Hi Danny, sorry, that is the tutorial for the version 4.5 FSFAST. I still need to post the version 5 tutorial.

doug

Danny Kim wrote:

Hello all,

I've recently downloaded Freesurfer 5 and was going through the FSFAST tutorial. I keep on getting an error saying when I run "preproc-sess -s mgh-101.1 -fwhm 5 -per-run":

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preproc-sess logfile is log/preproc-sess.log

$Id: preproc-sess,v 1.31.2.4 2010/07/26 15:55:24 greve Exp $ fmri setenv FREESURFER_HOME /Applications/freesurfer

setenv SUBJECTS_DIR /Applications/freesurfer/subjects Darwin copernicus.bcricwh.lan 9.7.0 Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009; root:xnu-1228.12.14~1/RELEASE_I386 i386 /Applications/freesurfer/fsfast-tutorial/my-study

/Applications/freesurfer/fsfast/bin/preproc-sess -s mgh-101.1 -fwhm 5 -per-run Thu 2 Sep 2010 11:03:13 PDT instem f mc 1 f fmcpr stc 0 fmcpr sm 0 mask 1 brain mgh-101.1 Template -----------------------------

mktemplate-sess -s mgh-101.1 -d /Applications/freesurfer/fsfast-tutorial/my-study -fsd bold -update

Session: /Applications/freesurfer/fsfast-tutorial/my-study/mgh-101.1 ---------------- Thu 2 Sep 2010 11:03:13 PDT

find: illegal option -- m find: illegal option -- a find: illegal option -- e find: illegal option -- p find: illegal option -- t find: illegal option -- h find: 1: No such file or directory ERROR: no run directories found Anyone managed to encounter this problem in the past? Thanks in advance for your help!

Best Regards,

Danny Kim BC Children's Hospital

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