hi doug,

could you please highlight the changes - especially if there are any critical bug fixes? and should we rerun the new mri_segstats on our current 5.3 processed data?

cheers,

satra

On Mon, Nov 4, 2013 at 9:26 AM, Douglas Greve greve@nmr.mgh.harvard.eduwrote:

I've put new versions here: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/ doug

On 11/4/13 7:09 AM, Matura, Silke wrote:

Dear Freesurfer community,

we are doing cortical thickness analyses with Freesurfer version 5.3.0 in a Linux environment. In order to do the autorecon-1 and autorecon-2 steps, we need to download the new version of mri_segstats.

Unfortunately, the link on the Freesurfer Release Notes Webpage does not work. Also, we could not find mri_segstats on the ftp server: *ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.centos6 ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.centos6*

Could you tell us, where we can download the new version of mri_segstats?

Thank you,

Silke

Dr. Dipl.-Psych. Silke Matura

Department of Psychiatry, Psychosomatic Medicine and Psychotherapy

Laboratory of Neurophysiology and Neuroimaging

Johann Wolfgang Goethe University of Frankfurt

Heinrich-Hoffman-Str. 10

60528 Frankfurt Germany

Tel: 069 6301 7655

email: Silke.Matura@kgu.de

---

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---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

thanks doug.

cheers,

satra

On Mon, Nov 4, 2013 at 5:33 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:

It gives the same results as the 5.3 version. The difference is that it does not require the ribbon.mgz file to be there in order to run. If you run recon-all from start to finish, then there is not a problem. If you run recon-all partially, then it may fail because it runs mri_segstats before the ribbon.mgz is created. doug

On 11/04/2013 09:30 AM, Satrajit Ghosh wrote:

...

hi doug,

could you please highlight the changes - especially if there are any critical bug fixes? and should we rerun the new mri_segstats on our current 5.3 processed data?

cheers,

satra

On Mon, Nov 4, 2013 at 9:26 AM, Douglas Greve <greve@nmr.mgh.harvard.edumailto: greve@nmr.mgh.harvard.edu> wrote:

I've put new versions here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/
doug



On 11/4/13 7:09 AM, Matura, Silke wrote:

...

Dear Freesurfer community,

we are doing cortical thickness analyses with Freesurfer version
5.3.0 in a Linux environment.  In order to do the autorecon-1 and
autorecon-2 steps, we need to download the new version of
mri_segstats.

Unfortunately, the link on the Freesurfer Release Notes Webpage
does not work. Also, we could not find mri_segstats on the ftp
server:
/ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/

greve/mri_segstats.centos6/

//


Could you tell us, where we can download the new version of
mri_segstats?

Thank you,

Silke

Dr. Dipl.-Psych. Silke Matura

Department of Psychiatry, Psychosomatic Medicine and Psychotherapy

Laboratory of Neurophysiology and Neuroimaging

Johann Wolfgang Goethe University of Frankfurt

Heinrich-Hoffman-Str. 10

60528 Frankfurt Germany

Tel: 069 6301 7655

email: Silke.Matura@kgu.de <mailto:Silke.Matura@kgu.de>



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harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
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Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu

...

https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to
whom it is
addressed. If you believe this e-mail was sent to you in error and
the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to
you in error
but does not contain patient information, please contact the
sender and properly
dispose of the e-mail.

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/