Is it possible to run Freesurfer 6.0 recon-all -all on a subject previously processed with 5.3 and have 6 utilise the wm, ctrl pt and pial edits (brainmask.finalsurfs.manedit.mgz) made in the 5.3 output? Would it be ok to run -autorecon2-wm -autorecon3 after renaming aseg.mgz to aseg.presurf.mgz?
Thanks in advance?
Dr Chris Adamson Research Officer, Developmental Imaging, Murdoch Childrens Research Institute Murdoch Childrens Research Institute Royal Children’s Hospital Flemington Road, Parkville, Victoria 3052, Australia www.mcri.edu.auhttp://www.mcri.edu.au/ E chris.adamson@mcri.edu.au T 03 9936 6780
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