you can try some of the things suggested here:

https://surfer.nmr.mgh.harvard.edu/fswiki/TksurferDisplayProblems

although those suggestions are targetted at the 'sliver' problem, where you get a display of only a tiny section of the brain. you dont seem to be getting any display.

n.

On Wed, 2010-02-10 at 16:18 +0000, Daniel Ferreira Padilla wrote:

Yes, I click over the redraw button but it doesn’t work. It is strange but despite tksurfer window is empty, when I click on it, labels and values appear in tksurfer tools window.

Any other idea?

Thank you very much in advance

-----Mensaje original----- De: Bruce Fischl [mailto:fischl@nmr.mgh.harvard.edu] Enviado el: miércoles, 10 de febrero de 2010 15:49 Para: Daniel Ferreira Padilla CC: freesurfer@nmr.mgh.harvard.edu Asunto: Re: [Freesurfer] tksurfer error

have you tried clicking the "redraw" button? On Wed, 10 Feb 2010, Daniel Ferreira Padilla wrote:

...

Dear Freesurfer users,

I hope you could help me with that problem. I do the recon-all

preprocessing

...

step and then I try tksurfer. But the following error comes up. Moreover tksurfer window open up but it looks like 'empty'. Please find it

attached.

...

Thank you very much!

Daniel Ferreira

-------- freesurfer-Linux-centos4-stable-pub-v4.5.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/Neuropsicologia/freesurfer FSFAST_HOME /home/Neuropsicologia/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /home/Neuropsicologia/DANI/subjects MNI_DIR /home/Neuropsicologia/freesurfer/mni FSL_DIR /home/Neuropsicologia/fsl

Neuropsicologia@linux-tand:~> cd DANI/subjects

Neuropsicologia@linux-tand:~/DANI/subjects> tksurfer GJ25_3D lh inflated -aparc -gray surfer: current subjects dir: /home/Neuropsicologia/DANI/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /home/Neuropsicologia/DANI/subjects surfer: Reading header info from /home/Neuropsicologia/DANI/subjects/GJ25_3D/mri/T1.mgz surfer: vertices=123902, faces=247800 surfer: curvature read: min=-1.349975 max=2.259740 reading colortable from annotation file... colortable with 36 entries read (originally

/autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_fin

...

al.txt) Found embedded color table in annotation. surfer: single buffered window surfer: tkoInitWindow(GJ25_3D) surfer: using interface /home/Neuropsicologia/freesurfer/lib/tcl/tksurfer.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_common.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_wrappers.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkUtils.tcl Successfully parsed tksurfer.tcl reading white matter vertex locations... %

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer