Dear FreeSurfer Developers Using "mris_volume surface_file_name " now i can't see any output files and 381271.851642 is shown in the command terminal, i have no idea what the problem is. Could you please help? Thank you!
Hi Fereshte,
mris_volume does not create any output files, that number you see in the terminal is the total volume of a given closed surface.
Try running mris_volume -v <surface_file> instead and you will see something like this in your terminal:
reading <surface_file>... surface file read in. Volume computation took 0 minutes and 1 seconds. total volume surrounded by the surface is 381271
Emma
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Fereshte fereshte.ramezani@gmail.com Sent: Wednesday, September 20, 2017 1:45:17 AM To: Freesurfer support list Subject: [Freesurfer] Mris_volume
Dear FreeSurfer Developers Using "mris_volume surface_file_name " now i can't see any output files and 381271.851642 is shown in the command terminal, i have no idea what the problem is. Could you please help? Thank you!
Hi Emma Are there any ways to obtain the surface label then? Thank you! On Wed, Sep 20, 2017 at 5:15 PM Boyd, Emma EBOYD2@mgh.harvard.edu wrote:
Hi Fereshte,
mris_volume does not create any output files, that number you see in the terminal is the total volume of a given closed surface.
Try running *mris_volume -v <surface_file>* instead and you will see something like this in your terminal:
reading <surface_file>... surface file read in. Volume computation took 0 minutes and 1 seconds. total volume surrounded by the surface is 381271
Emma
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Fereshte < fereshte.ramezani@gmail.com> *Sent:* Wednesday, September 20, 2017 1:45:17 AM *To:* Freesurfer support list *Subject:* [Freesurfer] Mris_volume
Dear FreeSurfer Developers Using "mris_volume surface_file_name " now i can't see any output files and 381271.851642 is shown in the command terminal, i have no idea what the problem is. Could you please help? Thank you!
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Hi Fereshte,
Could you please clarify what you mean by "obtain the surface label"?
Thanks,
Emma
---------
Emma Boyd
Research Technician II
Laboratory for Computational Neuroimaging
Martinos Center for Biomedical Imaging
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Fereshte fereshte.ramezani@gmail.com Sent: Thursday, September 21, 2017 10:26 AM To: Freesurfer support list Subject: Re: [Freesurfer] Mris_volume
Hi Emma Are there any ways to obtain the surface label then? Thank you! On Wed, Sep 20, 2017 at 5:15 PM Boyd, Emma <EBOYD2@mgh.harvard.edumailto:EBOYD2@mgh.harvard.edu> wrote:
Hi Fereshte,
mris_volume does not create any output files, that number you see in the terminal is the total volume of a given closed surface.
Try running mris_volume -v <surface_file> instead and you will see something like this in your terminal:
reading <surface_file>... surface file read in. Volume computation took 0 minutes and 1 seconds. total volume surrounded by the surface is 381271
Emma
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Fereshte <fereshte.ramezani@gmail.commailto:fereshte.ramezani@gmail.com> Sent: Wednesday, September 20, 2017 1:45:17 AM To: Freesurfer support list Subject: [Freesurfer] Mris_volume
Dear FreeSurfer Developers Using "mris_volume surface_file_name " now i can't see any output files and 381271.851642 is shown in the command terminal, i have no idea what the problem is. Could you please help? Thank you!
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Boyd, Emma -
Fereshte