Hi Bruce My command line is cd $SUBJECTS_DIR/subjid/surf mri_surf2surf \ --s con_52 \ #It is my Processed freesurfer date --trgsubject fsaverage \ --hemi lh \ --sval lh.thickness \ --tval lh.thickness.fsaverage.mgh \ --reshape #or reshape-factor 7 Zhu
-----Original E-mail----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu Sent Time: 2012-9-6 20:15:35 To: zzy7758@mail.ustc.edu.cn Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_surf2surf error
Hi Zhu
what is your command line?
Bruce
On Thu, 6 Sep 2012, zzy7758@mail.ustc.edu.cn wrote:
Hi Freesurfers,
I'm trying to extracting thickness value for a ROI which is created by afni.I follow the workflows of "Cortical Thickness of a Volume-defined ROI". The ROI mask and T1 volume file are all talairach transformed. When I map the thickness data to the fsaverage subject with mri_surf2surf,an error occured: "dimension inconsistency in source data Number of surface vertices =154984 Number of value vertices =163842"(23406*1*7) So I use reshape-factor 7 flag ,but it does not work, how can I fix this? Any advise would be appreciated!
best Zhu
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can you send the full screen output as well? On Thu, 6 Sep 2012, zzy7758@mail.ustc.edu.cn wrote:
Hi Bruce My command line is cd $SUBJECTS_DIR/subjid/surf mri_surf2surf \ --s con_52 \ #It is my Processed freesurfer date --trgsubject fsaverage \ --hemi lh \ --sval lh.thickness \ --tval lh.thickness.fsaverage.mgh \ --reshape #or reshape-factor 7 Zhu
-----Original E-mail----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu Sent Time: 2012-9-6 20:15:35 To: zzy7758@mail.ustc.edu.cn Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_surf2surf error
Hi Zhu
what is your command line?
Bruce
On Thu, 6 Sep 2012, zzy7758@mail.ustc.edu.cn wrote:
Hi Freesurfers,
I'm trying to extracting thickness value for a ROI which is created by afni.I follow the workflows of "Cortical Thickness of a Volume-defined ROI". The ROI mask and T1 volume file are all talairach transformed. When I map the thickness data to the fsaverage subject with mri_surf2surf,an error occured: "dimension inconsistency in source data Number of surface vertices =154984 Number of value vertices =163842"(23406*1*7) So I use reshape-factor 7 flag ,but it does not work, how can I fix this? Any advise would be appreciated!
best Zhu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Try using --srcsubject instead of --s. Also, remember to include the terminal output. Also, there's probably no need to reshape it. doug
On 09/06/2012 10:54 AM, zzy7758@mail.ustc.edu.cn wrote:
Hi Bruce My command line is cd $SUBJECTS_DIR/subjid/surf mri_surf2surf \ --s con_52 \ #It is my Processed freesurfer date --trgsubject fsaverage \ --hemi lh \ --sval lh.thickness \ --tval lh.thickness.fsaverage.mgh \ --reshape #or reshape-factor 7 Zhu
-----Original E-mail----- From: "Bruce Fischl"fischl@nmr.mgh.harvard.edu Sent Time: 2012-9-6 20:15:35 To: zzy7758@mail.ustc.edu.cn Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mri_surf2surf error
Hi Zhu
what is your command line?
Bruce
On Thu, 6 Sep 2012, zzy7758@mail.ustc.edu.cn wrote:
Hi Freesurfers,
I'm trying to extracting thickness value for a ROI which is created by afni.I follow the workflows of "Cortical Thickness of a Volume-defined ROI". The ROI mask and T1 volume file are all talairach transformed. When I map the thickness data to the fsaverage subject with mri_surf2surf,an error occured: "dimension inconsistency in source data Number of surface vertices =154984 Number of value vertices =163842"(23406*1*7) So I use reshape-factor 7 flag ,but it does not work, how can I fix this? Any advise would be appreciated!
best Zhu
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Douglas N Greve -
zzy7758＠mail.ustc.edu.cn