I have tried with two lookup table, the freesurferColorLut one, and the simple_surface_labels2009. but none of them seems convincing. parcels look ok with the freesurfercolorlut, but label name is wrong. label name seems good with simple_surface_labels, but the value of the parcels doesn't seem to match with this lookuptable. (screenshot attached).

On Fri, Apr 21, 2017 at 9:10 AM, pierre deman-kibleur < deman.pierre@gmail.com> wrote:

Thanks,

it seems to work well. is there a way to have the good labels when looking on freeview the output volume. because with the freesurferColorLut it's not the good labels. or at least having the correspondence between values and labels on a .txt file or whatever ?

Regards, Pierre

On Thu, Apr 20, 2017 at 5:04 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

...

Hi Pierre

use, you can try mri_aparc2aseg.

cheers Bruce On Thu, 20 Apr 2017, pierre deman-kibleur wrote:

...

Hi,

Is there a way to have the destrieux parcellation on a volume format ?

.nii

...

for example. I tried to used mri_surf2vol without success for now:

mri_surf2vol --subject 0001GRE_25-11-2014 --merge /home/b67-belledone/freesurfer/subjects/0001GRE_25-11-2014/mri/T1.mgz

--so

...

/home/b67-belledone/freesurfer/subjects/0001GRE_25-11-2014/

surf/lh.orig/home/b67-belledone/freesurfer/subjects/ 0001GRE_25-11-2014/label/lh.aparc.a

...

2009s.annot --o /tmp/test.nii

Regards, Pierre

-- DEMAN Pierre Mobile : +33 7 82 57 80 94 <+33%207%2082%2057%2080%2094>

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-- DEMAN Pierre Mobile : +33 7 82 57 80 94 <+33%207%2082%2057%2080%2094>