Dear colleagues, especially Lilla Zollei,
I am trying to run mri_cvs_register on a 64-bit Mac but it crashes at the same place where other people had reported a problem. I tried updating mri_cvs_register from ftp as recommended in: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-June/018786.html but that didn't help.
The problem seems to be the exact same problem mentioned on this thread: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-December/021457....
I paste a small chunk of the log below at the point the PETSC ERROR occurs. I attach the whole log file.
Has anyone come up with a solution?
Thanks so much for your help,
Rey
... setting bc 51.75 25.0698 42.9884 -> 0 0 0 instead 51.76 25.0798 42.9984 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 77063 Total BCs = 527338 no-eqs = 209160 surf2vol(51421) malloc: *** mmap(size=251830272) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Out of memory. This could be due to allocating [0]PETSC ERROR: too large an object or bleeding by not properly [0]PETSC ERROR: destroying unneeded objects. [0]PETSC ERROR: Memory allocated 0 Memory used by process 0 [0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info. [0]PETSC ERROR: Memory requested 251828644! ...
Hi Rey, We are working on a 64 bit Mac version, but don't quite have one yet Cheers Bruce
On Mar 5, 2012, at 6:36 PM, Rey Ramirez rrramir@uw.edu wrote:
Dear colleagues, especially Lilla Zollei,
I am trying to run mri_cvs_register on a 64-bit Mac but it crashes at the same place where other people had reported a problem. I tried updating mri_cvs_register from ftp as recommended in: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-June/018786.html but that didn't help.
The problem seems to be the exact same problem mentioned on this thread: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-December/021457....
I paste a small chunk of the log below at the point the PETSC ERROR occurs. I attach the whole log file.
Has anyone come up with a solution?
Thanks so much for your help,
Rey
... setting bc 51.75 25.0698 42.9884 -> 0 0 0 instead 51.76 25.0798 42.9984 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 77063 Total BCs = 527338 no-eqs = 209160 surf2vol(51421) malloc: *** mmap(size=251830272) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Out of memory. This could be due to allocating [0]PETSC ERROR: too large an object or bleeding by not properly [0]PETSC ERROR: destroying unneeded objects. [0]PETSC ERROR: Memory allocated 0 Memory used by process 0 [0]PETSC ERROR: Try running with -malloc_dump or -malloc_log for info. [0]PETSC ERROR: Memory requested 251828644! ... -- Rey R. Ramírez, Ph.D. MEG Brain Imaging Center Institute for Learning & Brain Sciences Portage Bay Building Box 357988 University of Washington Seattle, WA 98195-7988 e-mail: rrramir@uw.edu Tel: (206) 543-6484 Fax: (206) 221-6472 Cell: (619) 709-3590
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