No, not  easily. I think the field of view must be lower in that dimension and so it is cropping.

On 5/28/2021 3:23 PM, Melissa Marie Rundle wrote:

External Email - Use Caution

Hi,

I am using mri_convert to change the orientation of an image in its native space from LPS  to PSR.

Ex. Mri_convert –out_orientation PSR input_file output_file

Sometime when I do this, I lose the last coronal slice(s) of the occipital lobe when the image is converted to PSR.  Is there some way to ensure that when I change the orientation, I get the whole brain back?

Thanks,

Melissa

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer