Hi Saurabh,

On Mar 4, 2014, at 07:56 , Saurabh Thakur srbhthkr@gmail.com wrote:

Hi Markus Gschwind,

I am using Matlab 7.12.0.635 (R2011a),

I am not able to read the dicom image neither brain.mgz file nor the surface file in matlab.

I have added these file in matlab directory.

Comment or error i m getting is :

for example :

...

...

load_dicom_fl(IM_0001)

??? Undefined function or variable 'IM_0001'.

2nd example :

...

...

MRIread(brain.mgz,brainMRI.hdr)

??? Undefined variable "brain" or function "brain.mgz".

You need to supply the full path to the volumes in a string, so assuming you called matlab from the same directory where brain.mgz is located, or used mat lab's "cd('/patrh/to/your/data')" to make sure you are there. Then simply calling "MRIread('brain.mgz');" should do the trick; note: only put the stuff between the double quotes into the matlab command window.

best Sebastian

I looking forward to work on matlab along with freesurfer.

Looking for your reply asap. Thanks for reply.

cheers Saurabh Thakur,

On Tue, Mar 4, 2014 at 12:17 PM, markus.gschwind@gmail.com wrote: Hi!

Can you specify what happens when you try to read the files?

On 4 mars 2014, at 06:44, Saurabh Thakur srbhthkr@gmail.com wrote:

...

Hello Freesurfer,

I am trying to runs MRIread.m file in matlab.

But it is not reading the brain.mgz or any other format.

Can u help in this regards.

Thanks in advance,

cheers Saurabh Thakur,

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Try vol = MRIread('brain.mgz')

On 03/04/2014 01:56 AM, Saurabh Thakur wrote:

Hi Markus Gschwind,

I am using Matlab 7.12.0.635 (R2011a),

I am not able to read the dicom image neither brain.mgz file nor the surface file in matlab.

I have added these file in matlab directory.

Comment or error i m getting is :

for example : *>> load_dicom_fl(IM_0001) ??? Undefined function or variable 'IM_0001'.

2nd example : *>> MRIread(brain.mgz,brainMRI.hdr) ??? Undefined variable "brain" or function "brain.mgz".*

I looking forward to work on matlab along with freesurfer.

Looking for your reply asap. Thanks for reply.

cheers Saurabh Thakur,

On Tue, Mar 4, 2014 at 12:17 PM, <markus.gschwind@gmail.com mailto:markus.gschwind@gmail.com> wrote:

Hi!

Can you specify what happens when you try to read the files?




On 4 mars 2014, at 06:44, Saurabh Thakur <srbhthkr@gmail.com
<mailto:srbhthkr@gmail.com>> wrote:

> Hello Freesurfer,
>
> I am trying to runs MRIread.m file in matlab.
>
> But it is not reading the brain.mgz or any other format.
>
> Can u help  in this regards.
>
> Thanks in advance,
>
> cheers
> Saurabh Thakur,
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person
to whom it is
> addressed. If you believe this e-mail was sent to you in error
and the e-mail
> contains patient information, please contact the Partners
Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent
to you in error
> but does not contain patient information, please contact the
sender and properly
> dispose of the e-mail.

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