Dear Freesurfer experts,
I am currently trying to obtain mean thickness values for certain
sub-regions of the cortex. I have previously used this command
asegstats2table --subjects X_* --meas thickness --tablefile aseg_stats.txt
however now (Ive updated to v 5.3) I receive this error
asegstats2table: error: option --meas: invalid choice: 'thickness'
(choose from 'volume', 'Area_mm2', 'nvoxels', 'nvertices', 'mean',
'std', 'snr', 'max')
Has the thickness option been taken away? If this is the case, should
I use mris_anatomical stats for labels instead? Or is there still a
way to use asegstats2table for subregions (for example for anterior
cingulate? Eg in aseg_stats to table I can get the volumes but not
thickness values for caudal anterior cingulate?)
Thanks for your help!
Best Wishes,
Cathy
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