Dear Freesurfer users,
I hope you could help me with that problem. I do the recon-all preprocessing step and then I try tksurfer. But the following error comes up. Moreover tksurfer window open up but it looks like 'empty'. Please find it attached.
Thank you very much!
Daniel Ferreira
-------- freesurfer-Linux-centos4-stable-pub-v4.5.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/Neuropsicologia/freesurfer FSFAST_HOME /home/Neuropsicologia/freesurfer/fsfast FSF_OUTPUT_FORMAT nii SUBJECTS_DIR /home/Neuropsicologia/DANI/subjects MNI_DIR /home/Neuropsicologia/freesurfer/mni FSL_DIR /home/Neuropsicologia/fsl
Neuropsicologia@linux-tand:~> cd DANI/subjects
Neuropsicologia@linux-tand:~/DANI/subjects> tksurfer GJ25_3D lh inflated -aparc -gray surfer: current subjects dir: /home/Neuropsicologia/DANI/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /home/Neuropsicologia/DANI/subjects surfer: Reading header info from /home/Neuropsicologia/DANI/subjects/GJ25_3D/mri/T1.mgz surfer: vertices=123902, faces=247800 surfer: curvature read: min=-1.349975 max=2.259740 reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/amaebi_026/users/buckner_cortical_atlas/scripts/colortable_fin al.txt) Found embedded color table in annotation. surfer: single buffered window surfer: tkoInitWindow(GJ25_3D) surfer: using interface /home/Neuropsicologia/freesurfer/lib/tcl/tksurfer.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_common.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkm_wrappers.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /home/Neuropsicologia/freesurfer/lib/tcl/tkUtils.tcl Successfully parsed tksurfer.tcl reading white matter vertex locations... %
