I would add the v option so you can see the expansion in progress,

$ tar zxvpf freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

- Rob

On Aug 11, 2018, at 2:55 AM, Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> wrote:

External Email - Use Caution

Thanks for your response. I run the command you suggested and this is what I got: freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd: (Empty error message) tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best, K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edumailto:RDICAMILLO@mgh.harvard.edu> wrote: Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> wrote:

External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer and did: tar xvzf freesurfer-linux-centos6_x86_64-dev.tar.gz

to get

gzip: stdin: unexpected end of file tar: Unexpected EOF in archive tar: Unexpected EOF in archive tar: Error is not recoverable: exiting now

Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and SurferEnv.sh only the csh files.

Any pointers how to solve these would be appreciated.

Thanks, S _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Hi K, your original error is usually due to an incomplete download. You might want to try redownloading and untaring again Best, Andrew

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Schumman Resonance schummanr@gmail.com Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Saturday, August 11, 2018 at 9:24 AM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Untar and sh files in dev version

External Email - Use Caution Thanks for your response, but I already have the stable release version in another system. What I'd like to do now is to run the development version. Thanks, K

On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edumailto:RDICAMILLO@mgh.harvard.edu> wrote: Hello K,

Can you try downloading the 6.0.0 release archive from the web site (please note it is 4.8G),

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gzftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

Then you will need 5 GB of space to uncompress it. I would add the v option so you can see the expansion in progress,

$ tar zxvpf freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

- Rob

On Aug 11, 2018, at 2:55 AM, Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> wrote:

External Email - Use Caution

Thanks for your response. I run the command you suggested and this is what I got: freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd: (Empty error message) tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best, K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edumailto:RDICAMILLO@mgh.harvard.edu> wrote: Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> wrote:

External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer and did: tar xvzf freesurfer-linux-centos6_x86_64-dev.tar.gz

to get

gzip: stdin: unexpected end of file tar: Unexpected EOF in archive tar: Unexpected EOF in archive tar: Error is not recoverable: exiting now

Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and SurferEnv.sh only the csh files.

Any pointers how to solve these would be appreciated.

Thanks, S _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

And the downloads have finished successfully each time? Are you definitely grabbing the tarball from https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/freesurfer-linux-... Andrew

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Schumman Resonance schummanr@gmail.com Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Saturday, August 11, 2018 at 2:55 PM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Untar and sh files in dev version

External Email - Use Caution Thanks Andrew. I have done that twice now...

On Sat, Aug 11, 2018 at 10:21 AM, Hoopes, Andrew <AHOOPES@mgh.harvard.edumailto:AHOOPES@mgh.harvard.edu> wrote: Hi K, your original error is usually due to an incomplete download. You might want to try redownloading and untaring again Best, Andrew

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Saturday, August 11, 2018 at 9:24 AM To: FS Help <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Untar and sh files in dev version

External Email - Use Caution Thanks for your response, but I already have the stable release version in another system. What I'd like to do now is to run the development version. Thanks, K

On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edumailto:RDICAMILLO@mgh.harvard.edu> wrote: Hello K,

Can you try downloading the 6.0.0 release archive from the web site (please note it is 4.8G),

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gzftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

Then you will need 5 GB of space to uncompress it. I would add the v option so you can see the expansion in progress,

$ tar zxvpf freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

- Rob

On Aug 11, 2018, at 2:55 AM, Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> wrote:

External Email - Use Caution

Thanks for your response. I run the command you suggested and this is what I got: freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd: (Empty error message) tar: Error exit delayed from previous errors.

Also, still no .sh files...

Best, K

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edumailto:RDICAMILLO@mgh.harvard.edu> wrote: Hello Schumman,

Try the following command on the tar archive (cut and paste it if you like)

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

and then take a look at the files.

- Rob

On Aug 10, 2018, at 10:25 PM, Schumman Resonance <schummanr@gmail.commailto:schummanr@gmail.com> wrote:

External Email - Use Caution

Hi,

Couple of newbie questions. I downloaded the dev version of freesurfer and did: tar xvzf freesurfer-linux-centos6_x86_64-dev.tar.gz

to get

gzip: stdin: unexpected end of file tar: Unexpected EOF in archive tar: Unexpected EOF in archive tar: Error is not recoverable: exiting now

Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and SurferEnv.sh only the csh files.

Any pointers how to solve these would be appreciated.

Thanks, S _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.