v6 will recognize and use all the manual edits from previous versions. I don't think you need to copy aseg.mgz to aseg.presurf.mgz

On 03/01/2017 11:32 PM, Chris Adamson wrote:

Is it possible to run Freesurfer 6.0 recon-all -all on a subject previously processed with 5.3 and have 6 utilise the wm, ctrl pt and pial edits (brainmask.finalsurfs.manedit.mgz) made in the 5.3 output? Would it be ok to run -autorecon2-wm -autorecon3 after renaming aseg.mgz to aseg.presurf.mgz?

Thanks in advance?

*Dr **Chris Adamson *Research Officer, Developmental Imaging, *Murdoch Childrens Research Institute *Murdoch Childrens Research Institute Royal Children’s Hospital Flemington Road, Parkville, Victoria 3052, Australia www.mcri.edu.au http://www.mcri.edu.au/

E chris.adamson@mcri.edu.au T 03 9936 6780

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