Hello all,
I've recently downloaded Freesurfer 5 and was going through the FSFAST tutorial. I keep on getting an error saying when I run "preproc-sess -s mgh-101.1 -fwhm 5 -per-run":
-------------------------------------------------------------- preproc-sess logfile is log/preproc-sess.log -------------------------------------------------------------- $Id: preproc-sess,v 1.31.2.4 2010/07/26 15:55:24 greve Exp $ fmri setenv FREESURFER_HOME /Applications/freesurfer setenv SUBJECTS_DIR /Applications/freesurfer/subjects Darwin copernicus.bcricwh.lan 9.7.0 Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009; root:xnu-1228.12.14~1/RELEASE_I386 i386 /Applications/freesurfer/fsfast-tutorial/my-study /Applications/freesurfer/fsfast/bin/preproc-sess -s mgh-101.1 -fwhm 5 -per-run Thu 2 Sep 2010 11:03:13 PDT instem f mc 1 f fmcpr stc 0 fmcpr sm 0 mask 1 brain mgh-101.1 Template ----------------------------- mktemplate-sess -s mgh-101.1 -d /Applications/freesurfer/fsfast-tutorial/my-study -fsd bold -update
Session: /Applications/freesurfer/fsfast-tutorial/my-study/mgh-101.1 ---------------- Thu 2 Sep 2010 11:03:13 PDT find: illegal option -- m find: illegal option -- a find: illegal option -- e find: illegal option -- p find: illegal option -- t find: illegal option -- h find: 1: No such file or directory ERROR: no run directories found
Anyone managed to encounter this problem in the past? Thanks in advance for your help!
Best Regards,
Danny Kim BC Children's Hospital
Hi Danny, sorry, that is the tutorial for the version 4.5 FSFAST. I still need to post the version 5 tutorial.
doug
Danny Kim wrote:
Hello all,
I've recently downloaded Freesurfer 5 and was going through the FSFAST tutorial. I keep on getting an error saying when I run "preproc-sess -s mgh-101.1 -fwhm 5 -per-run":
preproc-sess logfile is log/preproc-sess.log
$Id: preproc-sess,v 1.31.2.4 2010/07/26 15:55:24 greve Exp $ fmri setenv FREESURFER_HOME /Applications/freesurfer
setenv SUBJECTS_DIR /Applications/freesurfer/subjects Darwin copernicus.bcricwh.lan 9.7.0 Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009; root:xnu-1228.12.14~1/RELEASE_I386 i386 /Applications/freesurfer/fsfast-tutorial/my-study
/Applications/freesurfer/fsfast/bin/preproc-sess -s mgh-101.1 -fwhm 5 -per-run Thu 2 Sep 2010 11:03:13 PDT instem f mc 1 f fmcpr stc 0 fmcpr sm 0 mask 1 brain mgh-101.1 Template -----------------------------
mktemplate-sess -s mgh-101.1 -d /Applications/freesurfer/fsfast-tutorial/my-study -fsd bold -update
Session: /Applications/freesurfer/fsfast-tutorial/my-study/mgh-101.1 ---------------- Thu 2 Sep 2010 11:03:13 PDT
find: illegal option -- m find: illegal option -- a find: illegal option -- e find: illegal option -- p find: illegal option -- t find: illegal option -- h find: 1: No such file or directory ERROR: no run directories found Anyone managed to encounter this problem in the past? Thanks in advance for your help!
Best Regards,
Danny Kim BC Children's Hospital
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu