it says it cannot find /XYZ/2123.nii probably this file does not exist

On 2/28/19 10:09 AM, Boris Rauchmann wrote:

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Hi FreeSurfer community,

when I run mri_coreg I get the following error.  /XYZ/2123/mri/brainmask.mgz is in the specified location.

Can you help me with this?

Thanks! Boris

mri_coreg --s 2123 --mov /XYZ/2123.nii --reg 2123.reg.lta Could not set locale No such file or directory Could not set locale

$Id: mri_coreg.c,v 1.27 2016/04/30 15:11:49 greve Exp $ cwd /home/demenzbild cmdline mri_coreg --s 2123 --mov /XYZ/2123.nii --reg 2123.reg.lta sysname  Linux hostname XXX machine  x86_64 user     d dof    6 nsep    2 cras0    1 ftol    0.000000 linmintol    0.001000 bf       1 bflim    30.000000 bfnsamp    30 SmoothRef 0 SatPct    99.990000 MovOOB 0 optschema 1 Reading in mov /XYZ/2123.nii WARNING: 78694 NaNs found in volume /XYZ/2123.nii...

No such file or directory Reading in ref /XYZ/2123/mri/brainmask.mgz mghRead(/XYZ/2123/mri/brainmask.mgz, -1): could not open file

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