I think I gave you the wrong command line for mri_label2vol. Try added
--invertmtx to the command line. Sorry for the wild goose chase.
doug
On 08/06/2013 04:00 PM, Mark Plantz wrote:
> The bbregister output looks like a typical intensity volume [attached].
>
> Out of curiosity, I ran mri_label2vol with a different segmentation
> volume (the aparc+aseg default). It looks like the images are not
> inverted, but the sagittal has been switched with the coronal view. Is
> it possible that my version of mri_label2mri has a bug?
>
>
>
>
> On Tue, Aug 6, 2013 at 2:46 PM, Douglas N Greve
> <greve(a)nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>
> What happens if you load the output of bbregister?
>
>
> On 08/06/2013 03:30 PM, Mark Plantz wrote:
>
> The output of bbregister is actually fine. It seems like the
> inversion happens after mri_label2vol is run. I am currently
> viewing in FreeView, but the tkmedit command is:
>
> tkmedit CMH-8169 001.mgz -segmentation
> /Applications/freesurfer/subjects/CMH-8169/mri/output.mgz
>
> LoadSegmentationVolume main
> /Applications/freesurfer/subjects/CMH-8169/mri/output.mgz
> /Applications/freesurfer/FreeSurferColorLUT.txt
> Reading /Applications/freesurfer/tktools/tkm_common.tcl
> Reading /Applications/freesurfer/tktools/tkm_wrappers.tcl
> Reading /Applications/freesurfer/lib/tcl/fsgdfPlot.tcl
> Reading /Applications/freesurfer/tktools/tkUtils.tcl
>
>
>
>
>
> On Tue, Aug 6, 2013 at 12:59 PM, Douglas N Greve
> <greve(a)nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>
> That all looks right, and the number of labels = 0 is not a
> problem. Is the output of bbregister flipped? What is your
> tkmedit
> command?
> doug
>
>
> On 08/06/2013 10:13 AM, Mark Plantz wrote:
>
> I think that the registration turned out ok [well it isn't
> upside down]. I attached a few screenshots.
>
> My bbregister command is:
>
> *bbregister --s CMH-8169 --mov
>
> /Volumes/Wong_Lab/CochlearImplant/UNC_NiFTI/infant-1yr-mgz/seg.mgz
> --init-fsl --reg
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> --t1 --o
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/output.mgz*
> *
>
> *
> Subsequently, my mri_label2vol command is:
>
> *ingvalsons-imac:~ IngvalsonLab$ mri_label2vol --seg
>
> /Volumes/Wong_Lab/CochlearImplant/UNC_NiFTI/infant-1yr-mgz/seg.mgz
> --temp
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/output.mgz
> --reg
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> --o /Users/IngvalsonLab/Desktop/output.mgz *
>
>
> Number of labels: 0
> Annot File: (null)
> Template Volume:
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/output.mgz
> Outut Volume: /Users/IngvalsonLab/Desktop/output.mgz
> Registration File:
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> Fill Threshold: 0
> Label Vox Vol: 1
> ProjType: (null)
> ProjTypeId: 0
> ProjStart: 0
> ProjStop: 0
> ProjDelta: 0.1
> Subject: (null)
> Hemi: (null)
> UseNewASeg2Vol: 1
> DoLabelStatVol 0
> LabelCodeOffset 0
> setenv SUBJECTS_DIR /Applications/freesurfer/subjects
> $Id: mri_label2vol.c,v 1.34.2.5 2012/06/08 17:31:03
> greve Exp $
> Template RAS-to-Vox: --------
> -1.000 0.000 0.000 128.000;
> -0.000 -0.000 -1.000 128.000;
> -0.000 1.000 -0.000 128.000;
> 0.000 0.000 0.000 1.000;
> Template Voxel Volume: 1
> nHits Thresh: 0
> Loading registration from
>
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> RegMat: --------
> -0.994 -0.098 0.042 0.715;
> 0.043 -0.001 0.999 -14.682;
> 0.097 -0.995 -0.005 2.026;
> 0.000 0.000 0.000 1.000;
> Label RAS-to-Vox: --------
> 0.994 0.098 -0.042 127.285;
> -0.097 0.995 0.005 125.974;
> 0.043 -0.001 0.999 113.318;
> 0.000 0.000 0.000 1.000;
> ASeg2Vol: Building LUT
> ASeg2Vol: Sorting
> ASeg2Vol: Mapping
> ASeg2Vol: Reverse Map
> nmisses = 9739499 (73560 filled)
> ASeg2Vol: done
> ingvalsons-imac:~ IngvalsonLab$
>
>
> Is it significant that number of labels = 0? Or is that
> because I am using a segmentation volume instead of an
> actual
> .label file?
>
> Other than that, I cannot seem to determine why the output
> images would be inverted by 180 degrees.
>
> Thank you in advance
> MP
>
>
>
>
> On Mon, Aug 5, 2013 at 4:26 PM, Douglas Greve
> <greve(a)nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>
>
> did you look at the registration with tkregister2?
> When
> bbregister
> finished, it would have printed out the command
> line to
> run (it is
> also at the end of the log file). If that looks
> ok, please
> send
> your bbregister command.
> doug
>
>
> On 8/5/13 1:47 PM, Mark Plantz wrote:
>
> Thanks Doug. mri_label2vol worked well, except it
> looks like all
> of the files are inverted by 90 degrees. They
> appear
> inverted in
> both tkmedit and 'FreeView.' I read that
> inversions
> are common in
> "fslview" but not in tkmedit. Any idea what
> could be
> causing this
> problem?
>
> My command line is:
>
> *mri_label2vol --seg
>
>
> /Volumes/Wong_Lab/CochlearImplant/UNC_NiFTI/infant-1yr-mgz/seg.mgz
> --temp
> /Users/IngvalsonLab/Desktop/temp.mgz --o
> seg_new.mgz --reg
> register.dat*
> *
>
> *
> I didn't encounter any errors with
> mri_label2vol nor
> bbregister
> [which was used to generate register.dat and
> temp.mgz].
>
> Any ideas what could be causing this problem?
>
> I can attach more images if this one doesn't
> portray the
> inversion well.
>
> Thanks a lot
>
> MP
>
>
> On Mon, Aug 5, 2013 at 10:12 AM, Douglas Greve
> <greve(a)nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>
>
> The file that you pass it with the --reg
> option is the
> registration file (eg, --reg
> register.dat). This
> can be used
> for input to mri_vol2vol or mri_label2vol.
> mri_label2vol is
> appropriate for a segmetation
>
> doug
>
>
>
> On 8/5/13 10:22 AM, Mark Plantz wrote:
>
> Thank you. Do you know how to access the
> transform that is
> outputted by bbregister. I am just
> obtaining
> an output
> volume <volume.mgz>>?
>
>
> On Thu, Aug 1, 2013 at 3:56 PM, Bruce
> Fischl
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>> wrote:
>
> Hi Mark
>
> you can use the transform that
> bbregister
> outputs and
> give it to mri_convert with -at
> <transform
> name>
>
> cheers
>
> Bruce
>
>
> On Thu, 1 Aug 2013, Mark Plantz wrote:
>
> One last question: Is there
> any flag I
> can use with
> 'bbregister' that
> prevents the labels from
> changing in
> my segmentation
> volume? This is
> occuring because the volume
> that I am
> moving has
> labels. For some reason,
> the labels change ever so
> slightly in
> the output file.
>
>
> On Thu, Aug 1, 2013 at 2:28
> PM, Bruce
> Fischl
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
> wrote:
> glad it worked out
> Bruce
> On Thu, 1 Aug 2013, Mark
> Plantz
> wrote:
>
> Just as an update, it
> turns out that my
> segmentation
> volume had been
> slightly altered
> during
> the conversion
> from .nii to
> .mgz. I completely
> forgot to use the -rt
> nearest flag to
> prevent the
> labels from becoming
> distorted. That is
> why the
> segmentation
> looked so
> fuzzy with various
> regions
> labeled incorrectly.
> Apparently, I should check
> the basics before
> overcomplicating the problem,
> haha. Thanks for
> the help
> everyone!
>
>
> On Thu, Aug 1, 2013 at
> 9:36 AM, Mark Plantz
> <markplantz2016(a)u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>>
>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>
>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>>>> wrote:
> Sounds good. I also
> just realized
> that the
> segmentation values
> are varying from
> 0-255, which
> makes me think
> that the file is
> only
> designed for the
> grayscale/heat/etc.
> settings [where 0 is
> darkest regions and
> 255 is
> brightest regions].
> Is that a valid
> assumption? Also, if this is
> the case,
> would
> it be impossible to
> create a .gca file using
> mri_ca_train with
> these files?
> Thanks for the help.
>
> MP
>
>
> On Wed, Jul 31,
> 2013 at
> 8:43 PM, Douglas
> Greve
>
> <greve(a)nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>
> Just make
> sure that
> you create a
> new file and
> do not
> repeat index numbers.
>
>
> On 7/31/13
> 2:02 PM,
> Mark Plantz wrote:
> That makes
> sense.
> Wouldn't that
> cause there to
> be
> some overlap
> between
> different
> regions, since
> the
> same index
> #'s used
> by the two
> programs
> (FreeSurfer
> & MRIcro) correspond
> to different
> brain
> regions?
>
>
> On Tue, Jul 30,
> 2013 at
> 12:50 PM,
> Douglas Greve
>
> <greve(a)nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>
> for every
> line in
> that file, you
> will need to
> create a line in the
> new LUT,
> something like
>
>
> 8
> Frontal_Mid_R 0
> 255 0 0
>
> This will
> make the
> right mid
> frontal green =
> (0,255,0)
>
>
>
>
> On 7/30/13
> 9:55 AM,
> Mark Plantz wrote:
> Hmm, so I
> received
> the text part
> of the
> LUT. Looks
> like this
> is completely
> different from the segmented
> regions
> that we
> would want.
> [attached]. Can't
> seem to
> understand
> how this text file
> could be related to
> the default
> FreeSurfer LUT. It looks like the
> labeling for an AAL
> map. This probably
> wont' work will it?
> - Mark
>
>
> On Tue, Jul 30,
> 2013 at
> 8:47 AM, Bruce
> Fischl
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>> wrote:
> the UNC one?
> No, you
> should ask
> them
> On Tue, 30
> Jul 2013,
> Mark Plantz
> wrote:
>
>
>
> ---------- Forwarded message
> ----------
> From: Mark
> Plantz
> <markplantz2016(a)u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>>
>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>
>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>>>>
>
> Date: Tue,
> Jul 30,
> 2013 at
> 8:39 AM
> Subject: Re:
> [Freesurfer]
> infant atlas
> segmentation
> To: Bruce Fischl
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
>
>
> Just opened
> up the
> default
> FreeSurferColorLUT.txt file.
> So it looks
> like all
> I have to
> change is
> the #No.
> column of the file,
> to match
> the ones in the
> other LUT used.
> I actually just
> received the
> MRIcro .lut file
> from the
> UNC group.
> [attached]
>
> Hopefully this will help
> with the
> conversion.
> However, I still have to
> figure out how to
> open the
> file. Any ideas?
>
>
>
>
> On Tue, Jul
> 30, 2013
> at 8:25
> AM, Bruce Fischl
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
> wrote:
> Hi Mark
>
> creating a FreeSurfer
> LUT really isn't
> that hard.
> Have you
> looked at our standard
> one? Probably we
> have the
> names you
> already want and you
> just need to
> change our
> indices to match
> the ones in your
> segmentation file (and save
> it as a
> different
> LUT)
>
> cheers
> Bruce
>
> On Tue, 30 Jul
> 2013,
> Mark Plantz
> wrote:
>
> Turns out that
> the files
> had been
> labeled
> using a
> color LUT in a
> program
> called MRIcro. I
> am now
> installing this
> program
> simply to access
> the LUT.
> Will it be as
> simple as exchanging the
> index values
> from this LUT to
> a
> custom LUT in
> FreeSurfer?
>
>
> On Tue, Jul 30,
> 2013 at
> 12:35 AM,
> Douglas
> Greve
>
> <greve(a)nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
>
> wrote:
>
> The
> problem is that you
> need to
> create a
> completely new
> LUT. The
> labels
> that get
> displayed
> with the
> standard
> LUT are going to
> be
> totally
> random with respect
> to what
> they
> should display.
>
> On 7/29/13
> 2:20 PM,
> Mark Plantz
> wrote:
> Hi Doug,
> Thanks for the
> reply. I will
> definitely go
> into
> the LUT and
> change those
> values to some specific
> region. My main
> concern is
> that I think all
> of these
> "out of bounds"
> labels are
> the
> symptoms of some
> larger problem. The
> segmentation
> looks very
> strange as
> compared to a typical
> segmentation (i.e.
> an
> 'aseg.mgz'
> file). In fact, the
> segmentation appears
> to be
> labeling
> "left-<region" in the right
> hemisphere.
> Have you seen a
> segmentation
> file that
> looks like the
> once I
> attached before?
> I
> am used to
> seeing segmentation
> files
> such as the one
> attached to
> this e-mail.
>
> - Mark
>
>
> On Mon, Jul 29,
> 2013 at
> 12:28 PM,
> Douglas
> Greve
>
> <greve(a)nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>
>
> <mailto:greve@nmr.mgh.harvard.edu
> <mailto:greve@nmr.mgh.harvard.edu>>>>
>
> wrote:
>
> Mark, the
> only thing
> that is wrong
> with the
> out of
> bounds
> regions is that they
> are not
> represented in
> the LUT.
> Once you add
> an index
> corresponding
> to the
> index of
> the
> segmentation to
> the LUT,
> it will
> not
> show up as
> "out of
> bounds". The
> brain
> mask has
> nothing to
> do with it.
> best
> doug
>
>
>
> On 7/29/13
> 12:50 PM, Mark
> Plantz wrote:
> Sorry
> about that. I
> received the
> manual
>
> segmentations from
> aUNCmedicalgroup<http://www.med.unc.edu/bric/ideagroup/free-softwares/unc-in
> fan
> t-0-1-2
> -atla
> ses>. I
> actually asked the main
> researcher
> about the
> out of bounds
> regions. He
> thinks
> that as
> long as the
> segmented file
> lines up
> with the
> input volumes, a few
> out of
> bounds
> regions
> might be OK.
> However, these
> seg
> volumes
> look very
> different
> from a
> typical
> .aseg
> volume that I am used to
> seeing after
> recon-all
> is run.
> Maybe the
> segmentation is simply
> incompatible with
> FreeSurfer?
>
> Thanks for the
> help. These files are a
> nightmare!
>
> - MP
>
>
> On Mon, Jul 29,
> 2013 at
> 11:40 AM, Bruce
> Fischl
>
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
> wrote:
> can you cc
> the list please?
> Maybe we
> should
> start over. Where
> did you
> get the
> manual
> segmentations from?
>
> On Mon, 29
> Jul 2013, Mark
> Plantz wrote:
>
> Ahh,
> right. So it looks like
> the
> red regions
> appear to be
>
> averaged around 248.
> I am
> not
> sure why
> that is the
> case
> or if it has
> any
> significance. I attached
> a
> screen shot for
>
> reference.
>
>
> On
> Mon, Jul 29,
> 2013 at
>
> 11:29 AM, Bruce Fischl
>
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
>
> wrote:
>
> it isn't a
>
> registration file. You
>
> should just specify
> it as a
>
> volume on the freeview
>
> command line, the
> same as
>
> brainmask.mgz
>
>
> On Mon, 29
> Jul 2013,
> Mark
> Plantz wrote:
>
>
> I actually tried
> to
> view the
> brainmask.mgz
> file
> with the
> segmentation
> file
> [Freeview calls it
>
> 'registration
>
> file' I believe].
>
> For some reason,
> the
> file will
> load without
>
> segmentation, but when I
>
> attempt to add the
>
> registration
>
> file, I get an
>
> error
>
> message:
>
> "Failed to load
> MRI
>
> ~/.../../../brainmask.mgz
>
>
> Could this
>
> potentially be part of the
>
> problem?
>
>
> Thanks
>
>
> MP
>
>
>
> On Mon, Jul 29,
> 2013
> at 10:57 AM,
> Mark
>
> Plantz
>
> <markplantz2016(a)u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>>
>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>
>
> <mailto:markplantz2016@u.northwestern.edu
> <mailto:markplantz2016@u.northwestern.edu>>>>
>
>
> wrote:
>
>
> It looks
> like
> the values
> vary from
>
> 20-120
> depending on
> which
>
> region I run
> the cursor
>
> over.
>
> However, aren't
>
> those the
>
> values
> that
> correspond to the
>
> brain.mgz regions? Is there
>
> another way to find the
>
> segmentation
>
> values?
>
>
>
> On Mon, Jul 29,
> 2013
> at 10:37 AM,
> Bruce
>
> Fischl
>
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
>
> wrote:
>
> I mean the
>
> segmentation values that
> give
> you the "out
> of bounds"
>
> message
>
> On Mon, 29
> Jul
> 2013, Mark Plantz wrote:
>
>
> Hi
>
> Bruce,
>
> Do
> you
> mean the
> brainmask.mgz
>
> values? I'm not sure
> what
> the
> segmentation #'s exactly
> are.
>
>
>
>
> Thanks!
>
>
> MP
>
>
>
> On
> Mon,
> Jul 29, 2013
> at 10:17
> AM,
> Bruce Fischl
>
> <fischl(a)nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>
>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>
> <mailto:fischl@nmr.mgh.harvard.edu
> <mailto:fischl@nmr.mgh.harvard.edu>>>>
>
>
> wrote:
>
>
> Hi
>
> ...
>
> [Message clipped]
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve(a)nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
1
0
Dear FreeSurfer Experts,
Theoretically, if you have a set of functional ROIs, is it possible to derive the cortical thickness, white surface area, and gray matter volume of those functional ROIs in FreeSurfer?
Many thanks!!
Daniel
--
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454
3
7
The output of bbregister is actually fine. It seems like the inversion
happens after mri_label2vol is run. I am currently viewing in FreeView, but
the tkmedit command is:
tkmedit CMH-8169 001.mgz -segmentation
/Applications/freesurfer/subjects/CMH-8169/mri/output.mgz
LoadSegmentationVolume main
/Applications/freesurfer/subjects/CMH-8169/mri/output.mgz
/Applications/freesurfer/FreeSurferColorLUT.txt
Reading /Applications/freesurfer/tktools/tkm_common.tcl
Reading /Applications/freesurfer/tktools/tkm_wrappers.tcl
Reading /Applications/freesurfer/lib/tcl/fsgdfPlot.tcl
Reading /Applications/freesurfer/tktools/tkUtils.tcl
On Tue, Aug 6, 2013 at 12:59 PM, Douglas N Greve
<greve(a)nmr.mgh.harvard.edu>wrote:
> That all looks right, and the number of labels = 0 is not a problem. Is
> the output of bbregister flipped? What is your tkmedit command?
> doug
>
>
> On 08/06/2013 10:13 AM, Mark Plantz wrote:
>
>> I think that the registration turned out ok [well it isn't upside down].
>> I attached a few screenshots.
>>
>> My bbregister command is:
>>
>> *bbregister --s CMH-8169 --mov /Volumes/Wong_Lab/**
>> CochlearImplant/UNC_NiFTI/**infant-1yr-mgz/seg.mgz --init-fsl --reg
>> /Volumes/Wong_Lab/LabMRIData/**FreeSurfer/CMH-8169/**bbregister/register.dat
>> --t1 --o /Volumes/Wong_Lab/LabMRIData/**FreeSurfer/CMH-8169/**
>> bbregister/output.mgz*
>> *
>>
>> *
>> Subsequently, my mri_label2vol command is:
>>
>> *ingvalsons-imac:~ IngvalsonLab$ mri_label2vol --seg /Volumes/Wong_Lab/**
>> CochlearImplant/UNC_NiFTI/**infant-1yr-mgz/seg.mgz --temp
>> /Volumes/Wong_Lab/LabMRIData/**FreeSurfer/CMH-8169/**bbregister/output.mgz
>> --reg /Volumes/Wong_Lab/LabMRIData/**FreeSurfer/CMH-8169/**bbregister/register.dat
>> --o /Users/IngvalsonLab/Desktop/**output.mgz *
>>
>>
>> Number of labels: 0
>> Annot File: (null)
>> Template Volume: /Volumes/Wong_Lab/LabMRIData/**FreeSurfer/CMH-8169/**
>> bbregister/output.mgz
>> Outut Volume: /Users/IngvalsonLab/Desktop/**output.mgz
>> Registration File: /Volumes/Wong_Lab/LabMRIData/**FreeSurfer/CMH-8169/**
>> bbregister/register.dat
>> Fill Threshold: 0
>> Label Vox Vol: 1
>> ProjType: (null)
>> ProjTypeId: 0
>> ProjStart: 0
>> ProjStop: 0
>> ProjDelta: 0.1
>> Subject: (null)
>> Hemi: (null)
>> UseNewASeg2Vol: 1
>> DoLabelStatVol 0
>> LabelCodeOffset 0
>> setenv SUBJECTS_DIR /Applications/freesurfer/**subjects
>> $Id: mri_label2vol.c,v 1.34.2.5 2012/06/08 17:31:03 greve Exp $
>> Template RAS-to-Vox: --------
>> -1.000 0.000 0.000 128.000;
>> -0.000 -0.000 -1.000 128.000;
>> -0.000 1.000 -0.000 128.000;
>> 0.000 0.000 0.000 1.000;
>> Template Voxel Volume: 1
>> nHits Thresh: 0
>> Loading registration from /Volumes/Wong_Lab/LabMRIData/**
>> FreeSurfer/CMH-8169/**bbregister/register.dat
>> RegMat: --------
>> -0.994 -0.098 0.042 0.715;
>> 0.043 -0.001 0.999 -14.682;
>> 0.097 -0.995 -0.005 2.026;
>> 0.000 0.000 0.000 1.000;
>> Label RAS-to-Vox: --------
>> 0.994 0.098 -0.042 127.285;
>> -0.097 0.995 0.005 125.974;
>> 0.043 -0.001 0.999 113.318;
>> 0.000 0.000 0.000 1.000;
>> ASeg2Vol: Building LUT
>> ASeg2Vol: Sorting
>> ASeg2Vol: Mapping
>> ASeg2Vol: Reverse Map
>> nmisses = 9739499 (73560 filled)
>> ASeg2Vol: done
>> ingvalsons-imac:~ IngvalsonLab$
>>
>>
>> Is it significant that number of labels = 0? Or is that because I am
>> using a segmentation volume instead of an actual .label file?
>>
>> Other than that, I cannot seem to determine why the output images would
>> be inverted by 180 degrees.
>>
>> Thank you in advance
>> MP
>>
>>
>>
>>
>> On Mon, Aug 5, 2013 at 4:26 PM, Douglas Greve <greve(a)nmr.mgh.harvard.edu<mailto:
>> greve(a)nmr.mgh.harvard.**edu <greve(a)nmr.mgh.harvard.edu>>> wrote:
>>
>>
>> did you look at the registration with tkregister2? When bbregister
>> finished, it would have printed out the command line to run (it is
>> also at the end of the log file). If that looks ok, please send
>> your bbregister command.
>> doug
>>
>>
>> On 8/5/13 1:47 PM, Mark Plantz wrote:
>>
>>> Thanks Doug. mri_label2vol worked well, except it looks like all
>>> of the files are inverted by 90 degrees. They appear inverted in
>>> both tkmedit and 'FreeView.' I read that inversions are common in
>>> "fslview" but not in tkmedit. Any idea what could be causing this
>>> problem?
>>>
>>> My command line is:
>>>
>>> *mri_label2vol --seg
>>>
>>> /Volumes/Wong_Lab/**CochlearImplant/UNC_NiFTI/**infant-1yr-mgz/seg.mgz
>>> --temp
>>> /Users/IngvalsonLab/Desktop/**temp.mgz --o seg_new.mgz --reg
>>> register.dat*
>>> *
>>>
>>> *
>>> I didn't encounter any errors with mri_label2vol nor bbregister
>>> [which was used to generate register.dat and temp.mgz].
>>>
>>> Any ideas what could be causing this problem?
>>>
>>> I can attach more images if this one doesn't portray the
>>> inversion well.
>>>
>>> Thanks a lot
>>>
>>> MP
>>>
>>>
>>> On Mon, Aug 5, 2013 at 10:12 AM, Douglas Greve
>>> <greve(a)nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.**edu<greve(a)nmr.mgh.harvard.edu>>>
>>> wrote:
>>>
>>>
>>> The file that you pass it with the --reg option is the
>>> registration file (eg, --reg register.dat). This can be used
>>> for input to mri_vol2vol or mri_label2vol. mri_label2vol is
>>> appropriate for a segmetation
>>>
>>> doug
>>>
>>>
>>>
>>> On 8/5/13 10:22 AM, Mark Plantz wrote:
>>>
>>>> Thank you. Do you know how to access the transform that is
>>>> outputted by bbregister. I am just obtaining an output
>>>> volume <volume.mgz>>?
>>>>
>>>>
>>>> On Thu, Aug 1, 2013 at 3:56 PM, Bruce Fischl
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>>>
>>>> wrote:
>>>>
>>>> Hi Mark
>>>>
>>>> you can use the transform that bbregister outputs and
>>>> give it to mri_convert with -at <transform name>
>>>>
>>>> cheers
>>>>
>>>> Bruce
>>>>
>>>>
>>>> On Thu, 1 Aug 2013, Mark Plantz wrote:
>>>>
>>>> One last question: Is there any flag I can use with
>>>> 'bbregister' that
>>>> prevents the labels from changing in my segmentation
>>>> volume? This is
>>>> occuring because the volume that I am moving has
>>>> labels. For some reason,
>>>> the labels change ever so slightly in the output file.
>>>>
>>>>
>>>> On Thu, Aug 1, 2013 at 2:28 PM, Bruce Fischl
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>> wrote:
>>>> glad it worked out
>>>> Bruce
>>>> On Thu, 1 Aug 2013, Mark Plantz wrote:
>>>>
>>>> Just as an update, it turns out that my
>>>> segmentation
>>>> volume had been
>>>> slightly altered during the conversion
>>>> from .nii to
>>>> .mgz. I completely
>>>> forgot to use the -rt nearest flag to
>>>> prevent the
>>>> labels from becoming
>>>> distorted. That is why the segmentation
>>>> looked so
>>>> fuzzy with various regions
>>>> labeled incorrectly.
>>>> Apparently, I should check the basics before
>>>> overcomplicating the problem,
>>>> haha. Thanks for the help everyone!
>>>>
>>>>
>>>> On Thu, Aug 1, 2013 at 9:36 AM, Mark Plantz
>>>> <markplantz2016(a)u.**northwestern.edu<markplantz2016(a)u.northwestern.edu>
>>>> <mailto:markplantz2016@u.**northwestern.edu<markplantz2016(a)u.northwestern.edu>>>
>>>> wrote:
>>>> Sounds good. I also just realized
>>>> that the
>>>> segmentation values
>>>> are varying from 0-255, which
>>>> makes me think
>>>> that the file is
>>>> only designed for the
>>>> grayscale/heat/etc.
>>>> settings [where 0 is
>>>> darkest regions and 255 is
>>>> brightest regions].
>>>> Is that a valid
>>>> assumption? Also, if this is the case, would
>>>> it be impossible to
>>>> create a .gca file using
>>>> mri_ca_train with
>>>> these files?
>>>> Thanks for the help.
>>>>
>>>> MP
>>>>
>>>>
>>>> On Wed, Jul 31, 2013 at 8:43 PM, Douglas
>>>> Greve
>>>> <greve(a)nmr.mgh.harvard.edu
>>>> <mailto:greve@nmr.mgh.harvard.**edu<greve(a)nmr.mgh.harvard.edu>>>
>>>> wrote:
>>>>
>>>> Just make sure that you create a
>>>> new file and
>>>> do not
>>>> repeat index numbers.
>>>>
>>>>
>>>> On 7/31/13 2:02 PM, Mark Plantz wrote:
>>>> That makes sense. Wouldn't that
>>>> cause there to
>>>> be
>>>> some overlap between different
>>>> regions, since
>>>> the
>>>> same index #'s used by the two
>>>> programs
>>>> (FreeSurfer
>>>> & MRIcro) correspond to different
>>>> brain
>>>> regions?
>>>>
>>>>
>>>> On Tue, Jul 30, 2013 at 12:50 PM,
>>>> Douglas Greve
>>>> <greve(a)nmr.mgh.harvard.edu
>>>> <mailto:greve@nmr.mgh.harvard.**edu<greve(a)nmr.mgh.harvard.edu>>>
>>>> wrote:
>>>>
>>>> for every line in that file, you
>>>> will need to
>>>> create a line in the new LUT,
>>>> something like
>>>>
>>>>
>>>> 8 Frontal_Mid_R 0 255 0 0
>>>>
>>>> This will make the right mid
>>>> frontal green =
>>>> (0,255,0)
>>>>
>>>>
>>>>
>>>>
>>>> On 7/30/13 9:55 AM, Mark Plantz wrote:
>>>> Hmm, so I received the text part
>>>> of the
>>>> LUT. Looks like this is completely
>>>> different from the segmented regions
>>>> that we would want. [attached]. Can't
>>>> seem to understand how this text file
>>>> could be related to the default
>>>> FreeSurfer LUT. It looks like the
>>>> labeling for an AAL map. This probably
>>>> wont' work will it?
>>>> - Mark
>>>>
>>>>
>>>> On Tue, Jul 30, 2013 at 8:47 AM, Bruce
>>>> Fischl
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>>>
>>>> wrote:
>>>> the UNC one? No, you should ask
>>>> them
>>>> On Tue, 30 Jul 2013, Mark Plantz
>>>> wrote:
>>>>
>>>>
>>>>
>>>> ---------- Forwarded message
>>>> ----------
>>>> From: Mark Plantz
>>>> <markplantz2016(a)u.**northwestern.edu<markplantz2016(a)u.northwestern.edu>
>>>> <mailto:markplantz2016@u.**northwestern.edu<markplantz2016(a)u.northwestern.edu>
>>>> >>
>>>>
>>>> Date: Tue, Jul 30, 2013 at
>>>> 8:39 AM
>>>> Subject: Re: [Freesurfer]
>>>> infant atlas segmentation
>>>> To: Bruce Fischl
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>>
>>>>
>>>> Just opened up the default
>>>> FreeSurferColorLUT.txt file.
>>>> So it looks like all
>>>> I have to change is the #No.
>>>> column of the file, to match
>>>> the ones in the
>>>> other LUT used.
>>>> I actually just received the
>>>> MRIcro .lut file from the
>>>> UNC group. [attached]
>>>>
>>>> Hopefully this will help
>>>> with the conversion.
>>>> However, I still have to
>>>> figure out how to open the
>>>> file. Any ideas?
>>>>
>>>>
>>>>
>>>>
>>>> On Tue, Jul 30, 2013 at 8:25
>>>> AM, Bruce Fischl
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>> wrote:
>>>> Hi Mark
>>>>
>>>> creating a FreeSurfer
>>>> LUT really isn't that hard.
>>>> Have you
>>>> looked at our standard
>>>> one? Probably we have the
>>>> names you
>>>> already want and you
>>>> just need to change our
>>>> indices to match
>>>> the ones in your
>>>> segmentation file (and save
>>>> it as a different
>>>> LUT)
>>>>
>>>> cheers
>>>> Bruce
>>>>
>>>> On Tue, 30 Jul 2013,
>>>> Mark Plantz wrote:
>>>>
>>>> Turns out that
>>>> the files had been labeled
>>>> using a
>>>> color LUT in a
>>>> program
>>>> called MRIcro. I
>>>> am now installing this
>>>> program
>>>> simply to access
>>>> the LUT.
>>>> Will it be as
>>>> simple as exchanging the
>>>> index values
>>>> from this LUT to
>>>> a
>>>> custom LUT in
>>>> FreeSurfer?
>>>>
>>>>
>>>> On Tue, Jul 30,
>>>> 2013 at 12:35 AM, Douglas
>>>> Greve
>>>>
>>>> <greve(a)nmr.mgh.harvard.edu
>>>> <mailto:greve@nmr.mgh.harvard.**edu<greve(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>> wrote:
>>>>
>>>> The
>>>> problem is that you need to
>>>> create a
>>>> completely new
>>>> LUT. The
>>>> labels
>>>> that get displayed with the
>>>> standard
>>>> LUT are going to
>>>> be
>>>> totally
>>>> random with respect to what
>>>> they
>>>> should display.
>>>>
>>>> On 7/29/13
>>>> 2:20 PM, Mark Plantz wrote:
>>>> Hi Doug,
>>>> Thanks for the
>>>> reply. I will definitely go
>>>> into
>>>> the LUT and
>>>> change those
>>>> values to some specific
>>>> region. My main
>>>> concern is
>>>> that I think all
>>>> of these "out of bounds"
>>>> labels are
>>>> the
>>>> symptoms of some
>>>> larger problem. The
>>>> segmentation
>>>> looks very
>>>> strange as
>>>> compared to a typical
>>>> segmentation (i.e.
>>>> an
>>>> 'aseg.mgz'
>>>> file). In fact, the
>>>> segmentation appears
>>>> to be
>>>> labeling
>>>> "left-<region" in the right
>>>> hemisphere.
>>>> Have you seen a
>>>> segmentation
>>>> file that looks like the
>>>> once I
>>>> attached before?
>>>> I
>>>> am used to
>>>> seeing segmentation files
>>>> such as the one
>>>> attached to
>>>> this e-mail.
>>>>
>>>> - Mark
>>>>
>>>>
>>>> On Mon, Jul 29,
>>>> 2013 at 12:28 PM, Douglas
>>>> Greve
>>>>
>>>> <greve(a)nmr.mgh.harvard.edu
>>>> <mailto:greve@nmr.mgh.harvard.**edu<greve(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>> wrote:
>>>>
>>>> Mark, the
>>>> only thing that is wrong
>>>> with the
>>>> out of
>>>> bounds
>>>> regions is that they are not
>>>> represented in
>>>> the LUT.
>>>> Once you add an index
>>>> corresponding
>>>> to the
>>>> index of
>>>> the segmentation to the LUT,
>>>> it will
>>>> not
>>>> show up as
>>>> "out of bounds". The brain
>>>> mask has
>>>> nothing to
>>>> do with it.
>>>> best
>>>> doug
>>>>
>>>>
>>>>
>>>> On 7/29/13
>>>> 12:50 PM, Mark Plantz wrote:
>>>> Sorry
>>>> about that. I received the
>>>> manual
>>>>
>>>> segmentations from
>>>> aUNCmedicalgroup<http://www.**
>>>> med.unc.edu/bric/ideagroup/**free-softwares/unc-in<http://www.med.unc.edu/bric/ideagroup/free-softwares/unc-in>
>>>> fan
>>>> t-0-1-2
>>>> -atla
>>>> ses>. I
>>>> actually asked the main
>>>> researcher
>>>> about the
>>>> out of bounds regions. He
>>>> thinks
>>>> that as
>>>> long as the segmented file
>>>> lines up
>>>> with the
>>>> input volumes, a few out of
>>>> bounds
>>>> regions
>>>> might be OK. However, these
>>>> seg
>>>> volumes
>>>> look very different from a
>>>> typical
>>>> .aseg
>>>> volume that I am used to
>>>> seeing after
>>>> recon-all
>>>> is run.
>>>> Maybe the
>>>> segmentation is simply
>>>> incompatible with
>>>> FreeSurfer?
>>>>
>>>> Thanks for the
>>>> help. These files are a
>>>> nightmare!
>>>>
>>>> - MP
>>>>
>>>>
>>>> On Mon, Jul 29,
>>>> 2013 at 11:40 AM, Bruce
>>>> Fischl
>>>>
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>> wrote:
>>>> can you cc
>>>> the list please? Maybe we
>>>> should
>>>> start over. Where did you
>>>> get the
>>>> manual
>>>> segmentations from?
>>>>
>>>> On Mon, 29
>>>> Jul 2013, Mark Plantz wrote:
>>>>
>>>> Ahh,
>>>> right. So it looks like
>>>> the
>>>> red regions appear to be
>>>>
>>>> averaged around 248. I am
>>>> not
>>>> sure why that is the
>>>> case
>>>> or if it has
>>>> any
>>>> significance. I attached
>>>> a
>>>> screen shot for
>>>>
>>>> reference.
>>>>
>>>>
>>>> On
>>>> Mon, Jul 29, 2013 at
>>>>
>>>> 11:29 AM, Bruce Fischl
>>>>
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>>
>>>> wrote:
>>>>
>>>> it isn't a
>>>>
>>>> registration file. You
>>>>
>>>> should just specify it as a
>>>>
>>>> volume on the freeview
>>>>
>>>> command line, the same as
>>>>
>>>> brainmask.mgz
>>>>
>>>>
>>>> On Mon, 29 Jul 2013,
>>>> Mark
>>>> Plantz wrote:
>>>>
>>>>
>>>> I actually tried
>>>> to
>>>> view the brainmask.mgz
>>>> file
>>>> with the segmentation
>>>> file
>>>> [Freeview calls it
>>>>
>>>> 'registration
>>>>
>>>> file' I believe].
>>>>
>>>> For some reason,
>>>> the
>>>> file will load without
>>>>
>>>> segmentation, but when I
>>>>
>>>> attempt to add the
>>>>
>>>> registration
>>>>
>>>> file, I get an
>>>>
>>>> error
>>>>
>>>> message:
>>>>
>>>> "Failed to load
>>>> MRI
>>>>
>>>> ~/.../../../brainmask.mgz
>>>>
>>>>
>>>> Could this
>>>>
>>>> potentially be part of the
>>>>
>>>> problem?
>>>>
>>>>
>>>> Thanks
>>>>
>>>>
>>>> MP
>>>>
>>>>
>>>>
>>>> On Mon, Jul 29,
>>>> 2013
>>>> at 10:57 AM, Mark
>>>>
>>>> Plantz
>>>>
>>>> <markplantz2016(a)u.**northwestern.edu<markplantz2016(a)u.northwestern.edu>
>>>> <mailto:markplantz2016@u.**northwestern.edu<markplantz2016(a)u.northwestern.edu>
>>>> >>
>>>>
>>>>
>>>> wrote:
>>>>
>>>>
>>>> It looks
>>>> like
>>>> the values vary from
>>>>
>>>> 20-120 depending on which
>>>>
>>>> region I run the cursor
>>>>
>>>> over.
>>>>
>>>> However, aren't
>>>>
>>>> those the
>>>>
>>>> values
>>>> that
>>>> correspond to the
>>>>
>>>> brain.mgz regions? Is there
>>>>
>>>> another way to find the
>>>>
>>>> segmentation
>>>>
>>>> values?
>>>>
>>>>
>>>>
>>>> On Mon, Jul 29,
>>>> 2013
>>>> at 10:37 AM, Bruce
>>>>
>>>> Fischl
>>>>
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>>
>>>> wrote:
>>>>
>>>> I mean the
>>>>
>>>> segmentation values that
>>>> give
>>>> you the "out of bounds"
>>>>
>>>> message
>>>>
>>>> On Mon, 29
>>>> Jul
>>>> 2013, Mark Plantz wrote:
>>>>
>>>>
>>>> Hi
>>>>
>>>> Bruce,
>>>>
>>>> Do
>>>> you
>>>> mean the brainmask.mgz
>>>>
>>>> values? I'm not sure what
>>>> the
>>>> segmentation #'s exactly
>>>> are.
>>>>
>>>>
>>>>
>>>>
>>>> Thanks!
>>>>
>>>>
>>>> MP
>>>>
>>>>
>>>>
>>>> On
>>>> Mon,
>>>> Jul 29, 2013 at 10:17
>>>> AM,
>>>> Bruce Fischl
>>>>
>>>> <fischl(a)nmr.mgh.harvard.edu
>>>> <mailto:fischl@nmr.mgh.**harvard.edu<fischl(a)nmr.mgh.harvard.edu>
>>>> >>
>>>>
>>>>
>>>> wrote:
>>>>
>>>>
>>>> Hi
>>>> Mark
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> what #s are those
>>>>
>>>> segmentations? It should be
>>>>
>>>> trivial to just add them to
>>>> the
>>>> end of
>>>>
>>>> the
>>>>
>>>> LUT.
>>>> I
>>>> wouldn't let them be
>>>>
>>>>
>>>>
>>>> out of bounds as there
>>>>
>>>> might be code around that
>>>>
>>>> might ignore them then.
>>>>
>>>>
>>>>
>>>>
>>>> cheers
>>>>
>>>>
>>>>
>>>> Bruce
>>>>
>>>>
>>>>
>>>> On
>>>> Mon, 29 Jul 2013, Mark
>>>>
>>>> Plantz wrote:
>>>>
>>>>
>>>>
>>>>
>>>> Hi Doug,
>>>>
>>>>
>>>>
>>>> Thanks for
>>>> the
>>>> reply. After doing some
>>>>
>>>> research, it looks like
>>>>
>>>> messing
>>>>
>>>> with the
>>>>
>>>> LUT
>>>>
>>>> might be a
>>>>
>>>>
>>>>
>>>> risky decision [and
>>>> way
>>>>
>>>>
>>>>
>>>> out of my
>>>>
>>>> abilities!].
>>>>
>>>>
>>>>
>>>>
>>>> If I were to use
>>>> this
>>>> segmentation file to
>>>>
>>>> create a .gca atlas using
>>>> the
>>>>
>>>> command
>>>>
>>>>
>>>>
>>>> mri_ca_train, do you
>>>>
>>>>
>>>>
>>>> think it would yield
>>>>
>>>>
>>>>
>>>> problems or b
>>>>
>>>> ...
>>
>> [Message clipped]
>>
>>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve(a)nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> FileDrop: https://gate.nmr.mgh.harvard.**edu/filedrop2<https://gate.nmr.mgh.harvard.edu/filedrop2>
> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> Outgoing: ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/**
> greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. If the e-mail was sent to you in error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
2
1
Dear Freesurfer experts,
I am currently trying to obtain mean thickness values for certain
sub-regions of the cortex. I have previously used this command
asegstats2table --subjects X_* --meas thickness --tablefile aseg_stats.txt
however now (Ive updated to v 5.3) I receive this error
asegstats2table: error: option --meas: invalid choice: 'thickness'
(choose from 'volume', 'Area_mm2', 'nvoxels', 'nvertices', 'mean',
'std', 'snr', 'max')
Has the thickness option been taken away? If this is the case, should
I use mris_anatomical stats for labels instead? Or is there still a
way to use asegstats2table for subregions (for example for anterior
cingulate? Eg in aseg_stats to table I can get the volumes but not
thickness values for caudal anterior cingulate?)
Thanks for your help!
Best Wishes,
Cathy
--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
2
1
As an update, I noticed that the bbregister output log had an interesting
warning statement:
WARNING:: Flipping Left/Right orientation (as det < 0)
tkregister_tcl /Applications/freesurfer/tktools/tkregister2.tcl
target volume
/Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/tmp.bbregister.4857/fslregister/movvol.fslregister.nii
movable volume
/Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/tmp.bbregister.4857/template.nii
reg file
/Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/tmp.bbregister.4857/fslregister/swapreg.dat
LoadVol 0
ZeroCRAS 0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target
/Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/tmp.bbregister.4857/fslregister/movvol.fslregister.nii
INFO: target does not conform to COR format, so I'm going to
reslice to COR. This will not affect the final registration.
Not sure if this is common. I'll e-mail back if I figure anything else out.
MP
On Tue, Aug 6, 2013 at 9:13 AM, Mark Plantz <
markplantz2016(a)u.northwestern.edu> wrote:
> I think that the registration turned out ok [well it isn't upside down]. I
> attached a few screenshots.
>
> My bbregister command is:
>
> *bbregister --s CMH-8169 --mov
> /Volumes/Wong_Lab/CochlearImplant/UNC_NiFTI/infant-1yr-mgz/seg.mgz
> --init-fsl --reg
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> --t1 --o
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/output.mgz*
> *
> *
> Subsequently, my mri_label2vol command is:
>
> *ingvalsons-imac:~ IngvalsonLab$ mri_label2vol --seg
> /Volumes/Wong_Lab/CochlearImplant/UNC_NiFTI/infant-1yr-mgz/seg.mgz --temp
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/output.mgz
> --reg
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> --o /Users/IngvalsonLab/Desktop/output.mgz *
>
> Number of labels: 0
> Annot File: (null)
> Template Volume:
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/output.mgz
> Outut Volume: /Users/IngvalsonLab/Desktop/output.mgz
> Registration File:
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> Fill Threshold: 0
> Label Vox Vol: 1
> ProjType: (null)
> ProjTypeId: 0
> ProjStart: 0
> ProjStop: 0
> ProjDelta: 0.1
> Subject: (null)
> Hemi: (null)
> UseNewASeg2Vol: 1
> DoLabelStatVol 0
> LabelCodeOffset 0
> setenv SUBJECTS_DIR /Applications/freesurfer/subjects
> $Id: mri_label2vol.c,v 1.34.2.5 2012/06/08 17:31:03 greve Exp $
> Template RAS-to-Vox: --------
> -1.000 0.000 0.000 128.000;
> -0.000 -0.000 -1.000 128.000;
> -0.000 1.000 -0.000 128.000;
> 0.000 0.000 0.000 1.000;
> Template Voxel Volume: 1
> nHits Thresh: 0
> Loading registration from
> /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-8169/bbregister/register.dat
> RegMat: --------
> -0.994 -0.098 0.042 0.715;
> 0.043 -0.001 0.999 -14.682;
> 0.097 -0.995 -0.005 2.026;
> 0.000 0.000 0.000 1.000;
> Label RAS-to-Vox: --------
> 0.994 0.098 -0.042 127.285;
> -0.097 0.995 0.005 125.974;
> 0.043 -0.001 0.999 113.318;
> 0.000 0.000 0.000 1.000;
> ASeg2Vol: Building LUT
> ASeg2Vol: Sorting
> ASeg2Vol: Mapping
> ASeg2Vol: Reverse Map
> nmisses = 9739499 (73560 filled)
> ASeg2Vol: done
> ingvalsons-imac:~ IngvalsonLab$
>
>
> Is it significant that number of labels = 0? Or is that because I am using
> a segmentation volume instead of an actual .label file?
>
> Other than that, I cannot seem to determine why the output images would be
> inverted by 180 degrees.
>
> Thank you in advance
> MP
>
>
>
>
> On Mon, Aug 5, 2013 at 4:26 PM, Douglas Greve <greve(a)nmr.mgh.harvard.edu>wrote:
>
>>
>> did you look at the registration with tkregister2? When bbregister
>> finished, it would have printed out the command line to run (it is also at
>> the end of the log file). If that looks ok, please send your bbregister
>> command.
>> doug
>>
>>
>> On 8/5/13 1:47 PM, Mark Plantz wrote:
>>
>> Thanks Doug. mri_label2vol worked well, except it looks like all of the
>> files are inverted by 90 degrees. They appear inverted in both tkmedit and
>> 'FreeView.' I read that inversions are common in "fslview" but not in
>> tkmedit. Any idea what could be causing this problem?
>>
>> My command line is:
>>
>> *mri_label2vol --seg
>> /Volumes/Wong_Lab/CochlearImplant/UNC_NiFTI/infant-1yr-mgz/seg.mgz --temp
>> /Users/IngvalsonLab/Desktop/temp.mgz --o seg_new.mgz --reg register.dat*
>> *
>> *
>> I didn't encounter any errors with mri_label2vol nor bbregister [which
>> was used to generate register.dat and temp.mgz].
>>
>> Any ideas what could be causing this problem?
>>
>> I can attach more images if this one doesn't portray the inversion well.
>>
>> Thanks a lot
>>
>> MP
>>
>>
>> On Mon, Aug 5, 2013 at 10:12 AM, Douglas Greve <greve(a)nmr.mgh.harvard.edu
>> > wrote:
>>
>>>
>>> The file that you pass it with the --reg option is the registration file
>>> (eg, --reg register.dat). This can be used for input to mri_vol2vol or
>>> mri_label2vol. mri_label2vol is appropriate for a segmetation
>>>
>>> doug
>>>
>>>
>>>
>>> On 8/5/13 10:22 AM, Mark Plantz wrote:
>>>
>>> Thank you. Do you know how to access the transform that is outputted by
>>> bbregister. I am just obtaining an output volume <volume.mgz>>?
>>>
>>>
>>> On Thu, Aug 1, 2013 at 3:56 PM, Bruce Fischl <
>>> fischl(a)nmr.mgh.harvard.edu> wrote:
>>>
>>>> Hi Mark
>>>>
>>>> you can use the transform that bbregister outputs and give it to
>>>> mri_convert with -at <transform name>
>>>>
>>>> cheers
>>>>
>>>> Bruce
>>>>
>>>>
>>>> On Thu, 1 Aug 2013, Mark Plantz wrote:
>>>>
>>>> One last question: Is there any flag I can use with 'bbregister' that
>>>>> prevents the labels from changing in my segmentation volume? This is
>>>>> occuring because the volume that I am moving has labels. For some
>>>>> reason,
>>>>> the labels change ever so slightly in the output file.
>>>>>
>>>>>
>>>>> On Thu, Aug 1, 2013 at 2:28 PM, Bruce Fischl <
>>>>> fischl(a)nmr.mgh.harvard.edu>
>>>>> wrote:
>>>>> glad it worked out
>>>>> Bruce
>>>>> On Thu, 1 Aug 2013, Mark Plantz wrote:
>>>>>
>>>>> Just as an update, it turns out that my segmentation
>>>>> volume had been
>>>>> slightly altered during the conversion from .nii to
>>>>> .mgz. I completely
>>>>> forgot to use the -rt nearest flag to prevent the
>>>>> labels from becoming
>>>>> distorted. That is why the segmentation looked so
>>>>> fuzzy with various regions
>>>>> labeled incorrectly.
>>>>> Apparently, I should check the basics before
>>>>> overcomplicating the problem,
>>>>> haha. Thanks for the help everyone!
>>>>>
>>>>>
>>>>> On Thu, Aug 1, 2013 at 9:36 AM, Mark Plantz
>>>>> <markplantz2016(a)u.northwestern.edu> wrote:
>>>>> Sounds good. I also just realized that the
>>>>> segmentation values
>>>>> are varying from 0-255, which makes me think
>>>>> that the file is
>>>>> only designed for the grayscale/heat/etc.
>>>>> settings [where 0 is
>>>>> darkest regions and 255 is brightest regions].
>>>>> Is that a valid
>>>>> assumption? Also, if this is the case, would
>>>>> it be impossible to
>>>>> create a .gca file using mri_ca_train with
>>>>> these files?
>>>>> Thanks for the help.
>>>>>
>>>>> MP
>>>>>
>>>>>
>>>>> On Wed, Jul 31, 2013 at 8:43 PM, Douglas Greve
>>>>> <greve(a)nmr.mgh.harvard.edu> wrote:
>>>>>
>>>>> Just make sure that you create a new file and
>>>>> do not
>>>>> repeat index numbers.
>>>>>
>>>>>
>>>>> On 7/31/13 2:02 PM, Mark Plantz wrote:
>>>>> That makes sense. Wouldn't that cause there to
>>>>> be
>>>>> some overlap between different regions, since
>>>>> the
>>>>> same index #'s used by the two programs
>>>>> (FreeSurfer
>>>>> & MRIcro) correspond to different brain
>>>>> regions?
>>>>>
>>>>>
>>>>> On Tue, Jul 30, 2013 at 12:50 PM, Douglas Greve
>>>>> <greve(a)nmr.mgh.harvard.edu> wrote:
>>>>>
>>>>> for every line in that file, you will need to
>>>>> create a line in the new LUT, something like
>>>>>
>>>>>
>>>>> 8 Frontal_Mid_R 0 255 0 0
>>>>>
>>>>> This will make the right mid frontal green =
>>>>> (0,255,0)
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 7/30/13 9:55 AM, Mark Plantz wrote:
>>>>> Hmm, so I received the text part of the
>>>>> LUT. Looks like this is completely
>>>>> different from the segmented regions
>>>>> that we would want. [attached]. Can't
>>>>> seem to understand how this text file
>>>>> could be related to the default
>>>>> FreeSurfer LUT. It looks like the
>>>>> labeling for an AAL map. This probably
>>>>> wont' work will it?
>>>>> - Mark
>>>>>
>>>>>
>>>>> On Tue, Jul 30, 2013 at 8:47 AM, Bruce Fischl
>>>>> <fischl(a)nmr.mgh.harvard.edu> wrote:
>>>>> the UNC one? No, you should ask
>>>>> them
>>>>> On Tue, 30 Jul 2013, Mark Plantz
>>>>> wrote:
>>>>>
>>>>>
>>>>>
>>>>> ---------- Forwarded message
>>>>> ----------
>>>>> From: Mark Plantz
>>>>> <markplantz2016(a)u.northwestern.edu>
>>>>> Date: Tue, Jul 30, 2013 at
>>>>> 8:39 AM
>>>>> Subject: Re: [Freesurfer]
>>>>> infant atlas segmentation
>>>>> To: Bruce Fischl
>>>>> <fischl(a)nmr.mgh.harvard.edu>
>>>>>
>>>>>
>>>>> Just opened up the default
>>>>> FreeSurferColorLUT.txt file.
>>>>> So it looks like all
>>>>> I have to change is the #No.
>>>>> column of the file, to match
>>>>> the ones in the
>>>>> other LUT used.
>>>>> I actually just received the
>>>>> MRIcro .lut file from the
>>>>> UNC group. [attached]
>>>>>
>>>>> Hopefully this will help
>>>>> with the conversion.
>>>>> However, I still have to
>>>>> figure out how to open the
>>>>> file. Any ideas?
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Tue, Jul 30, 2013 at 8:25
>>>>> AM, Bruce Fischl
>>>>> <fischl(a)nmr.mgh.harvard.edu>
>>>>> wrote:
>>>>> Hi Mark
>>>>>
>>>>> creating a FreeSurfer
>>>>> LUT really isn't that hard.
>>>>> Have you
>>>>> looked at our standard
>>>>> one? Probably we have the
>>>>> names you
>>>>> already want and you
>>>>> just need to change our
>>>>> indices to match
>>>>> the ones in your
>>>>> segmentation file (and save
>>>>> it as a different
>>>>> LUT)
>>>>>
>>>>> cheers
>>>>> Bruce
>>>>>
>>>>> On Tue, 30 Jul 2013,
>>>>> Mark Plantz wrote:
>>>>>
>>>>> Turns out that
>>>>> the files had been labeled
>>>>> using a
>>>>> color LUT in a
>>>>> program
>>>>> called MRIcro. I
>>>>> am now installing this
>>>>> program
>>>>> simply to access
>>>>> the LUT.
>>>>> Will it be as
>>>>> simple as exchanging the
>>>>> index values
>>>>> from this LUT to
>>>>> a
>>>>> custom LUT in
>>>>> FreeSurfer?
>>>>>
>>>>>
>>>>> On Tue, Jul 30,
>>>>> 2013 at 12:35 AM, Douglas
>>>>> Greve
>>>>>
>>>>> <greve(a)nmr.mgh.harvard.edu>
>>>>> wrote:
>>>>>
>>>>> The
>>>>> problem is that you need to
>>>>> create a
>>>>> completely new
>>>>> LUT. The
>>>>> labels
>>>>> that get displayed with the
>>>>> standard
>>>>> LUT are going to
>>>>> be
>>>>> totally
>>>>> random with respect to what
>>>>> they
>>>>> should display.
>>>>>
>>>>> On 7/29/13
>>>>> 2:20 PM, Mark Plantz wrote:
>>>>> Hi Doug,
>>>>> Thanks for the
>>>>> reply. I will definitely go
>>>>> into
>>>>> the LUT and
>>>>> change those
>>>>> values to some specific
>>>>> region. My main
>>>>> concern is
>>>>> that I think all
>>>>> of these "out of bounds"
>>>>> labels are
>>>>> the
>>>>> symptoms of some
>>>>> larger problem. The
>>>>> segmentation
>>>>> looks very
>>>>> strange as
>>>>> compared to a typical
>>>>> segmentation (i.e.
>>>>> an
>>>>> 'aseg.mgz'
>>>>> file). In fact, the
>>>>> segmentation appears
>>>>> to be
>>>>> labeling
>>>>> "left-<region" in the right
>>>>> hemisphere.
>>>>> Have you seen a
>>>>> segmentation
>>>>> file that looks like the
>>>>> once I
>>>>> attached before?
>>>>> I
>>>>> am used to
>>>>> seeing segmentation files
>>>>> such as the one
>>>>> attached to
>>>>> this e-mail.
>>>>>
>>>>> - Mark
>>>>>
>>>>>
>>>>> On Mon, Jul 29,
>>>>> 2013 at 12:28 PM, Douglas
>>>>> Greve
>>>>>
>>>>> <greve(a)nmr.mgh.harvard.edu>
>>>>> wrote:
>>>>>
>>>>> Mark, the
>>>>> only thing that is wrong
>>>>> with the
>>>>> out of
>>>>> bounds
>>>>> regions is that they are not
>>>>> represented in
>>>>> the LUT.
>>>>> Once you add an index
>>>>> corresponding
>>>>> to the
>>>>> index of
>>>>> the segmentation to the LUT,
>>>>> it will
>>>>> not
>>>>> show up as
>>>>> "out of bounds". The brain
>>>>> mask has
>>>>> nothing to
>>>>> do with it.
>>>>> best
>>>>> doug
>>>>>
>>>>>
>>>>>
>>>>> On 7/29/13
>>>>> 12:50 PM, Mark Plantz wrote:
>>>>> Sorry
>>>>> about that. I received the
>>>>> manual
>>>>>
>>>>> segmentations from aUNCmedicalgroup<
>>>>> http://www.med.unc.edu/bric/ideagroup/free-softwares/unc-in
>>>>> fan
>>>>> t-0-1-2
>>>>> -atla
>>>>> ses>. I
>>>>> actually asked the main
>>>>> researcher
>>>>> about the
>>>>> out of bounds regions. He
>>>>> thinks
>>>>> that as
>>>>> long as the segmented file
>>>>> lines up
>>>>> with the
>>>>> input volumes, a few out of
>>>>> bounds
>>>>> regions
>>>>> might be OK. However, these
>>>>> seg
>>>>> volumes
>>>>> look very different from a
>>>>> typical
>>>>> .aseg
>>>>> volume that I am used to
>>>>> seeing after
>>>>> recon-all
>>>>> is run.
>>>>> Maybe the
>>>>> segmentation is simply
>>>>> incompatible with
>>>>> FreeSurfer?
>>>>>
>>>>> Thanks for the
>>>>> help. These files are a
>>>>> nightmare!
>>>>>
>>>>> - MP
>>>>>
>>>>>
>>>>> On Mon, Jul 29,
>>>>> 2013 at 11:40 AM, Bruce
>>>>> Fischl
>>>>>
>>>>> <fischl(a)nmr.mgh.harvard.edu>
>>>>> wrote:
>>>>> can you cc
>>>>> the list please? Maybe we
>>>>> should
>>>>> start over. Where did you
>>>>> get the
>>>>> manual
>>>>> segmentations from?
>>>>>
>>>>> On Mon, 29
>>>>> Jul 2013, Mark Plantz wrote:
>>>>>
>>>>> Ahh,
>>>>> right. So it looks like
>>>>> the
>>>>> red regions appear to be
>>>>>
>>>>> averaged around 248. I am
>>>>> not
>>>>> sure why that is the
>>>>> case
>>>>> or if it has
>>>>> any
>>>>> significance. I attached
>>>>> a
>>>>> screen shot for
>>>>>
>>>>> reference.
>>>>>
>>>>>
>>>>> On
>>>>> Mon, Jul 29, 2013 at
>>>>>
>>>>> 11:29 AM, Bruce Fischl
>>>>>
>>>>> <fischl(a)nmr.mgh.harvard.edu>
>>>>>
>>>>> wrote:
>>>>>
>>>>> it isn't a
>>>>>
>>>>> registration file. You
>>>>>
>>>>> should just specify it as a
>>>>>
>>>>> volume on the freeview
>>>>>
>>>>> command line, the same as
>>>>>
>>>>> brainmask.mgz
>>>>>
>>>>>
>>>>> On Mon, 29 Jul 2013,
>>>>> Mark
>>>>> Plantz wrote:
>>>>>
>>>>>
>>>>> I actually tried
>>>>> to
>>>>> view the brainmask.mgz
>>>>> file
>>>>> with the segmentation
>>>>> file
>>>>> [Freeview calls it
>>>>>
>>>>> 'registration
>>>>>
>>>>> file' I believe].
>>>>>
>>>>> For some reason,
>>>>> the
>>>>> file will load without
>>>>>
>>>>> segmentation, but when I
>>>>>
>>>>> attempt to add the
>>>>>
>>>>> registration
>>>>>
>>>>> file, I get an
>>>>>
>>>>> error
>>>>>
>>>>> message:
>>>>>
>>>>> "Failed to load
>>>>> MRI
>>>>>
>>>>> ~/.../../../brainmask.mgz
>>>>>
>>>>>
>>>>> Could this
>>>>>
>>>>> potentially be part of the
>>>>>
>>>>> problem?
>>>>>
>>>>>
>>>>> Thanks
>>>>>
>>>>>
>>>>> MP
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Jul 29,
>>>>> 2013
>>>>> at 10:57 AM, Mark
>>>>>
>>>>> Plantz
>>>>>
>>>>> <markplantz2016(a)u.northwestern.edu>
>>>>>
>>>>> wrote:
>>>>>
>>>>>
>>>>> It looks
>>>>> like
>>>>> the values vary from
>>>>>
>>>>> 20-120 depending on which
>>>>>
>>>>> region I run the cursor
>>>>>
>>>>> over.
>>>>>
>>>>> However, aren't
>>>>>
>>>>> those the
>>>>>
>>>>> values
>>>>> that
>>>>> correspond to the
>>>>>
>>>>> brain.mgz regions? Is there
>>>>>
>>>>> another way to find the
>>>>>
>>>>> segmentation
>>>>>
>>>>> values?
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Jul 29,
>>>>> 2013
>>>>> at 10:37 AM, Bruce
>>>>>
>>>>> Fischl
>>>>>
>>>>> <fischl(a)nmr.mgh.harvard.edu>
>>>>>
>>>>> wrote:
>>>>>
>>>>> I mean the
>>>>>
>>>>> segmentation values that
>>>>> give
>>>>> you the "out of bounds"
>>>>>
>>>>> message
>>>>>
>>>>> On Mon, 29
>>>>> Jul
>>>>> 2013, Mark Plantz wrote:
>>>>>
>>>>>
>>>>> Hi
>>>>>
>>>>> Bruce,
>>>>>
>>>>> Do
>>>>> you
>>>>> mean the brainmask.mgz
>>>>>
>>>>> values? I'm not sure what
>>>>> the
>>>>> segmentation #'s exactly
>>>>> are.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Thanks!
>>>>>
>>>>>
>>>>> MP
>>>>>
>>>>>
>>>>>
>>>>> On
>>>>> Mon,
>>>>> Jul 29, 2013 at 10:17
>>>>> AM,
>>>>> Bruce Fischl
>>>>>
>>>>> <fischl(a)nmr.mgh.harvard.edu>
>>>>>
>>>>> wrote:
>>>>>
>>>>>
>>>>> Hi
>>>>> Mark
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> what #s are those
>>>>>
>>>>> segmentations? It should be
>>>>>
>>>>> trivial to just add them to
>>>>> the
>>>>> end of
>>>>>
>>>>> the
>>>>>
>>>>> LUT.
>>>>> I
>>>>> wouldn't let them be
>>>>>
>>>>>
>>>>>
>>>>> out of bounds as there
>>>>>
>>>>> might be code around that
>>>>>
>>>>> might ignore them then.
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> cheers
>>>>>
>>>>>
>>>>>
>>>>> Bruce
>>>>>
>>>>>
>>>>>
>>>>> On
>>>>> Mon, 29 Jul 2013, Mark
>>>>>
>>>>> Plantz wrote:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Hi Doug,
>>>>>
>>>>>
>>>>>
>>>>> Thanks for
>>>>> the
>>>>> reply. After doing some
>>>>>
>>>>> research, it looks like
>>>>>
>>>>> messing
>>>>>
>>>>> with the
>>>>>
>>>>> LUT
>>>>>
>>>>> might be a
>>>>>
>>>>>
>>>>>
>>>>> risky decision [and
>>>>> way
>>>>>
>>>>>
>>>>>
>>>>> out of my
>>>>>
>>>>> abilities!].
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> If I were to use
>>>>> this
>>>>> segmentation file to
>>>>>
>>>>> create a .gca atlas using
>>>>> the
>>>>>
>>>>> command
>>>>>
>>>>>
>>>>>
>>>>> mri_ca_train, do you
>>>>>
>>>>>
>>>>>
>>>>> think it would yield
>>>>>
>>>>>
>>>>>
>>>>> problems or b
>>>>
>>>> ...
>>
>> [Message clipped]
>
>
>
2
1
Dear freesurfer experts,
I am currently do group analysis in qdec, and I canot select jacobian white
from the drop down menu, I thought this would be an option? Do I do have
additional steps to get these values?
Kind Regards,
Linn
3
3
Hi All:
When I ran trac-preproc I got an error that read s as follows:
trac-preproc exited with ERRORS at Mon Aug 5 13:12:53 EDT 2013. I do have
a bvec.txt and bval file in each directory.
thanks for your help,
Alan
The following are the messages:
csh::alanf@cerebro[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data]
:
trac-all -prep -c
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/dmrirc
INFO: SUBJECTS_DIR is
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons
INFO: Diffusion root is
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/
Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable5_3_0
trac-preproc -c
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/scripts/dmrirc.local
-log
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/scripts/trac-all.log
-cmd
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/scripts/trac-all.cmd
#-------------------------------------
/usr/local/freesurfer/stable5_3_0//bin/trac-preproc
#-------------------------------------
#@# Image corrections Mon Aug 5 13:12:10 EDT 2013
mri_convert
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/Diffusion_Recons/20080424_182054563000-000012-000001DTIValeras012a001.nii
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/dmri/dwi_orig.nii.gz
mri_convert
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/Diffusion_Recons/20080424_182054563000-000012-000001DTIValeras012a001.nii
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/dmri/dwi_orig.nii.gz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/Diffusion_Recons/20080424_182054563000-000012-000001DTIValeras012a001.nii...
TR=7570.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.989696, 0.0161603, 0.142271)
j_ras = (0.0163, 0.999867, -0.000183368)
k_ras = (0.142255, -0.00213754, 0.989828)
writing to
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/dmri/dwi_orig.nii.gz...
cp
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/bvecs.txt
/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons//BW_101/dmri/dwi_orig.mghdti.bvecs
cp: cannot stat
`/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusion_recons/bvecs.txt':
No such file or directory
Linux cerebro 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013
x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Mon Aug 5 13:12:53 EDT 2013
2
6
Try changing the format of the numbers:
0
1000
1000
etc, etc.
On Tue, 6 Aug 2013, Soto, David wrote:
> this is (note the file is named bvals_t (with a single column
> 0.000000000000000000e+00
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> 1.000000000000000000e+03
> http://www1.imperial.ac.uk/medicine/people/d.soto/
>
> ________________________________________
> From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
> Sent: 06 August 2013 16:44
> To: Soto, David
> Cc: freesurfer(a)nmr.mgh.harvard.edu
> Subject: RE: [Freesurfer] trac-all inquiry
>
> It looks like the error has to do with finding the b=0 frames in the DWI
> series. Can you attach you b-value table?
>
> On Tue, 6 Aug 2013, Soto, David wrote:
>
>> apologies, the trac-all.log sent was for a prior attempt
>> I did with a nii version of the diffusion data which did not work either
>> I converted then to mnc, and the log is this
>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>> Subject 02ST
>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>> FREESURFER_HOME /usr/local/freesurfer
>> Actual FREESURFER_HOME /usr/local/freesurfer
>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>> dsoto
>> wmen-dsoto3
>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>> cputime unlimited
>> filesize unlimited
>> datasize unlimited
>> stacksize 8192 kbytes
>> coredumpsize 0 kbytes
>> memoryuse unlimited
>> vmemoryuse unlimited
>> descriptors 1024
>> memorylocked 64 kbytes
>> maxproc 514727
>> maxlocks unlimited
>> maxsignal 514727
>> maxmessage 819200
>> maxnice 0
>> maxrtprio 0
>> maxrttime unlimited
>>
>> total used free shared buffers cached
>> Mem: 65903240 7003456 58899784 0 391760 5063564
>> -/+ buffers/cache: 1548132 64355108
>> Swap: 67032060 1791716 65240344
>>
>> ########################################
>> Program versions:
>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>> mri_convert --all-info
>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>> FLIRT version 6.0
>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>
>>
>> New invocation of trac-preproc
>>
>>
>> dsoto
>> wmen-dsoto3
>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>> cputime unlimited
>> filesize unlimited
>> datasize unlimited
>> stacksize 8192 kbytes
>> coredumpsize 0 kbytes
>> memoryuse unlimited
>> vmemoryuse unlimited
>> descriptors 1024
>> memorylocked 64 kbytes
>> maxproc 514727
>> maxlocks unlimited
>> maxsignal 514727
>> maxmessage 819200
>> maxnice 0
>> maxrtprio 0
>> maxrttime unlimited
>>
>> total used free shared buffers cached
>> Mem: 65903240 7004712 58898528 0 391760 5063564
>> -/+ buffers/cache: 1549388 64353852
>> Swap: 67032060 1791716 65240344
>>
>> #-------------------------------------
>> /usr/local/freesurfer/bin/trac-preproc
>> #-------------------------------------
>> #@# Image corrections Tue Aug 6 16:28:18 BST 2013
>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>> i_ras = (-1, 0, 0)
>> j_ras = (0, 0, 1)
>> k_ras = (-0, -1, -0)
>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>> INFO: input image orientation is LSP
>> INFO: input image determinant is -12.5224
>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>
>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>> fslroi <input> <output> <tmin> <tsize>
>>
>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>
>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>
>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>> #-------------------------------------
>> #@# Intra-subject registration Tue Aug 6 16:30:24 BST 2013
>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>> i_ras = (-1, 0, 0)
>> j_ras = (0, 0, -1)
>> k_ras = (0, 1, 0)
>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>> INFO: input image orientation is LIA
>> INFO: input image determinant is -1
>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>> LoadVol 0
>> ZeroCRAS 0
>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>> Diagnostic Level -1
>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>> INFO: target does not conform to COR format, so I'm going to
>> reslice to COR. This will not affect the final registration.
>> Ttarg: --------------------
>> -1.000 0.000 0.000 128.000;
>> 0.000 0.000 1.000 -128.000;
>> 0.000 -1.000 0.000 128.000;
>> 0.000 0.000 0.000 1.000;
>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>> Tmov: --------------------
>> -1.000 0.000 0.000 128.000;
>> 0.000 0.000 1.000 -128.000;
>> 0.000 -1.000 0.000 128.000;
>> 0.000 0.000 0.000 1.000;
>> mkheaderreg = 1, float2int = 0
>> Computing reg from header (and possibly input matrix)
>> ---- Input registration matrix (computed) --------
>> 1.000 0.000 0.000 0.000;
>> 0.000 1.000 0.000 0.000;
>> 0.000 0.000 1.000 1.000;
>> 0.000 0.000 0.000 1.000;
>> ---------------------------------------
>> ---- Input registration matrix --------
>> 1.000 0.000 0.000 0.000;
>> 0.000 1.000 0.000 0.000;
>> 0.000 0.000 1.000 1.000;
>> 0.000 0.000 0.000 1.000;
>> Determinant 1
>> subject = subject-unknown
>> RegMat ---------------------------
>> 1.000 0.000 0.000 0.000;
>> 0.000 0.000 -1.000 0.000;
>> 0.000 1.000 0.000 1.000;
>> 0.000 0.000 0.000 1.000;
>> FSLOUTPUTTYPE NIFTI_GZ
>> tkreg2FSL: mov det = -1, ref det = -1
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>> Cannot read input-matrix
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>> Cannot read concat-matrix
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>> Cannot read input-matrix
>> #-------------------------------------
>> http://www1.imperial.ac.uk/medicine/people/d.soto/
>>
>> ________________________________________
>> From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
>> Sent: 06 August 2013 16:17
>> To: Soto, David
>> Cc: freesurfer(a)nmr.mgh.harvard.edu
>> Subject: RE: [Freesurfer] trac-all inquiry
>>
>> The first error is:
>> niiRead(): error opening file
>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>
>> Does this file exist?
>>
>> On Tue, 6 Aug 2013, Soto, David wrote:
>>
>>> here it is - thanks!
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log
>>> Tue Aug 6 01:57:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5980064 59923176 0 83692 4482000
>>> -/+ buffers/cache: 1414372 64488868
>>> Swap: 67032060 1824148 65207912
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5980856 59922384 0 83692 4482000
>>> -/+ buffers/cache: 1415164 64488076
>>> Swap: 67032060 1824148 65207912
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 01:57:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:00:22 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5982784 59920456 0 83932 4482156
>>> -/+ buffers/cache: 1416696 64486544
>>> Swap: 67032060 1824120 65207940
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984932 59918308 0 83932 4482156
>>> -/+ buffers/cache: 1418844 64484396
>>> Swap: 67032060 1824120 65207940
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:00:32 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5983252 59919988 0 83956 4482156
>>> -/+ buffers/cache: 1417140 64486100
>>> Swap: 67032060 1824120 65207940
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984752 59918488 0 83956 4482156
>>> -/+ buffers/cache: 1418640 64484600
>>> Swap: 67032060 1824120 65207940
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:00:33 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:01:42 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984044 59919196 0 84144 4482192
>>> -/+ buffers/cache: 1417708 64485532
>>> Swap: 67032060 1824104 65207956
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5987064 59916176 0 84144 4482192
>>> -/+ buffers/cache: 1420728 64482512
>>> Swap: 67032060 1824104 65207956
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:01:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5985300 59917940 0 84160 4482188
>>> -/+ buffers/cache: 1418952 64484288
>>> Swap: 67032060 1824104 65207956
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5986324 59916916 0 84160 4482188
>>> -/+ buffers/cache: 1419976 64483264
>>> Swap: 67032060 1824104 65207956
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:01:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:02:48 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984700 59918540 0 84336 4482212
>>> -/+ buffers/cache: 1418152 64485088
>>> Swap: 67032060 1824076 65207984
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5987120 59916120 0 84336 4482216
>>> -/+ buffers/cache: 1420568 64482672
>>> Swap: 67032060 1824076 65207984
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:02:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5986420 59916820 0 84348 4482212
>>> -/+ buffers/cache: 1419860 64483380
>>> Swap: 67032060 1824076 65207984
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5988520 59914720 0 84348 4482212
>>> -/+ buffers/cache: 1421960 64481280
>>> Swap: 67032060 1824076 65207984
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:02:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
>>> #-------------------------------------
>>> #@# Masks Tue Aug 6 02:04:33 BST 2013
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> Binarizing based on matching values
>>> nMatch 5
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> binval 1
>>> binvalnot 0
>>> Found 467858 values in range
>>> Counting number of voxels
>>> Found 467858 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> Binarizing based on matching values
>>> nMatch 8
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> 5 28
>>> 6 60
>>> 7 16
>>> binval 1
>>> binvalnot 0
>>> Found 494467 values in range
>>> Counting number of voxels
>>> Found 494467 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> Binarizing based on matching values
>>> nMatch 2
>>> 0 4
>>> 1 43
>>> binval 0
>>> binvalnot 1
>>> Found 7382 values in range
>>> Counting number of voxels
>>> Found 7382 voxels in final mask
>>> mri_binarize done
>>> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> subject 02ST
>>> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> useribbon 0
>>> baseoffset 0
>>> labeling wm
>>> labeling hypo-intensities as wm
>>> dmaxctx 2.000000
>>> RipUnknown 0
>>>
>>> Reading lh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>>>
>>> Reading lh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>>>
>>> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>>
>>> Reading rh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>>>
>>> Reading rh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>>>
>>> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>> Have color table for lh white annotation
>>> Have color table for rh white annotation
>>> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
>>> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>>>
>>> Building hash of lh white
>>>
>>> Building hash of lh pial
>>>
>>> Building hash of rh white
>>>
>>> Building hash of rh pial
>>>
>>> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
>>> ASeg Vox2RAS: -----------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> -------------------------
>>>
>>> Labeling Slice
>>> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
>>> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
>>> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
>>> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
>>> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
>>> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
>>> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
>>> 140 141 142
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:09:35 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5990572 59912668 0 85028 4482988
>>> -/+ buffers/cache: 1422556 64480684
>>> Swap: 67032060 1824048 65208012
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5992728 59910512 0 85028 4482988
>>> -/+ buffers/cache: 1424712 64478528
>>> Swap: 67032060 1824048 65208012
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:11:25 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5989716 59913524 0 85072 4482980
>>> -/+ buffers/cache: 1421664 64481576
>>> Swap: 67032060 1824048 65208012
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5991732 59911508 0 85072 4482980
>>> -/+ buffers/cache: 1423680 64479560
>>> Swap: 67032060 1824048 65208012
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:11:26 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, 1)
>>> k_ras = (-0, -1, -0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> INFO: input image orientation is LSP
>>> INFO: input image determinant is -12.5224
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
>>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
>>> #-------------------------------------
>>> #@# Masks Tue Aug 6 02:15:07 BST 2013
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> Binarizing based on matching values
>>> nMatch 5
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> binval 1
>>> binvalnot 0
>>> Found 467858 values in range
>>> Counting number of voxels
>>> Found 467858 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> Binarizing based on matching values
>>> nMatch 8
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> 5 28
>>> 6 60
>>> 7 16
>>> binval 1
>>> binvalnot 0
>>> Found 494467 values in range
>>> Counting number of voxels
>>> Found 494467 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> Binarizing based on matching values
>>> nMatch 2
>>> 0 4
>>> 1 43
>>> binval 0
>>> binvalnot 1
>>> Found 7382 values in range
>>> Counting number of voxels
>>> Found 7382 voxels in final mask
>>> mri_binarize done
>>> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> subject 02ST
>>> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> useribbon 0
>>> baseoffset 0
>>> labeling wm
>>> labeling hypo-intensities as wm
>>> dmaxctx 2.000000
>>> RipUnknown 0
>>>
>>> Reading lh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>>>
>>> Reading lh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>>>
>>> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>>
>>> Reading rh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>>>
>>> Reading rh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>>>
>>> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>> Have color table for lh white annotation
>>> Have color table for rh white annotation
>>> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
>>> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>>>
>>> Building hash of lh white
>>>
>>> Building hash of lh pial
>>>
>>> Building hash of rh white
>>>
>>> Building hash of rh pial
>>>
>>> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
>>> ASeg Vox2RAS: -----------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> -------------------------
>>>
>>> Labeling Slice
>>> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
>>> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
>>> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
>>> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
>>> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
>>> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
>>> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
>>> 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
>>> 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
>>> 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
>>> 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
>>> 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
>>> 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358
>>> Used brute-force search on 0 voxels
>>> Fixing Parahip LH WM
>>> Found 6 clusters
>>> 0 k 4.000000
>>> 1 k 1038.000000
>>> 2 k 3.000000
>>> 3 k 1.000000
>>> 4 k 2.000000
>>> 5 k 1.000000
>>> Fixing Parahip RH WM
>>> Found 5 clusters
>>> 0 k 1.000000
>>> 1 k 12.000000
>>> 2 k 1.000000
>>> 3 k 1.000000
>>> 4 k 1038.000000
>>> Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>> Binarizing based on threshold
>>> min 1000
>>> max 2999
>>> binval 1
>>> binvalnot 0
>>> Found 458567 values in range
>>> Counting number of voxels
>>> Found 458567 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>> Binarizing based on threshold
>>> min 1000
>>> max 4999
>>> binval 1
>>> binvalnot 0
>>> Found 737102 values in range
>>> Counting number of voxels
>>> Found 737102 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>> Binarizing based on matching values
>>> nMatch 1
>>> 0 16
>>> binval 1
>>> binvalnot 0
>>> Found 19373 values in range
>>> Counting number of voxels
>>> Found 19373 voxels in final mask
>>> mri_binarize done
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz...
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz...
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt
>>> #-------------------------------------
>>> #@# Tensor fit Tue Aug 6 02:18:26 BST 2013
>>> dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> #-------------------------------------
>>> #@# Priors Tue Aug 6 02:18:26 BST 2013
>>> /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_P!
P!
> _!
>> roi2.flt
>> .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>>>
>>>
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP..flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni!
/!
> lh!
>> .ccg_PP_
>> roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>> Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni
>>> Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt
>>> Training subject directory list: /tmp/subj33.02ST.15264.txt
>>> Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk
>>> Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz
>>> Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0
>>> Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz
>>> Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
>>> FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> Number of control points for initial spline: 5
>>> Exclude previously chosen center streamlines: 0
>>> Use truncated streamlines: 0
>>> Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
>>> Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk
>>> INFO: Rejected 572 streamlines for straying off mask
>>> INFO: Rejected 89 streamlines for reversing direction
>>> INFO: Rejected 33 streamlines as length outliers
>>> INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132)
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz
>>> Processing pathway 1 of 18...
>>> Matching streamline ends
>>> INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132)
>>> INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12)
>>> INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7)
>>> INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6)
>>> INFO: Split streamlines into 26 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 39274 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 111 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 95 94 26
>>> 102 105 55
>>> 113 110 78
>>> 115 106 116
>>> 115 107 138
>>> INFO: Distances between consecutive points are 32 26 38 22
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 17.678 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk
>>> INFO: Rejected 441 streamlines for straying off mask
>>> INFO: Rejected 92 streamlines for reversing direction
>>> INFO: Rejected 30 streamlines as length outliers
>>> INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138)
>>> Processing pathway 2 of 18...
>>> Matching streamline ends
>>> INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138)
>>> INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14)
>>> INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7)
>>> INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 46198 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 111 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 81 92 30
>>> 77 104 62
>>> 65 110 82
>>> 66 107 112
>>> 71 110 143
>>> INFO: Distances between consecutive points are 34 24 30 32
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 19.176 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk
>>> INFO: Rejected 19 streamlines for straying off mask
>>> INFO: Rejected 26 streamlines for reversing direction
>>> INFO: Rejected 24 streamlines as length outliers
>>> INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142)
>>> Processing pathway 3 of 18...
>>> Matching streamline ends
>>> INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142)
>>> INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9)
>>> INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5)
>>> INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 39318 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 108 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 130 139 35
>>> 134 104 58
>>> 130 83 68
>>> 116 50 72
>>> 109 35 60
>>> INFO: Distances between consecutive points are 42 24 36 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.382 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk
>>> INFO: Rejected 18 streamlines for straying off mask
>>> INFO: Rejected 20 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132)
>>> Processing pathway 4 of 18...
>>> Matching streamline ends
>>> INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133)
>>> INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9)
>>> INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4)
>>> INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 28709 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 109 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 44 144 40
>>> 48 100 60
>>> 50 84 67
>>> 68 53 76
>>> 76 41 64
>>> INFO: Distances between consecutive points are 48 18 37 19
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 11.356 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk
>>> INFO: Rejected 67 streamlines for straying off mask
>>> INFO: Rejected 35 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104)
>>> Processing pathway 5 of 18...
>>> Matching streamline ends
>>> INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104)
>>> INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5)
>>> INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3)
>>> INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5)
>>> INFO: Split streamlines into 10 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 23343 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 71 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 124 144 40
>>> 128 128 47
>>> 125 126 59
>>> 109 151 62
>>> 107 168 58
>>> INFO: Distances between consecutive points are 18 13 30 18
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 6.691 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk
>>> INFO: Rejected 107 streamlines for straying off mask
>>> INFO: Rejected 120 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113)
>>> Processing pathway 6 of 18...
>>> Matching streamline ends
>>> INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113)
>>> INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6)
>>> INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3)
>>> INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5)
>>> INFO: Split streamlines into 10 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 26122 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 71 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 52 145 44
>>> 53 129 49
>>> 59 133 59
>>> 73 153 61
>>> 76 175 55
>>> INFO: Distances between consecutive points are 17 12 24 23
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.203 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk
>>> INFO: Rejected 2655 streamlines for straying off mask
>>> INFO: Rejected 231 streamlines for reversing direction
>>> INFO: Rejected 155 streamlines as length outliers
>>> INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162)
>>> Processing pathway 7 of 18...
>>> Matching streamline ends
>>> INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166)
>>> INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16)
>>> INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3)
>>> INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17)
>>> INFO: Split streamlines into 37 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 59210 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 107
>>> 116 58 86
>>> 91 91 84
>>> 62 64 87
>>> 72 38 111
>>> INFO: Distances between consecutive points are 33 41 40 37
>>> WARN: Could not find satisfactory control point fit - try 1
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 108
>>> 116 58 86
>>> 90 91 84
>>> 60 62 86
>>> 72 38 112
>>> INFO: Distances between consecutive points are 34 42 42 37
>>> WARN: Could not find satisfactory control point fit - try 2
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 61 86
>>> 89 91 84
>>> 61 60 86
>>> 72 39 112
>>> INFO: Distances between consecutive points are 35 40 42 35
>>> WARN: Could not find satisfactory control point fit - try 3
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 147 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 112
>>> 116 55 86
>>> 93 90 84
>>> 61 64 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 35 42 41 38
>>> WARN: Could not find satisfactory control point fit - try 4
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 112
>>> 116 56 86
>>> 93 90 84
>>> 61 65 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 35 41 41 38
>>> WARN: Could not find satisfactory control point fit - try 5
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 39 107
>>> 115 57 85
>>> 91 90 84
>>> 61 62 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 34 41 41 36
>>> WARN: Could not find satisfactory control point fit - try 6
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 107
>>> 115 60 86
>>> 88 90 85
>>> 61 59 86
>>> 72 39 115
>>> INFO: Distances between consecutive points are 34 40 41 37
>>> WARN: Could not find satisfactory control point fit - try 7
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 148 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 91 90 83
>>> 62 64 87
>>> 76 38 112
>>> INFO: Distances between consecutive points are 35 39 39 39
>>> WARN: Could not find satisfactory control point fit - try 8
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 103
>>> 114 61 85
>>> 89 90 84
>>> 61 63 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 32 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 9
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 34 102
>>> 117 57 85
>>> 92 91 84
>>> 60 63 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 31 42 43 36
>>> WARN: Could not find satisfactory control point fit - try 10
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 57 85
>>> 93 91 84
>>> 60 65 87
>>> 72 43 113
>>> INFO: Distances between consecutive points are 32 42 42 36
>>> WARN: Could not find satisfactory control point fit - try 11
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 57 85
>>> 91 90 84
>>> 61 63 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 33 41 40 35
>>> WARN: Could not find satisfactory control point fit - try 12
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 59 85
>>> 91 91 84
>>> 60 65 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 33 41 41 36
>>> WARN: Could not find satisfactory control point fit - try 13
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 112 67 85
>>> 83 91 84
>>> 64 57 86
>>> 77 39 111
>>> INFO: Distances between consecutive points are 36 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 14
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 33 102
>>> 115 59 84
>>> 90 91 83
>>> 62 62 87
>>> 73 39 111
>>> INFO: Distances between consecutive points are 35 41 41 35
>>> WARN: Could not find satisfactory control point fit - try 15
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 39 108
>>> 118 64 86
>>> 88 90 83
>>> 63 61 88
>>> 77 39 114
>>> INFO: Distances between consecutive points are 37 40 39 37
>>> WARN: Could not find satisfactory control point fit - try 16
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 150 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 34 104
>>> 117 60 88
>>> 92 90 83
>>> 60 66 92
>>> 79 41 103
>>> INFO: Distances between consecutive points are 36 39 41 33
>>> WARN: Could not find satisfactory control point fit - try 17
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 91 90 83
>>> 62 63 87
>>> 77 37 110
>>> INFO: Distances between consecutive points are 35 39 40 38
>>> WARN: Could not find satisfactory control point fit - try 18
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 148 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 66 85
>>> 84 91 84
>>> 64 58 86
>>> 78 39 112
>>> INFO: Distances between consecutive points are 35 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 19
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 60 88
>>> 80 41 111
>>> INFO: Distances between consecutive points are 34 38 40 34
>>> WARN: Could not find satisfactory control point fit - try 20
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 57 85
>>> 93 91 84
>>> 60 64 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 32 42 43 36
>>> WARN: Could not find satisfactory control point fit - try 21
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 37 105
>>> 117 62 89
>>> 91 90 83
>>> 60 67 92
>>> 77 41 103
>>> INFO: Distances between consecutive points are 35 39 40 33
>>> WARN: Could not find satisfactory control point fit - try 22
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 149 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 90 90 83
>>> 63 63 87
>>> 78 38 112
>>> INFO: Distances between consecutive points are 35 40 38 38
>>> WARN: Could not find satisfactory control point fit - try 23
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 60 85
>>> 89 90 85
>>> 60 61 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 35 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 24
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 40 105
>>> 115 61 87
>>> 88 92 85
>>> 62 62 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 41 40 29
>>> WARN: Could not find satisfactory control point fit - try 25
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 117 59 88
>>> 96 88 84
>>> 63 71 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 36 36 37 35
>>> WARN: Could not find satisfactory control point fit - try 26
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 58 85
>>> 88 90 85
>>> 60 61 87
>>> 71 41 113
>>> INFO: Distances between consecutive points are 34 42 40 35
>>> WARN: Could not find satisfactory control point fit - try 27
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 107
>>> 115 60 87
>>> 90 91 85
>>> 62 63 91
>>> 78 41 110
>>> INFO: Distances between consecutive points are 35 40 40 33
>>> WARN: Could not find satisfactory control point fit - try 28
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 152 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 43 108
>>> 113 62 86
>>> 88 93 84
>>> 63 62 89
>>> 80 42 112
>>> INFO: Distances between consecutive points are 34 40 40 35
>>> WARN: Could not find satisfactory control point fit - try 29
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 108
>>> 114 62 88
>>> 88 91 85
>>> 62 61 90
>>> 78 42 110
>>> INFO: Distances between consecutive points are 35 39 40 32
>>> WARN: Could not find satisfactory control point fit - try 30
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 66 85
>>> 85 92 84
>>> 63 59 87
>>> 75 39 107
>>> INFO: Distances between consecutive points are 35 38 40 31
>>> WARN: Could not find satisfactory control point fit - try 31
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 112 67 85
>>> 83 91 84
>>> 64 57 86
>>> 77 39 110
>>> INFO: Distances between consecutive points are 35 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 32
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 42 112
>>> 118 61 89
>>> 91 89 84
>>> 62 63 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 33 39 39 39
>>> WARN: Could not find satisfactory control point fit - try 33
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 35 99
>>> 117 60 86
>>> 92 91 84
>>> 60 66 87
>>> 70 39 106
>>> INFO: Distances between consecutive points are 32 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 34
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 100
>>> 114 63 84
>>> 86 90 85
>>> 61 60 87
>>> 72 39 115
>>> INFO: Distances between consecutive points are 33 39 39 37
>>> WARN: Could not find satisfactory control point fit - try 35
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 147 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 34 105
>>> 117 60 88
>>> 92 90 83
>>> 60 68 92
>>> 79 41 104
>>> INFO: Distances between consecutive points are 36 39 40 35
>>> WARN: Could not find satisfactory control point fit - try 36
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 36 104
>>> 117 62 89
>>> 90 91 83
>>> 59 65 92
>>> 79 42 103
>>> INFO: Distances between consecutive points are 36 40 41 32
>>> WARN: Could not find satisfactory control point fit - try 37
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 34 101
>>> 114 58 85
>>> 93 90 85
>>> 64 65 89
>>> 76 38 109
>>> INFO: Distances between consecutive points are 31 38 38 36
>>> WARN: Could not find satisfactory control point fit - try 38
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 35 99
>>> 117 60 86
>>> 93 91 85
>>> 60 67 87
>>> 69 38 106
>>> INFO: Distances between consecutive points are 31 39 41 36
>>> WARN: Could not find satisfactory control point fit - try 39
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 107 33 102
>>> 117 57 85
>>> 94 91 85
>>> 61 68 87
>>> 70 39 106
>>> INFO: Distances between consecutive points are 31 41 40 36
>>> WARN: Could not find satisfactory control point fit - try 40
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 34 99
>>> 117 61 86
>>> 91 91 84
>>> 60 65 87
>>> 70 39 107
>>> INFO: Distances between consecutive points are 33 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 41
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 42 107
>>> 112 65 86
>>> 84 91 84
>>> 64 59 86
>>> 78 40 111
>>> INFO: Distances between consecutive points are 34 38 38 34
>>> WARN: Could not find satisfactory control point fit - try 42
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 101 41 115
>>> 116 56 87
>>> 98 88 84
>>> 64 73 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 35 37 37 37
>>> WARN: Could not find satisfactory control point fit - try 43
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 35 100
>>> 114 62 84
>>> 88 90 84
>>> 62 60 87
>>> 73 42 112
>>> INFO: Distances between consecutive points are 35 38 40 33
>>> WARN: Could not find satisfactory control point fit - try 44
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 62 89
>>> 90 89 84
>>> 64 62 88
>>> 79 39 114
>>> INFO: Distances between consecutive points are 34 39 38 38
>>> WARN: Could not find satisfactory control point fit - try 45
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 117 60 87
>>> 96 90 84
>>> 64 72 87
>>> 72 38 97
>>> INFO: Distances between consecutive points are 34 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 46
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 62 89
>>> 89 89 83
>>> 64 60 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 34 40 39 36
>>> WARN: Could not find satisfactory control point fit - try 47
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 41 106
>>> 113 63 87
>>> 87 92 84
>>> 62 63 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 39 39 30
>>> WARN: Could not find satisfactory control point fit - try 48
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 41 107
>>> 113 64 87
>>> 87 91 84
>>> 62 61 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 34 38 39 28
>>> WARN: Could not find satisfactory control point fit - try 49
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 42 107
>>> 113 62 86
>>> 89 92 84
>>> 62 65 90
>>> 70 36 100
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 50
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 116 57 88
>>> 98 88 84
>>> 66 74 86
>>> 72 38 97
>>> INFO: Distances between consecutive points are 34 36 35 38
>>> WARN: Could not find satisfactory control point fit - try 51
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 61 88
>>> 77 38 106
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 52
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 39 108
>>> 117 60 85
>>> 96 90 83
>>> 64 72 87
>>> 72 38 97
>>> INFO: Distances between consecutive points are 35 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 53
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 112 67 85
>>> 82 90 84
>>> 65 57 84
>>> 78 39 112
>>> INFO: Distances between consecutive points are 34 38 37 36
>>> WARN: Could not find satisfactory control point fit - try 54
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 61 84
>>> 89 90 84
>>> 62 64 87
>>> 72 40 111
>>> INFO: Distances between consecutive points are 35 38 38 35
>>> WARN: Could not find satisfactory control point fit - try 55
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 130 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 42 107
>>> 118 63 89
>>> 93 90 84
>>> 62 69 88
>>> 71 37 97
>>> INFO: Distances between consecutive points are 31 37 38 34
>>> WARN: Could not find satisfactory control point fit - try 56
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 41 106
>>> 112 66 87
>>> 85 91 84
>>> 63 59 89
>>> 79 41 110
>>> INFO: Distances between consecutive points are 34 37 39 32
>>> WARN: Could not find satisfactory control point fit - try 57
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 66 86
>>> 85 92 84
>>> 63 60 87
>>> 77 38 106
>>> INFO: Distances between consecutive points are 35 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 58
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 40 106
>>> 114 63 89
>>> 89 92 85
>>> 62 66 91
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 38 38 32
>>> WARN: Could not find satisfactory control point fit - try 59
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 38 93
>>> 113 68 87
>>> 86 91 85
>>> 60 60 86
>>> 72 38 112
>>> INFO: Distances between consecutive points are 32 36 40 36
>>> WARN: Could not find satisfactory control point fit - try 60
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 40 107
>>> 113 64 89
>>> 87 91 85
>>> 62 61 90
>>> 78 41 110
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 61
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 128 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 43 107
>>> 118 61 88
>>> 95 89 84
>>> 63 72 88
>>> 71 37 97
>>> INFO: Distances between consecutive points are 29 36 36 37
>>> WARN: Could not find satisfactory control point fit - try 62
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 113 65 86
>>> 87 93 84
>>> 63 62 87
>>> 77 37 105
>>> INFO: Distances between consecutive points are 34 38 39 34
>>> WARN: Could not find satisfactory control point fit - try 63
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 60 85
>>> 92 88 83
>>> 60 68 85
>>> 72 35 102
>>> INFO: Distances between consecutive points are 35 40 38 39
>>> WARN: Could not find satisfactory control point fit - try 64
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 60 88
>>> 91 89 84
>>> 64 61 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 34 40 39 37
>>> WARN: Could not find satisfactory control point fit - try 65
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 63 86
>>> 89 88 83
>>> 62 63 85
>>> 75 35 108
>>> INFO: Distances between consecutive points are 37 40 37 38
>>> WARN: Could not find satisfactory control point fit - try 66
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 62 86
>>> 90 88 83
>>> 61 65 85
>>> 74 35 106
>>> INFO: Distances between consecutive points are 36 40 37 39
>>> WARN: Could not find satisfactory control point fit - try 67
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 32 101
>>> 114 59 83
>>> 90 91 84
>>> 62 62 87
>>> 72 40 111
>>> INFO: Distances between consecutive points are 35 40 40 34
>>> WARN: Could not find satisfactory control point fit - try 68
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 65 86
>>> 86 92 84
>>> 63 62 88
>>> 77 38 108
>>> INFO: Distances between consecutive points are 34 38 38 34
>>> WARN: Could not find satisfactory control point fit - try 69
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 127 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 40 100
>>> 120 66 87
>>> 89 90 84
>>> 59 68 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 33 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 70
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 127 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 40 100
>>> 120 66 87
>>> 89 90 84
>>> 59 68 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 33 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 71
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 113 64 86
>>> 89 93 83
>>> 64 66 90
>>> 71 36 100
>>> INFO: Distances between consecutive points are 34 38 37 32
>>> WARN: Could not find satisfactory control point fit - try 72
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 61 86
>>> 91 88 83
>>> 61 67 85
>>> 74 35 106
>>> INFO: Distances between consecutive points are 35 40 37 40
>>> WARN: Could not find satisfactory control point fit - try 73
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 45 114
>>> 115 62 88
>>> 89 91 84
>>> 64 63 87
>>> 75 34 104
>>> INFO: Distances between consecutive points are 35 39 38 35
>>> WARN: Could not find satisfactory control point fit - try 74
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 61 87
>>> 77 38 106
>>> INFO: Distances between consecutive points are 34 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 75
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 38 111
>>> 119 61 87
>>> 91 90 83
>>> 59 67 86
>>> 71 35 102
>>> INFO: Distances between consecutive points are 38 41 40 38
>>> WARN: Could not find satisfactory control point fit - try 76
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 112
>>> 116 59 85
>>> 92 88 82
>>> 63 66 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 39 38 36 40
>>> WARN: Could not find satisfactory control point fit - try 77
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 133 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 62 84
>>> 88 90 84
>>> 61 62 87
>>> 72 41 110
>>> INFO: Distances between consecutive points are 36 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 78
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 117 59 88
>>> 96 89 84
>>> 63 72 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 33 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 79
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 150 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 117 60 85
>>> 90 90 82
>>> 64 63 87
>>> 77 38 110
>>> INFO: Distances between consecutive points are 39 40 38 36
>>> WARN: Could not find satisfactory control point fit - try 80
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 111 68 85
>>> 82 90 84
>>> 64 59 85
>>> 79 40 110
>>> INFO: Distances between consecutive points are 34 36 36 35
>>> WARN: Could not find satisfactory control point fit - try 81
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 111 68 85
>>> 83 90 84
>>> 64 59 85
>>> 80 42 111
>>> INFO: Distances between consecutive points are 34 36 36 35
>>> WARN: Could not find satisfactory control point fit - try 82
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 33 102
>>> 114 58 83
>>> 91 90 84
>>> 63 65 87
>>> 73 42 113
>>> INFO: Distances between consecutive points are 34 39 38 36
>>> WARN: Could not find satisfactory control point fit - try 83
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 59 83
>>> 90 90 84
>>> 62 60 87
>>> 73 42 113
>>> INFO: Distances between consecutive points are 34 39 41 33
>>> WARN: Could not find satisfactory control point fit - try 84
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 112
>>> 116 58 85
>>> 93 88 82
>>> 63 67 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 39 38 37 41
>>> WARN: Could not find satisfactory control point fit - try 85
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 38 92
>>> 113 67 84
>>> 85 90 84
>>> 62 60 86
>>> 73 38 111
>>> INFO: Distances between consecutive points are 32 36 38 35
>>> WARN: Could not find satisfactory control point fit - try 86
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 62 86
>>> 90 88 83
>>> 61 64 85
>>> 75 35 108
>>> INFO: Distances between consecutive points are 36 40 38 40
>>> WARN: Could not find satisfactory control point fit - try 87
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 112
>>> 116 58 85
>>> 94 88 82
>>> 63 67 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 38 37 37 41
>>> WARN: Could not find satisfactory control point fit - try 88
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 119 60 85
>>> 93 88 83
>>> 62 69 85
>>> 76 37 104
>>> INFO: Distances between consecutive points are 34 38 36 40
>>> WARN: Could not find satisfactory control point fit - try 89
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 36 100
>>> 117 62 86
>>> 92 91 86
>>> 62 67 89
>>> 78 41 107
>>> INFO: Distances between consecutive points are 33 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 90
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 113
>>> 116 57 88
>>> 97 88 84
>>> 65 73 87
>>> 71 38 97
>>> INFO: Distances between consecutive points are 32 37 35 37
>>> WARN: Could not find satisfactory control point fit - try 91
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 119 60 85
>>> 95 88 83
>>> 62 70 85
>>> 75 36 105
>>> INFO: Distances between consecutive points are 34 37 38 42
>>> WARN: Could not find satisfactory control point fit - try 92
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 130 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 42 107
>>> 117 62 86
>>> 94 90 83
>>> 64 72 87
>>> 72 40 96
>>> INFO: Distances between consecutive points are 31 36 35 34
>>> WARN: Could not find satisfactory control point fit - try 93
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 45 114
>>> 114 62 88
>>> 90 89 84
>>> 64 65 87
>>> 74 33 101
>>> INFO: Distances between consecutive points are 35 36 36 36
>>> WARN: Could not find satisfactory control point fit - try 94
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 37 103
>>> 114 68 86
>>> 85 91 84
>>> 64 62 86
>>> 74 33 101
>>> INFO: Distances between consecutive points are 36 37 36 34
>>> WARN: Could not find satisfactory control point fit - try 95
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 112
>>> 116 59 85
>>> 93 89 81
>>> 63 68 84
>>> 76 35 106
>>> INFO: Distances between consecutive points are 39 38 37 42
>>> WARN: Could not find satisfactory control point fit - try 96
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 151 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 60 84
>>> 92 90 82
>>> 64 66 86
>>> 77 38 110
>>> INFO: Distances between consecutive points are 36 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 97
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 133 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 39 106
>>> 120 64 87
>>> 89 90 84
>>> 59 67 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 35 41 38 38
>>> WARN: Could not find satisfactory control point fit - try 98
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 35 99
>>> 114 61 81
>>> 89 91 83
>>> 62 61 86
>>> 74 40 112
>>> INFO: Distances between consecutive points are 36 39 40 36
>>> WARN: Could not find satisfactory control point fit - try 99
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 129 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 39 92
>>> 111 69 84
>>> 83 89 85
>>> 61 59 86
>>> 72 39 112
>>> INFO: Distances between consecutive points are 32 34 37 35
>>> WARN: Could not find satisfactory control point fit - try 100
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 2212.85 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk
>>> INFO: Rejected 839 streamlines for straying off mask
>>> INFO: Rejected 304 streamlines for reversing direction
>>> INFO: Rejected 45 streamlines as length outliers
>>> INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119)
>>> Processing pathway 8 of 18...
>>> Matching streamline ends
>>> INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119)
>>> INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12)
>>> INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3)
>>> INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11)
>>> INFO: Split streamlines into 23 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 67506 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 104 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 98 193 75
>>> 108 164 69
>>> 88 150 75
>>> 73 168 69
>>> 83 193 81
>>> INFO: Distances between consecutive points are 31 25 24 29
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 57.864 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk
>>> INFO: Rejected 83 streamlines for straying off mask
>>> INFO: Rejected 6 streamlines for reversing direction
>>> INFO: Rejected 47 streamlines as length outliers
>>> INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92)
>>> Processing pathway 9 of 18...
>>> Matching streamline ends
>>> INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94)
>>> INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13)
>>> INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5)
>>> INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6)
>>> INFO: Split streamlines into 17 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 42884 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 72 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 107 187 71
>>> 113 167 73
>>> 111 158 74
>>> 107 138 80
>>> 95 113 81
>>> INFO: Distances between consecutive points are 21 9 21 28
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 9.28 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk
>>> INFO: Rejected 109 streamlines for straying off mask
>>> INFO: Rejected 20 streamlines for reversing direction
>>> INFO: Rejected 33 streamlines as length outliers
>>> INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93)
>>> Processing pathway 10 of 18...
>>> Matching streamline ends
>>> INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92)
>>> INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12)
>>> INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5)
>>> INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6)
>>> INFO: Split streamlines into 18 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 38520 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 81 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 69 194 85
>>> 71 186 82
>>> 68 157 78
>>> 81 115 78
>>> 82 111 78
>>> INFO: Distances between consecutive points are 9 29 44 4
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.144 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk
>>> INFO: Rejected 18 streamlines for straying off mask
>>> INFO: Rejected 3 streamlines for reversing direction
>>> INFO: Rejected 6 streamlines as length outliers
>>> INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134)
>>> Processing pathway 11 of 18...
>>> Matching streamline ends
>>> INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134)
>>> INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7)
>>> INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2)
>>> INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8)
>>> INFO: Split streamlines into 22 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 20097 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 93 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 101 74 96
>>> 101 81 101
>>> 96 112 105
>>> 97 139 100
>>> 97 163 79
>>> INFO: Distances between consecutive points are 9 32 27 32
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.013 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk
>>> INFO: Rejected 43 streamlines for straying off mask
>>> INFO: Rejected 9 streamlines for reversing direction
>>> INFO: Rejected 26 streamlines as length outliers
>>> INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124)
>>> Processing pathway 12 of 18...
>>> Matching streamline ends
>>> INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124)
>>> INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9)
>>> INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2)
>>> INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7)
>>> INFO: Split streamlines into 22 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 18871 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 81 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 81 82 98
>>> 81 98 104
>>> 83 128 104
>>> 82 160 90
>>> 86 164 93
>>> INFO: Distances between consecutive points are 17 30 35 6
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 6.164 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk
>>> INFO: Rejected 52 streamlines for straying off mask
>>> INFO: Rejected 62 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95)
>>> Processing pathway 13 of 18...
>>> Matching streamline ends
>>> INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92)
>>> INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12)
>>> INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5)
>>> INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11)
>>> INFO: Split streamlines into 12 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 17882 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 65 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 104 74 79
>>> 105 85 70
>>> 114 106 49
>>> 117 118 44
>>> 118 133 39
>>> INFO: Distances between consecutive points are 14 31 13 16
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 4.921 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk
>>> INFO: Rejected 491 streamlines for straying off mask
>>> INFO: Rejected 76 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99)
>>> Processing pathway 14 of 18...
>>> Matching streamline ends
>>> INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99)
>>> INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8)
>>> INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2)
>>> INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4)
>>> INFO: Split streamlines into 13 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 15900 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 58 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 74 76 85
>>> 65 107 47
>>> 61 115 43
>>> 61 119 42
>>> 64 128 39
>>> INFO: Distances between consecutive points are 50 10 4 10
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 3.905 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk
>>> INFO: Rejected 181 streamlines for straying off mask
>>> INFO: Rejected 652 streamlines for reversing direction
>>> INFO: Rejected 40 streamlines as length outliers
>>> INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102)
>>> Processing pathway 15 of 18...
>>> Matching streamline ends
>>> INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103)
>>> INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11)
>>> INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3)
>>> INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12)
>>> INFO: Split streamlines into 14 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 50360 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 67 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 150 131 96
>>> 134 121 97
>>> 128 98 103
>>> 131 85 104
>>> 146 86 115
>>> INFO: Distances between consecutive points are 19 25 13 19
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 7.66 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk
>>> INFO: Rejected 311 streamlines for straying off mask
>>> INFO: Rejected 458 streamlines for reversing direction
>>> INFO: Rejected 95 streamlines as length outliers
>>> INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98)
>>> Processing pathway 16 of 18...
>>> Matching streamline ends
>>> INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101)
>>> INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12)
>>> INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3)
>>> INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11)
>>> INFO: Split streamlines into 15 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 65106 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 75 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 31 133 95
>>> 50 121 100
>>> 53 100 105
>>> 53 83 102
>>> 42 73 113
>>> INFO: Distances between consecutive points are 23 22 17 18
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 16.605 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk
>>> INFO: Rejected 353 streamlines for straying off mask
>>> INFO: Rejected 59 streamlines for reversing direction
>>> INFO: Rejected 77 streamlines as length outliers
>>> INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133)
>>> Processing pathway 17 of 18...
>>> Matching streamline ends
>>> INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133)
>>> INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10)
>>> INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3)
>>> INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9)
>>> INFO: Split streamlines into 23 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 45630 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 94 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 148 135 97
>>> 130 120 98
>>> 125 87 98
>>> 135 80 70
>>> 149 73 70
>>> INFO: Distances between consecutive points are 23 33 31 16
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.592 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk
>>> INFO: Rejected 61 streamlines for straying off mask
>>> INFO: Rejected 12 streamlines for reversing direction
>>> INFO: Rejected 44 streamlines as length outliers
>>> INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132)
>>> Processing pathway 18 of 18...
>>> Matching streamline ends
>>> INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132)
>>> INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15)
>>> INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3)
>>> INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8)
>>> INFO: Split streamlines into 24 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 31157 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 95 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 33 139 102
>>> 52 127 99
>>> 55 93 101
>>> 46 81 79
>>> 29 71 78
>>> INFO: Distances between consecutive points are 23 34 27 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.246 sec.
>>> dmri_train done
>>> #-------------------------------------
>>> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 08:19:08 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 6936780 58966460 0 372776 5055680
>>> -/+ buffers/cache: 1508324 64394916
>>> Swap: 67032060 1816772 65215288
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
>>> WARN: Running FSL's bedbost locally - this might take a while
>>> WARN: It is recommended to run this step on a cluster
>>> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat
>>> ^C
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log
>>> Tue Aug 6 01:57:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5980064 59923176 0 83692 4482000
>>> -/+ buffers/cache: 1414372 64488868
>>> Swap: 67032060 1824148 65207912
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5980856 59922384 0 83692 4482000
>>> -/+ buffers/cache: 1415164 64488076
>>> Swap: 67032060 1824148 65207912
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 01:57:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:00:22 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5982784 59920456 0 83932 4482156
>>> -/+ buffers/cache: 1416696 64486544
>>> Swap: 67032060 1824120 65207940
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984932 59918308 0 83932 4482156
>>> -/+ buffers/cache: 1418844 64484396
>>> Swap: 67032060 1824120 65207940
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:00:32 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5983252 59919988 0 83956 4482156
>>> -/+ buffers/cache: 1417140 64486100
>>> Swap: 67032060 1824120 65207940
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984752 59918488 0 83956 4482156
>>> -/+ buffers/cache: 1418640 64484600
>>> Swap: 67032060 1824120 65207940
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:00:33 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:01:42 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984044 59919196 0 84144 4482192
>>> -/+ buffers/cache: 1417708 64485532
>>> Swap: 67032060 1824104 65207956
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5987064 59916176 0 84144 4482192
>>> -/+ buffers/cache: 1420728 64482512
>>> Swap: 67032060 1824104 65207956
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:01:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5985300 59917940 0 84160 4482188
>>> -/+ buffers/cache: 1418952 64484288
>>> Swap: 67032060 1824104 65207956
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5986324 59916916 0 84160 4482188
>>> -/+ buffers/cache: 1419976 64483264
>>> Swap: 67032060 1824104 65207956
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:01:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:02:48 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984700 59918540 0 84336 4482212
>>> -/+ buffers/cache: 1418152 64485088
>>> Swap: 67032060 1824076 65207984
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5987120 59916120 0 84336 4482216
>>> -/+ buffers/cache: 1420568 64482672
>>> Swap: 67032060 1824076 65207984
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:02:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5986420 59916820 0 84348 4482212
>>> -/+ buffers/cache: 1419860 64483380
>>> Swap: 67032060 1824076 65207984
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5988520 59914720 0 84348 4482212
>>> -/+ buffers/cache: 1421960 64481280
>>> Swap: 67032060 1824076 65207984
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:02:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
>>> #-------------------------------------
>>> #@# Masks Tue Aug 6 02:04:33 BST 2013
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> Binarizing based on matching values
>>> nMatch 5
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> binval 1
>>> binvalnot 0
>>> Found 467858 values in range
>>> Counting number of voxels
>>> Found 467858 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> Binarizing based on matching values
>>> nMatch 8
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> 5 28
>>> 6 60
>>> 7 16
>>> binval 1
>>> binvalnot 0
>>> Found 494467 values in range
>>> Counting number of voxels
>>> Found 494467 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> Binarizing based on matching values
>>> nMatch 2
>>> 0 4
>>> 1 43
>>> binval 0
>>> binvalnot 1
>>> Found 7382 values in range
>>> Counting number of voxels
>>> Found 7382 voxels in final mask
>>> mri_binarize done
>>> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> subject 02ST
>>> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> useribbon 0
>>> baseoffset 0
>>> labeling wm
>>> labeling hypo-intensities as wm
>>> dmaxctx 2.000000
>>> RipUnknown 0
>>>
>>> Reading lh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>>>
>>> Reading lh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>>>
>>> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>>
>>> Reading rh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>>>
>>> Reading rh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>>>
>>> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>> Have color table for lh white annotation
>>> Have color table for rh white annotation
>>> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
>>> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>>>
>>> Building hash of lh white
>>>
>>> Building hash of lh pial
>>>
>>> Building hash of rh white
>>>
>>> Building hash of rh pial
>>>
>>> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
>>> ASeg Vox2RAS: -----------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> -------------------------
>>>
>>> Labeling Slice
>>> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
>>> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
>>> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
>>> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
>>> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
>>> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
>>> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
>>> 140 141 142
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:09:35 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5990572 59912668 0 85028 4482988
>>> -/+ buffers/cache: 1422556 64480684
>>> Swap: 67032060 1824048 65208012
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5992728 59910512 0 85028 4482988
>>> -/+ buffers/cache: 1424712 64478528
>>> Swap: 67032060 1824048 65208012
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:11:25 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5989716 59913524 0 85072 4482980
>>> -/+ buffers/cache: 1421664 64481576
>>> Swap: 67032060 1824048 65208012
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5991732 59911508 0 85072 4482980
>>> -/+ buffers/cache: 1423680 64479560
>>> Swap: 67032060 1824048 65208012
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:11:26 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, 1)
>>> k_ras = (-0, -1, -0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> INFO: input image orientation is LSP
>>> INFO: input image determinant is -12.5224
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
>>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
>>> #-------------------------------------
>>> #@# Masks Tue Aug 6 02:15:07 BST 2013
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> Binarizing based on matching values
>>> nMatch 5
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> binval 1
>>> binvalnot 0
>>> Found 467858 values in range
>>> Counting number of voxels
>>> Found 467858 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> Binarizing based on matching values
>>> nMatch 8
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> 5 28
>>> 6 60
>>> 7 16
>>> binval 1
>>> binvalnot 0
>>> Found 494467 values in range
>>> Counting number of voxels
>>> Found 494467 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> Binarizing based on matching values
>>> nMatch 2
>>> 0 4
>>> 1 43
>>> binval 0
>>> binvalnot 1
>>> Found 7382 values in range
>>> Counting number of voxels
>>> Found 7382 voxels in final mask
>>> mri_binarize done
>>> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> subject 02ST
>>> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> useribbon 0
>>> baseoffset 0
>>> labeling wm
>>> labeling hypo-intensities as wm
>>> dmaxctx 2.000000
>>> RipUnknown 0
>>>
>>> Reading lh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>>>
>>> Reading lh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>>>
>>> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>>
>>> Reading rh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>>>
>>> Reading rh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>>>
>>> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>> Have color table for lh white annotation
>>> Have color table for rh white annotation
>>> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
>>> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>>>
>>> Building hash of lh white
>>>
>>> Building hash of lh pial
>>>
>>> Building hash of rh white
>>>
>>> Building hash of rh pial
>>>
>>> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
>>> ASeg Vox2RAS: -----------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> -------------------------
>>>
>>> Labeling Slice
>>> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
>>> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
>>> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
>>> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
>>> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
>>> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
>>> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
>>> 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
>>> 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
>>> 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
>>> 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
>>> 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
>>> 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358
>>> Used brute-force search on 0 voxels
>>> Fixing Parahip LH WM
>>> Found 6 clusters
>>> 0 k 4.000000
>>> 1 k 1038.000000
>>> 2 k 3.000000
>>> 3 k 1.000000
>>> 4 k 2.000000
>>> 5 k 1.000000
>>> Fixing Parahip RH WM
>>> Found 5 clusters
>>> 0 k 1.000000
>>> 1 k 12.000000
>>> 2 k 1.000000
>>> 3 k 1.000000
>>> 4 k 1038.000000
>>> Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>> Binarizing based on threshold
>>> min 1000
>>> max 2999
>>> binval 1
>>> binvalnot 0
>>> Found 458567 values in range
>>> Counting number of voxels
>>> Found 458567 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>> Binarizing based on threshold
>>> min 1000
>>> max 4999
>>> binval 1
>>> binvalnot 0
>>> Found 737102 values in range
>>> Counting number of voxels
>>> Found 737102 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>> Binarizing based on matching values
>>> nMatch 1
>>> 0 16
>>> binval 1
>>> binvalnot 0
>>> Found 19373 values in range
>>> Counting number of voxels
>>> Found 19373 voxels in final mask
>>> mri_binarize done
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz...
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz...
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt
>>> #-------------------------------------
>>> #@# Tensor fit Tue Aug 6 02:18:26 BST 2013
>>> dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> #-------------------------------------
>>> #@# Priors Tue Aug 6 02:18:26 BST 2013
>>> /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_P!
P!
> _!
>> roi2.flt
>> .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>>>
>>>
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP..flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni!
/!
> lh!
>> .ccg_PP_
>> roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>> Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni
>>> Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt
>>> Training subject directory list: /tmp/subj33.02ST.15264.txt
>>> Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk
>>> Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz
>>> Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0
>>> Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz
>>> Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
>>> FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> Number of control points for initial spline: 5
>>> Exclude previously chosen center streamlines: 0
>>> Use truncated streamlines: 0
>>> Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
>>> Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk
>>> INFO: Rejected 572 streamlines for straying off mask
>>> INFO: Rejected 89 streamlines for reversing direction
>>> INFO: Rejected 33 streamlines as length outliers
>>> INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132)
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz
>>> Processing pathway 1 of 18...
>>> Matching streamline ends
>>> INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132)
>>> INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12)
>>> INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7)
>>> INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6)
>>> INFO: Split streamlines into 26 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 39274 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 111 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 95 94 26
>>> 102 105 55
>>> 113 110 78
>>> 115 106 116
>>> 115 107 138
>>> INFO: Distances between consecutive points are 32 26 38 22
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 17.678 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk
>>> INFO: Rejected 441 streamlines for straying off mask
>>> INFO: Rejected 92 streamlines for reversing direction
>>> INFO: Rejected 30 streamlines as length outliers
>>> INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138)
>>> Processing pathway 2 of 18...
>>> Matching streamline ends
>>> INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138)
>>> INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14)
>>> INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7)
>>> INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 46198 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 111 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 81 92 30
>>> 77 104 62
>>> 65 110 82
>>> 66 107 112
>>> 71 110 143
>>> INFO: Distances between consecutive points are 34 24 30 32
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 19.176 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk
>>> INFO: Rejected 19 streamlines for straying off mask
>>> INFO: Rejected 26 streamlines for reversing direction
>>> INFO: Rejected 24 streamlines as length outliers
>>> INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142)
>>> Processing pathway 3 of 18...
>>> Matching streamline ends
>>> INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142)
>>> INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9)
>>> INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5)
>>> INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 39318 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 108 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 130 139 35
>>> 134 104 58
>>> 130 83 68
>>> 116 50 72
>>> 109 35 60
>>> INFO: Distances between consecutive points are 42 24 36 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.382 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk
>>> INFO: Rejected 18 streamlines for straying off mask
>>> INFO: Rejected 20 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132)
>>> Processing pathway 4 of 18...
>>> Matching streamline ends
>>> INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133)
>>> INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9)
>>> INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4)
>>> INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 28709 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 109 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 44 144 40
>>> 48 100 60
>>> 50 84 67
>>> 68 53 76
>>> 76 41 64
>>> INFO: Distances between consecutive points are 48 18 37 19
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 11.356 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk
>>> INFO: Rejected 67 streamlines for straying off mask
>>> INFO: Rejected 35 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104)
>>> Processing pathway 5 of 18...
>>> Matching streamline ends
>>> INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104)
>>> INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5)
>>> INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3)
>>> INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5)
>>> INFO: Split streamlines into 10 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 23343 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 71 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 124 144 40
>>> 128 128 47
>>> 125 126 59
>>> 109 151 62
>>> 107 168 58
>>> INFO: Distances between consecutive points are 18 13 30 18
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 6.691 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk
>>> INFO: Rejected 107 streamlines for straying off mask
>>> INFO: Rejected 120 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113)
>>> Processing pathway 6 of 18...
>>> Matching streamline ends
>>> INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113)
>>> INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6)
>>> INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3)
>>> INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5)
>>> INFO: Split streamlines into 10 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 26122 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 71 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 52 145 44
>>> 53 129 49
>>> 59 133 59
>>> 73 153 61
>>> 76 175 55
>>> INFO: Distances between consecutive points are 17 12 24 23
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.203 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk
>>> INFO: Rejected 2655 streamlines for straying off mask
>>> INFO: Rejected 231 streamlines for reversing direction
>>> INFO: Rejected 155 streamlines as length outliers
>>> INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162)
>>> Processing pathway 7 of 18...
>>> Matching streamline ends
>>> INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166)
>>> INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16)
>>> INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3)
>>> INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17)
>>> INFO: Split streamlines into 37 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 59210 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 107
>>> 116 58 86
>>> 91 91 84
>>> 62 64 87
>>> 72 38 111
>>> INFO: Distances between consecutive points are 33 41 40 37
>>> WARN: Could not find satisfactory control point fit - try 1
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 108
>>> 116 58 86
>>> 90 91 84
>>> 60 62 86
>>> 72 38 112
>>> INFO: Distances between consecutive points are 34 42 42 37
>>> WARN: Could not find satisfactory control point fit - try 2
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 61 86
>>> 89 91 84
>>> 61 60 86
>>> 72 39 112
>>> INFO: Distances between consecutive points are 35 40 42 35
>>> WARN: Could not find satisfactory control point fit - try 3
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 147 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 112
>>> 116 55 86
>>> 93 90 84
>>> 61 64 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 35 42 41 38
>>> WARN: Could not find satisfactory control point fit - try 4
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 112
>>> 116 56 86
>>> 93 90 84
>>> 61 65 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 35 41 41 38
>>> WARN: Could not find satisfactory control point fit - try 5
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 39 107
>>> 115 57 85
>>> 91 90 84
>>> 61 62 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 34 41 41 36
>>> WARN: Could not find satisfactory control point fit - try 6
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 107
>>> 115 60 86
>>> 88 90 85
>>> 61 59 86
>>> 72 39 115
>>> INFO: Distances between consecutive points are 34 40 41 37
>>> WARN: Could not find satisfactory control point fit - try 7
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 148 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 91 90 83
>>> 62 64 87
>>> 76 38 112
>>> INFO: Distances between consecutive points are 35 39 39 39
>>> WARN: Could not find satisfactory control point fit - try 8
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 103
>>> 114 61 85
>>> 89 90 84
>>> 61 63 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 32 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 9
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 34 102
>>> 117 57 85
>>> 92 91 84
>>> 60 63 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 31 42 43 36
>>> WARN: Could not find satisfactory control point fit - try 10
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 57 85
>>> 93 91 84
>>> 60 65 87
>>> 72 43 113
>>> INFO: Distances between consecutive points are 32 42 42 36
>>> WARN: Could not find satisfactory control point fit - try 11
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 57 85
>>> 91 90 84
>>> 61 63 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 33 41 40 35
>>> WARN: Could not find satisfactory control point fit - try 12
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 59 85
>>> 91 91 84
>>> 60 65 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 33 41 41 36
>>> WARN: Could not find satisfactory control point fit - try 13
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 112 67 85
>>> 83 91 84
>>> 64 57 86
>>> 77 39 111
>>> INFO: Distances between consecutive points are 36 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 14
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 33 102
>>> 115 59 84
>>> 90 91 83
>>> 62 62 87
>>> 73 39 111
>>> INFO: Distances between consecutive points are 35 41 41 35
>>> WARN: Could not find satisfactory control point fit - try 15
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 39 108
>>> 118 64 86
>>> 88 90 83
>>> 63 61 88
>>> 77 39 114
>>> INFO: Distances between consecutive points are 37 40 39 37
>>> WARN: Could not find satisfactory control point fit - try 16
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 150 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 34 104
>>> 117 60 88
>>> 92 90 83
>>> 60 66 92
>>> 79 41 103
>>> INFO: Distances between consecutive points are 36 39 41 33
>>> WARN: Could not find satisfactory control point fit - try 17
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 91 90 83
>>> 62 63 87
>>> 77 37 110
>>> INFO: Distances between consecutive points are 35 39 40 38
>>> WARN: Could not find satisfactory control point fit - try 18
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 148 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 66 85
>>> 84 91 84
>>> 64 58 86
>>> 78 39 112
>>> INFO: Distances between consecutive points are 35 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 19
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 60 88
>>> 80 41 111
>>> INFO: Distances between consecutive points are 34 38 40 34
>>> WARN: Could not find satisfactory control point fit - try 20
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 57 85
>>> 93 91 84
>>> 60 64 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 32 42 43 36
>>> WARN: Could not find satisfactory control point fit - try 21
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 37 105
>>> 117 62 89
>>> 91 90 83
>>> 60 67 92
>>> 77 41 103
>>> INFO: Distances between consecutive points are 35 39 40 33
>>> WARN: Could not find satisfactory control point fit - try 22
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 149 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 90 90 83
>>> 63 63 87
>>> 78 38 112
>>> INFO: Distances between consecutive points are 35 40 38 38
>>> WARN: Could not find satisfactory control point fit - try 23
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 60 85
>>> 89 90 85
>>> 60 61 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 35 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 24
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 40 105
>>> 115 61 87
>>> 88 92 85
>>> 62 62 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 41 40 29
>>> WARN: Could not find satisfactory control point fit - try 25
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 117 59 88
>>> 96 88 84
>>> 63 71 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 36 36 37 35
>>> WARN: Could not find satisfactory control point fit - try 26
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 58 85
>>> 88 90 85
>>> 60 61 87
>>> 71 41 113
>>> INFO: Distances between consecutive points are 34 42 40 35
>>> WARN: Could not find satisfactory control point fit - try 27
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 107
>>> 115 60 87
>>> 90 91 85
>>> 62 63 91
>>> 78 41 110
>>> INFO: Distances between consecutive points are 35 40 40 33
>>> WARN: Could not find satisfactory control point fit - try 28
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 152 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 43 108
>>> 113 62 86
>>> 88 93 84
>>> 63 62 89
>>> 80 42 112
>>> INFO: Distances between consecutive points are 34 40 40 35
>>> WARN: Could not find satisfactory control point fit - try 29
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 108
>>> 114 62 88
>>> 88 91 85
>>> 62 61 90
>>> 78 42 110
>>> INFO: Distances between consecutive points are 35 39 40 32
>>> WARN: Could not find satisfactory control point fit - try 30
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 66 85
>>> 85 92 84
>>> 63 59 87
>>> 75 39 107
>>> INFO: Distances between consecutive points are 35 38 40 31
>>> WARN: Could not find satisfactory control point fit - try 31
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 112 67 85
>>> 83 91 84
>>> 64 57 86
>>> 77 39 110
>>> INFO: Distances between consecutive points are 35 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 32
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 42 112
>>> 118 61 89
>>> 91 89 84
>>> 62 63 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 33 39 39 39
>>> WARN: Could not find satisfactory control point fit - try 33
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 35 99
>>> 117 60 86
>>> 92 91 84
>>> 60 66 87
>>> 70 39 106
>>> INFO: Distances between consecutive points are 32 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 34
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 100
>>> 114 63 84
>>> 86 90 85
>>> 61 60 87
>>> 72 39 115
>>> INFO: Distances between consecutive points are 33 39 39 37
>>> WARN: Could not find satisfactory control point fit - try 35
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 147 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 34 105
>>> 117 60 88
>>> 92 90 83
>>> 60 68 92
>>> 79 41 104
>>> INFO: Distances between consecutive points are 36 39 40 35
>>> WARN: Could not find satisfactory control point fit - try 36
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 36 104
>>> 117 62 89
>>> 90 91 83
>>> 59 65 92
>>> 79 42 103
>>> INFO: Distances between consecutive points are 36 40 41 32
>>> WARN: Could not find satisfactory control point fit - try 37
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 34 101
>>> 114 58 85
>>> 93 90 85
>>> 64 65 89
>>> 76 38 109
>>> INFO: Distances between consecutive points are 31 38 38 36
>>> WARN: Could not find satisfactory control point fit - try 38
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 35 99
>>> 117 60 86
>>> 93 91 85
>>> 60 67 87
>>> 69 38 106
>>> INFO: Distances between consecutive points are 31 39 41 36
>>> WARN: Could not find satisfactory control point fit - try 39
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 107 33 102
>>> 117 57 85
>>> 94 91 85
>>> 61 68 87
>>> 70 39 106
>>> INFO: Distances between consecutive points are 31 41 40 36
>>> WARN: Could not find satisfactory control point fit - try 40
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 34 99
>>> 117 61 86
>>> 91 91 84
>>> 60 65 87
>>> 70 39 107
>>> INFO: Distances between consecutive points are 33 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 41
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 42 107
>>> 112 65 86
>>> 84 91 84
>>> 64 59 86
>>> 78 40 111
>>> INFO: Distances between consecutive points are 34 38 38 34
>>> WARN: Could not find satisfactory control point fit - try 42
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 101 41 115
>>> 116 56 87
>>> 98 88 84
>>> 64 73 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 35 37 37 37
>>> WARN: Could not find satisfactory control point fit - try 43
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 35 100
>>> 114 62 84
>>> 88 90 84
>>> 62 60 87
>>> 73 42 112
>>> INFO: Distances between consecutive points are 35 38 40 33
>>> WARN: Could not find satisfactory control point fit - try 44
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 62 89
>>> 90 89 84
>>> 64 62 88
>>> 79 39 114
>>> INFO: Distances between consecutive points are 34 39 38 38
>>> WARN: Could not find satisfactory control point fit - try 45
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 117 60 87
>>> 96 90 84
>>> 64 72 87
>>> 72 38 97
>>> INFO: Distances between consecutive points are 34 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 46
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 62 89
>>> 89 89 83
>>> 64 60 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 34 40 39 36
>>> WARN: Could not find satisfactory control point fit - try 47
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 41 106
>>> 113 63 87
>>> 87 92 84
>>> 62 63 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 39 39 30
>>> WARN: Could not find satisfactory control point fit - try 48
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 41 107
>>> 113 64 87
>>> 87 91 84
>>> 62 61 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 34 38 39 28
>>> WARN: Could not find satisfactory control point fit - try 49
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 42 107
>>> 113 62 86
>>> 89 92 84
>>> 62 65 90
>>> 70 36 100
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 50
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 116 57 88
>>> 98 88 84
>>> 66 74 86
>>> 72 38 97
>>> INFO: Distances between consecutive points are 34 36 35 38
>>> WARN: Could not find satisfactory control point fit - try 51
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 61 88
>>> 77 38 106
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 52
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 39 108
>>> 117 60 85
>>> 96 90 83
>>> 64 72 87
>>> 72 38 97
>>> INFO: Distances between consecutive points are 35 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 53
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 112 67 85
>>> 82 90 84
>>> 65 57 84
>>> 78 39 112
>>> INFO: Distances between consecutive points are 34 38 37 36
>>> WARN: Could not find satisfactory control point fit - try 54
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 61 84
>>> 89 90 84
>>> 62 64 87
>>> 72 40 111
>>> INFO: Distances between consecutive points are 35 38 38 35
>>> WARN: Could not find satisfactory control point fit - try 55
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 130 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 42 107
>>> 118 63 89
>>> 93 90 84
>>> 62 69 88
>>> 71 37 97
>>> INFO: Distances between consecutive points are 31 37 38 34
>>> WARN: Could not find satisfactory control point fit - try 56
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 41 106
>>> 112 66 87
>>> 85 91 84
>>> 63 59 89
>>> 79 41 110
>>> INFO: Distances between consecutive points are 34 37 39 32
>>> WARN: Could not find satisfactory control point fit - try 57
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 66 86
>>> 85 92 84
>>> 63 60 87
>>> 77 38 106
>>> INFO: Distances between consecutive points are 35 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 58
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 40 106
>>> 114 63 89
>>> 89 92 85
>>> 62 66 91
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 38 38 32
>>> WARN: Could not find satisfactory control point fit - try 59
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 38 93
>>> 113 68 87
>>> 86 91 85
>>> 60 60 86
>>> 72 38 112
>>> INFO: Distances between consecutive points are 32 36 40 36
>>> WARN: Could not find satisfactory control point fit - try 60
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 40 107
>>> 113 64 89
>>> 87 91 85
>>> 62 61 90
>>> 78 41 110
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 61
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 128 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 43 107
>>> 118 61 88
>>> 95 89 84
>>> 63 72 88
>>> 71 37 97
>>> INFO: Distances between consecutive points are 29 36 36 37
>>> WARN: Could not find satisfactory control point fit - try 62
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 113 65 86
>>> 87 93 84
>>> 63 62 87
>>> 77 37 105
>>> INFO: Distances between consecutive points are 34 38 39 34
>>> WARN: Could not find satisfactory control point fit - try 63
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 60 85
>>> 92 88 83
>>> 60 68 85
>>> 72 35 102
>>> INFO: Distances between consecutive points are 35 40 38 39
>>> WARN: Could not find satisfactory control point fit - try 64
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 60 88
>>> 91 89 84
>>> 64 61 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 34 40 39 37
>>> WARN: Could not find satisfactory control point fit - try 65
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 63 86
>>> 89 88 83
>>> 62 63 85
>>> 75 35 108
>>> INFO: Distances between consecutive points are 37 40 37 38
>>> WARN: Could not find satisfactory control point fit - try 66
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 62 86
>>> 90 88 83
>>> 61 65 85
>>> 74 35 106
>>> INFO: Distances between consecutive points are 36 40 37 39
>>> WARN: Could not find satisfactory control point fit - try 67
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 32 101
>>> 114 59 83
>>> 90 91 84
>>> 62 62 87
>>> 72 40 111
>>> INFO: Distances between consecutive points are 35 40 40 34
>>> WARN: Could not find satisfactory control point fit - try 68
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 65 86
>>> 86 92 84
>>> 63 62 88
>>> 77 38 108
>>> INFO: Distances between consecutive points are 34 38 38 34
>>> WARN: Could not find satisfactory control point fit - try 69
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 127 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 40 100
>>> 120 66 87
>>> 89 90 84
>>> 59 68 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 33 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 70
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 127 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 40 100
>>> 120 66 87
>>> 89 90 84
>>> 59 68 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 33 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 71
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 113 64 86
>>> 89 93 83
>>> 64 66 90
>>> 71 36 100
>>> INFO: Distances between consecutive points are 34 38 37 32
>>> WARN: Could not find satisfactory control point fit - try 72
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 61 86
>>> 91 88 83
>>> 61 67 85
>>> 74 35 106
>>> INFO: Distances between consecutive points are 35 40 37 40
>>> WARN: Could not find satisfactory control point fit - try 73
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 45 114
>>> 115 62 88
>>> 89 91 84
>>> 64 63 87
>>> 75 34 104
>>> INFO: Distances between consecutive points are 35 39 38 35
>>> WARN: Could not find satisfactory control point fit - try 74
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 61 87
>>> 77 38 106
>>> INFO: Distances between consecutive points are 34 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 75
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 38 111
>>> 119 61 87
>>> 91 90 83
>>> 59 67 86
>>> 71 35 102
>>> INFO: Distances between consecutive points are 38 41 40 38
>>> WARN: Could not find satisfactory control point fit - try 76
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 112
>>> 116 59 85
>>> 92 88 82
>>> 63 66 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 39 38 36 40
>>> WARN: Could not find satisfactory control point fit - try 77
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 133 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 62 84
>>> 88 90 84
>>> 61 62 87
>>> 72 41 110
>>> INFO: Distances between consecutive points are 36 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 78
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 117 59 88
>>> 96 89 84
>>> 63 72 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 33 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 79
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 150 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 117 60 85
>>> 90 90 82
>>> 64 63 87
>>> 77 38 110
>>> INFO: Distances between consecutive points are 39 40 38 36
>>> WARN: Could not find satisfactory control point fit - try 80
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 111 68 85
>>> 82 90 84
>>> 64 59 85
>>> 79 40 110
>>> INFO: Distances between consecutive points are 34 36 36 35
>>> WARN: Could not find satisfactory control point fit - try 81
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 111 68 85
>>> 83 90 84
>>> 64 59 85
>>> 80 42 111
>>> INFO: Distances between consecutive points are 34 36 36 35
>>> WARN: Could not find satisfactory control point fit - try 82
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 33 102
>>> 114 58 83
>>> 91 90 84
>>> 63 65 87
>>> 73 42 113
>>> INFO: Distances between consecutive points are 34 39 38 36
>>> WARN: Could not find satisfactory control point fit - try 83
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 59 83
>>> 90 90 84
>>> 62 60 87
>>> 73 42 113
>>> INFO: Distances between consecutive points are 34 39 41 33
>>> WARN: Could not find satisfactory control point fit - try 84
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 112
>>> 116 58 85
>>> 93 88 82
>>> 63 67 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 39 38 37 41
>>> WARN: Could not find satisfactory control point fit - try 85
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 38 92
>>> 113 67 84
>>> 85 90 84
>>> 62 60 86
>>> 73 38 111
>>> INFO: Distances between consecutive points are 32 36 38 35
>>> WARN: Could not find satisfactory control point fit - try 86
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 62 86
>>> 90 88 83
>>> 61 64 85
>>> 75 35 108
>>> INFO: Distances between consecutive points are 36 40 38 40
>>> WARN: Could not find satisfactory control point fit - try 87
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 112
>>> 116 58 85
>>> 94 88 82
>>> 63 67 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 38 37 37 41
>>> WARN: Could not find satisfactory control point fit - try 88
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 119 60 85
>>> 93 88 83
>>> 62 69 85
>>> 76 37 104
>>> INFO: Distances between consecutive points are 34 38 36 40
>>> WARN: Could not find satisfactory control point fit - try 89
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 36 100
>>> 117 62 86
>>> 92 91 86
>>> 62 67 89
>>> 78 41 107
>>> INFO: Distances between consecutive points are 33 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 90
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 113
>>> 116 57 88
>>> 97 88 84
>>> 65 73 87
>>> 71 38 97
>>> INFO: Distances between consecutive points are 32 37 35 37
>>> WARN: Could not find satisfactory control point fit - try 91
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 119 60 85
>>> 95 88 83
>>> 62 70 85
>>> 75 36 105
>>> INFO: Distances between consecutive points are 34 37 38 42
>>> WARN: Could not find satisfactory control point fit - try 92
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 130 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 42 107
>>> 117 62 86
>>> 94 90 83
>>> 64 72 87
>>> 72 40 96
>>> INFO: Distances between consecutive points are 31 36 35 34
>>> WARN: Could not find satisfactory control point fit - try 93
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 45 114
>>> 114 62 88
>>> 90 89 84
>>> 64 65 87
>>> 74 33 101
>>> INFO: Distances between consecutive points are 35 36 36 36
>>> WARN: Could not find satisfactory control point fit - try 94
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 37 103
>>> 114 68 86
>>> 85 91 84
>>> 64 62 86
>>> 74 33 101
>>> INFO: Distances between consecutive points are 36 37 36 34
>>> WARN: Could not find satisfactory control point fit - try 95
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 112
>>> 116 59 85
>>> 93 89 81
>>> 63 68 84
>>> 76 35 106
>>> INFO: Distances between consecutive points are 39 38 37 42
>>> WARN: Could not find satisfactory control point fit - try 96
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 151 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 60 84
>>> 92 90 82
>>> 64 66 86
>>> 77 38 110
>>> INFO: Distances between consecutive points are 36 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 97
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 133 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 39 106
>>> 120 64 87
>>> 89 90 84
>>> 59 67 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 35 41 38 38
>>> WARN: Could not find satisfactory control point fit - try 98
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 35 99
>>> 114 61 81
>>> 89 91 83
>>> 62 61 86
>>> 74 40 112
>>> INFO: Distances between consecutive points are 36 39 40 36
>>> WARN: Could not find satisfactory control point fit - try 99
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 129 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 39 92
>>> 111 69 84
>>> 83 89 85
>>> 61 59 86
>>> 72 39 112
>>> INFO: Distances between consecutive points are 32 34 37 35
>>> WARN: Could not find satisfactory control point fit - try 100
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 2212.85 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk
>>> INFO: Rejected 839 streamlines for straying off mask
>>> INFO: Rejected 304 streamlines for reversing direction
>>> INFO: Rejected 45 streamlines as length outliers
>>> INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119)
>>> Processing pathway 8 of 18...
>>> Matching streamline ends
>>> INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119)
>>> INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12)
>>> INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3)
>>> INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11)
>>> INFO: Split streamlines into 23 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 67506 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 104 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 98 193 75
>>> 108 164 69
>>> 88 150 75
>>> 73 168 69
>>> 83 193 81
>>> INFO: Distances between consecutive points are 31 25 24 29
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 57.864 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk
>>> INFO: Rejected 83 streamlines for straying off mask
>>> INFO: Rejected 6 streamlines for reversing direction
>>> INFO: Rejected 47 streamlines as length outliers
>>> INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92)
>>> Processing pathway 9 of 18...
>>> Matching streamline ends
>>> INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94)
>>> INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13)
>>> INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5)
>>> INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6)
>>> INFO: Split streamlines into 17 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 42884 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 72 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 107 187 71
>>> 113 167 73
>>> 111 158 74
>>> 107 138 80
>>> 95 113 81
>>> INFO: Distances between consecutive points are 21 9 21 28
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 9.28 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk
>>> INFO: Rejected 109 streamlines for straying off mask
>>> INFO: Rejected 20 streamlines for reversing direction
>>> INFO: Rejected 33 streamlines as length outliers
>>> INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93)
>>> Processing pathway 10 of 18...
>>> Matching streamline ends
>>> INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92)
>>> INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12)
>>> INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5)
>>> INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6)
>>> INFO: Split streamlines into 18 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 38520 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 81 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 69 194 85
>>> 71 186 82
>>> 68 157 78
>>> 81 115 78
>>> 82 111 78
>>> INFO: Distances between consecutive points are 9 29 44 4
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.144 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk
>>> INFO: Rejected 18 streamlines for straying off mask
>>> INFO: Rejected 3 streamlines for reversing direction
>>> INFO: Rejected 6 streamlines as length outliers
>>> INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134)
>>> Processing pathway 11 of 18...
>>> Matching streamline ends
>>> INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134)
>>> INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7)
>>> INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2)
>>> INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8)
>>> INFO: Split streamlines into 22 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 20097 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 93 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 101 74 96
>>> 101 81 101
>>> 96 112 105
>>> 97 139 100
>>> 97 163 79
>>> INFO: Distances between consecutive points are 9 32 27 32
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.013 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk
>>> INFO: Rejected 43 streamlines for straying off mask
>>> INFO: Rejected 9 streamlines for reversing direction
>>> INFO: Rejected 26 streamlines as length outliers
>>> INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124)
>>> Processing pathway 12 of 18...
>>> Matching streamline ends
>>> INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124)
>>> INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9)
>>> INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2)
>>> INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7)
>>> INFO: Split streamlines into 22 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 18871 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 81 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 81 82 98
>>> 81 98 104
>>> 83 128 104
>>> 82 160 90
>>> 86 164 93
>>> INFO: Distances between consecutive points are 17 30 35 6
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 6.164 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk
>>> INFO: Rejected 52 streamlines for straying off mask
>>> INFO: Rejected 62 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95)
>>> Processing pathway 13 of 18...
>>> Matching streamline ends
>>> INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92)
>>> INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12)
>>> INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5)
>>> INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11)
>>> INFO: Split streamlines into 12 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 17882 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 65 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 104 74 79
>>> 105 85 70
>>> 114 106 49
>>> 117 118 44
>>> 118 133 39
>>> INFO: Distances between consecutive points are 14 31 13 16
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 4.921 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk
>>> INFO: Rejected 491 streamlines for straying off mask
>>> INFO: Rejected 76 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99)
>>> Processing pathway 14 of 18...
>>> Matching streamline ends
>>> INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99)
>>> INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8)
>>> INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2)
>>> INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4)
>>> INFO: Split streamlines into 13 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 15900 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 58 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 74 76 85
>>> 65 107 47
>>> 61 115 43
>>> 61 119 42
>>> 64 128 39
>>> INFO: Distances between consecutive points are 50 10 4 10
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 3.905 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk
>>> INFO: Rejected 181 streamlines for straying off mask
>>> INFO: Rejected 652 streamlines for reversing direction
>>> INFO: Rejected 40 streamlines as length outliers
>>> INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102)
>>> Processing pathway 15 of 18...
>>> Matching streamline ends
>>> INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103)
>>> INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11)
>>> INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3)
>>> INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12)
>>> INFO: Split streamlines into 14 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 50360 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 67 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 150 131 96
>>> 134 121 97
>>> 128 98 103
>>> 131 85 104
>>> 146 86 115
>>> INFO: Distances between consecutive points are 19 25 13 19
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 7.66 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk
>>> INFO: Rejected 311 streamlines for straying off mask
>>> INFO: Rejected 458 streamlines for reversing direction
>>> INFO: Rejected 95 streamlines as length outliers
>>> INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98)
>>> Processing pathway 16 of 18...
>>> Matching streamline ends
>>> INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101)
>>> INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12)
>>> INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3)
>>> INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11)
>>> INFO: Split streamlines into 15 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 65106 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 75 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 31 133 95
>>> 50 121 100
>>> 53 100 105
>>> 53 83 102
>>> 42 73 113
>>> INFO: Distances between consecutive points are 23 22 17 18
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 16.605 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk
>>> INFO: Rejected 353 streamlines for straying off mask
>>> INFO: Rejected 59 streamlines for reversing direction
>>> INFO: Rejected 77 streamlines as length outliers
>>> INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133)
>>> Processing pathway 17 of 18...
>>> Matching streamline ends
>>> INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133)
>>> INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10)
>>> INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3)
>>> INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9)
>>> INFO: Split streamlines into 23 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 45630 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 94 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 148 135 97
>>> 130 120 98
>>> 125 87 98
>>> 135 80 70
>>> 149 73 70
>>> INFO: Distances between consecutive points are 23 33 31 16
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.592 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk
>>> INFO: Rejected 61 streamlines for straying off mask
>>> INFO: Rejected 12 streamlines for reversing direction
>>> INFO: Rejected 44 streamlines as length outliers
>>> INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132)
>>> Processing pathway 18 of 18...
>>> Matching streamline ends
>>> INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132)
>>> INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15)
>>> INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3)
>>> INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8)
>>> INFO: Split streamlines into 24 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 31157 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 95 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 33 139 102
>>> 52 127 99
>>> 55 93 101
>>> 46 81 79
>>> 29 71 78
>>> INFO: Distances between consecutive points are 23 34 27 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.246 sec.
>>> dmri_train done
>>> #-------------------------------------
>>> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 08:19:08 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 6936780 58966460 0 372776 5055680
>>> -/+ buffers/cache: 1508324 64394916
>>> Swap: 67032060 1816772 65215288
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
>>> WARN: Running FSL's bedbost locally - this might take a while
>>> WARN: It is recommended to run this step on a cluster
>>> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log
>>> Tue Aug 6 01:57:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5980064 59923176 0 83692 4482000
>>> -/+ buffers/cache: 1414372 64488868
>>> Swap: 67032060 1824148 65207912
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5980856 59922384 0 83692 4482000
>>> -/+ buffers/cache: 1415164 64488076
>>> Swap: 67032060 1824148 65207912
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 01:57:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:00:22 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5982784 59920456 0 83932 4482156
>>> -/+ buffers/cache: 1416696 64486544
>>> Swap: 67032060 1824120 65207940
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984932 59918308 0 83932 4482156
>>> -/+ buffers/cache: 1418844 64484396
>>> Swap: 67032060 1824120 65207940
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:00:32 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5983252 59919988 0 83956 4482156
>>> -/+ buffers/cache: 1417140 64486100
>>> Swap: 67032060 1824120 65207940
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984752 59918488 0 83956 4482156
>>> -/+ buffers/cache: 1418640 64484600
>>> Swap: 67032060 1824120 65207940
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:00:33 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:01:42 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984044 59919196 0 84144 4482192
>>> -/+ buffers/cache: 1417708 64485532
>>> Swap: 67032060 1824104 65207956
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5987064 59916176 0 84144 4482192
>>> -/+ buffers/cache: 1420728 64482512
>>> Swap: 67032060 1824104 65207956
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:01:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5985300 59917940 0 84160 4482188
>>> -/+ buffers/cache: 1418952 64484288
>>> Swap: 67032060 1824104 65207956
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5986324 59916916 0 84160 4482188
>>> -/+ buffers/cache: 1419976 64483264
>>> Swap: 67032060 1824104 65207956
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:01:56 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:02:48 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5984700 59918540 0 84336 4482212
>>> -/+ buffers/cache: 1418152 64485088
>>> Swap: 67032060 1824076 65207984
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5987120 59916120 0 84336 4482216
>>> -/+ buffers/cache: 1420568 64482672
>>> Swap: 67032060 1824076 65207984
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:02:56 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5986420 59916820 0 84348 4482212
>>> -/+ buffers/cache: 1419860 64483380
>>> Swap: 67032060 1824076 65207984
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5988520 59914720 0 84348 4482212
>>> -/+ buffers/cache: 1421960 64481280
>>> Swap: 67032060 1824076 65207984
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:02:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
>>> No such file or directory
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> Input does not exist or is not in a supported format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
>>> ERROR: Transform file should be an eddy_correct log file or a .mat file
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
>>> #-------------------------------------
>>> #@# Masks Tue Aug 6 02:04:33 BST 2013
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> Binarizing based on matching values
>>> nMatch 5
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> binval 1
>>> binvalnot 0
>>> Found 467858 values in range
>>> Counting number of voxels
>>> Found 467858 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> Binarizing based on matching values
>>> nMatch 8
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> 5 28
>>> 6 60
>>> 7 16
>>> binval 1
>>> binvalnot 0
>>> Found 494467 values in range
>>> Counting number of voxels
>>> Found 494467 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> Binarizing based on matching values
>>> nMatch 2
>>> 0 4
>>> 1 43
>>> binval 0
>>> binvalnot 1
>>> Found 7382 values in range
>>> Counting number of voxels
>>> Found 7382 voxels in final mask
>>> mri_binarize done
>>> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> subject 02ST
>>> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> useribbon 0
>>> baseoffset 0
>>> labeling wm
>>> labeling hypo-intensities as wm
>>> dmaxctx 2.000000
>>> RipUnknown 0
>>>
>>> Reading lh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>>>
>>> Reading lh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>>>
>>> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>>
>>> Reading rh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>>>
>>> Reading rh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>>>
>>> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>> Have color table for lh white annotation
>>> Have color table for rh white annotation
>>> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
>>> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>>>
>>> Building hash of lh white
>>>
>>> Building hash of lh pial
>>>
>>> Building hash of rh white
>>>
>>> Building hash of rh pial
>>>
>>> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
>>> ASeg Vox2RAS: -----------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> -------------------------
>>>
>>> Labeling Slice
>>> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
>>> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
>>> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
>>> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
>>> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
>>> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
>>> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
>>> 140 141 142
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:09:35 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5990572 59912668 0 85028 4482988
>>> -/+ buffers/cache: 1422556 64480684
>>> Swap: 67032060 1824048 65208012
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5992728 59910512 0 85028 4482988
>>> -/+ buffers/cache: 1424712 64478528
>>> Swap: 67032060 1824048 65208012
>>>
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 02:11:25 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5989716 59913524 0 85072 4482980
>>> -/+ buffers/cache: 1421664 64481576
>>> Swap: 67032060 1824048 65208012
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>>
>>>
>>> New invocation of trac-preproc
>>>
>>>
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 5991732 59911508 0 85072 4482980
>>> -/+ buffers/cache: 1423680 64479560
>>> Swap: 67032060 1824048 65208012
>>>
>>> #-------------------------------------
>>> /usr/local/freesurfer/bin/trac-preproc
>>> #-------------------------------------
>>> #@# Image corrections Tue Aug 6 02:11:26 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, 1)
>>> k_ras = (-0, -1, -0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
>>> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> INFO: input image orientation is LSP
>>> INFO: input image determinant is -12.5224
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
>>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
>>> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
>>> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
>>> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
>>> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
>>> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>>>
>>> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>>> fslroi <input> <output> <tmin> <tsize>
>>>
>>> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
>>> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>
>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>
>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>> #-------------------------------------
>>> #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
>>> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
>>> LoadVol 0
>>> ZeroCRAS 0
>>> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
>>> Diagnostic Level -1
>>> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
>>> INFO: target does not conform to COR format, so I'm going to
>>> reslice to COR. This will not affect the final registration.
>>> Ttarg: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
>>> Tmov: --------------------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> mkheaderreg = 1, float2int = 0
>>> Computing reg from header (and possibly input matrix)
>>> ---- Input registration matrix (computed) --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> ---------------------------------------
>>> ---- Input registration matrix --------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 1.000 0.000 0.000;
>>> 0.000 0.000 1.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> Determinant 1
>>> subject = subject-unknown
>>> RegMat ---------------------------
>>> 1.000 0.000 0.000 0.000;
>>> 0.000 0.000 -1.000 0.000;
>>> 0.000 1.000 0.000 1.000;
>>> 0.000 0.000 0.000 1.000;
>>> FSLOUTPUTTYPE NIFTI_GZ
>>> tkreg2FSL: mov det = -1, ref det = -1
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>> Cannot read input-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>> Cannot read concat-matrix
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>> Cannot read input-matrix
>>> #-------------------------------------
>>> #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
>>> #-------------------------------------
>>> #@# Masks Tue Aug 6 02:15:07 BST 2013
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>>> Binarizing based on matching values
>>> nMatch 5
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> binval 1
>>> binvalnot 0
>>> Found 467858 values in range
>>> Counting number of voxels
>>> Found 467858 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>>> Binarizing based on matching values
>>> nMatch 8
>>> 0 2
>>> 1 7
>>> 2 41
>>> 3 46
>>> 4 77
>>> 5 28
>>> 6 60
>>> 7 16
>>> binval 1
>>> binvalnot 0
>>> Found 494467 values in range
>>> Counting number of voxels
>>> Found 494467 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>>> Binarizing based on matching values
>>> nMatch 2
>>> 0 4
>>> 1 43
>>> binval 0
>>> binvalnot 1
>>> Found 7382 values in range
>>> Counting number of voxels
>>> Found 7382 voxels in final mask
>>> mri_binarize done
>>> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> subject 02ST
>>> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> useribbon 0
>>> baseoffset 0
>>> labeling wm
>>> labeling hypo-intensities as wm
>>> dmaxctx 2.000000
>>> RipUnknown 0
>>>
>>> Reading lh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>>>
>>> Reading lh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>>>
>>> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>>
>>> Reading rh white surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>>>
>>> Reading rh pial surface
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>>>
>>> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
>>> reading colortable from annotation file...
>>> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>>> Have color table for lh white annotation
>>> Have color table for rh white annotation
>>> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
>>> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>>>
>>> Building hash of lh white
>>>
>>> Building hash of lh pial
>>>
>>> Building hash of rh white
>>>
>>> Building hash of rh pial
>>>
>>> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
>>> ASeg Vox2RAS: -----------
>>> -1.000 0.000 0.000 128.000;
>>> 0.000 0.000 1.000 -128.000;
>>> 0.000 -1.000 0.000 128.000;
>>> 0.000 0.000 0.000 1.000;
>>> -------------------------
>>>
>>> Labeling Slice
>>> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
>>> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
>>> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
>>> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
>>> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
>>> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
>>> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
>>> 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
>>> 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
>>> 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
>>> 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
>>> 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
>>> 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358
>>> Used brute-force search on 0 voxels
>>> Fixing Parahip LH WM
>>> Found 6 clusters
>>> 0 k 4.000000
>>> 1 k 1038.000000
>>> 2 k 3.000000
>>> 3 k 1.000000
>>> 4 k 2.000000
>>> 5 k 1.000000
>>> Fixing Parahip RH WM
>>> Found 5 clusters
>>> 0 k 1.000000
>>> 1 k 12.000000
>>> 2 k 1.000000
>>> 3 k 1.000000
>>> 4 k 1038.000000
>>> Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>>> Binarizing based on threshold
>>> min 1000
>>> max 2999
>>> binval 1
>>> binvalnot 0
>>> Found 458567 values in range
>>> Counting number of voxels
>>> Found 458567 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>>> Binarizing based on threshold
>>> min 1000
>>> max 4999
>>> binval 1
>>> binvalnot 0
>>> Found 737102 values in range
>>> Counting number of voxels
>>> Found 737102 voxels in final mask
>>> mri_binarize done
>>> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>>
>>> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>>
>>> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
>>> frame 0
>>> nErode3d 0
>>> nErode2d 0
>>> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>>> Binarizing based on matching values
>>> nMatch 1
>>> 0 16
>>> binval 1
>>> binvalnot 0
>>> Found 19373 values in range
>>> Counting number of voxels
>>> Found 19373 voxels in final mask
>>> mri_binarize done
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz...
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
>>> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
>>> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>>> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz...
>>> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
>>> i_ras = (-1, 0, 0)
>>> j_ras = (0, 0, -1)
>>> k_ras = (0, 1, 0)
>>> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz...
>>> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> INFO: input image orientation is LIA
>>> INFO: input image determinant is -1
>>> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
>>> fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt
>>> #-------------------------------------
>>> #@# Tensor fit Tue Aug 6 02:18:26 BST 2013
>>> dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit
>>> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask
>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>> #-------------------------------------
>>> #@# Priors Tue Aug 6 02:18:26 BST 2013
>>> /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_P!
P!
> _!
>> roi2.flt
>> .nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>>>
>>>
>>> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP..flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni!
/!
> lh!
>> .ccg_PP_
>> roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>>> sysname Linux
>>> hostname wmen-dsoto3
>>> machine x86_64
>>> user dsoto
>>> Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni
>>> Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt
>>> Training subject directory list: /tmp/subj33.02ST.15264.txt
>>> Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk
>>> Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz
>>> Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0
>>> Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz
>>> Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
>>> FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> Number of control points for initial spline: 5
>>> Exclude previously chosen center streamlines: 0
>>> Use truncated streamlines: 0
>>> Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
>>> Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk
>>> INFO: Rejected 572 streamlines for straying off mask
>>> INFO: Rejected 89 streamlines for reversing direction
>>> INFO: Rejected 33 streamlines as length outliers
>>> INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132)
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz
>>> Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz
>>> Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz
>>> Processing pathway 1 of 18...
>>> Matching streamline ends
>>> INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132)
>>> INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12)
>>> INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7)
>>> INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6)
>>> INFO: Split streamlines into 26 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 39274 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 111 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 95 94 26
>>> 102 105 55
>>> 113 110 78
>>> 115 106 116
>>> 115 107 138
>>> INFO: Distances between consecutive points are 32 26 38 22
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 17.678 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk
>>> INFO: Rejected 441 streamlines for straying off mask
>>> INFO: Rejected 92 streamlines for reversing direction
>>> INFO: Rejected 30 streamlines as length outliers
>>> INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138)
>>> Processing pathway 2 of 18...
>>> Matching streamline ends
>>> INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138)
>>> INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14)
>>> INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7)
>>> INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 46198 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 111 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 81 92 30
>>> 77 104 62
>>> 65 110 82
>>> 66 107 112
>>> 71 110 143
>>> INFO: Distances between consecutive points are 34 24 30 32
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 19.176 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk
>>> INFO: Rejected 19 streamlines for straying off mask
>>> INFO: Rejected 26 streamlines for reversing direction
>>> INFO: Rejected 24 streamlines as length outliers
>>> INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142)
>>> Processing pathway 3 of 18...
>>> Matching streamline ends
>>> INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142)
>>> INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9)
>>> INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5)
>>> INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 39318 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 108 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 130 139 35
>>> 134 104 58
>>> 130 83 68
>>> 116 50 72
>>> 109 35 60
>>> INFO: Distances between consecutive points are 42 24 36 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.382 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk
>>> INFO: Rejected 18 streamlines for straying off mask
>>> INFO: Rejected 20 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132)
>>> Processing pathway 4 of 18...
>>> Matching streamline ends
>>> INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133)
>>> INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9)
>>> INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4)
>>> INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11)
>>> INFO: Split streamlines into 25 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 28709 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 109 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 44 144 40
>>> 48 100 60
>>> 50 84 67
>>> 68 53 76
>>> 76 41 64
>>> INFO: Distances between consecutive points are 48 18 37 19
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 11.356 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk
>>> INFO: Rejected 67 streamlines for straying off mask
>>> INFO: Rejected 35 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104)
>>> Processing pathway 5 of 18...
>>> Matching streamline ends
>>> INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104)
>>> INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5)
>>> INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3)
>>> INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5)
>>> INFO: Split streamlines into 10 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 23343 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 71 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 124 144 40
>>> 128 128 47
>>> 125 126 59
>>> 109 151 62
>>> 107 168 58
>>> INFO: Distances between consecutive points are 18 13 30 18
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 6.691 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk
>>> INFO: Rejected 107 streamlines for straying off mask
>>> INFO: Rejected 120 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113)
>>> Processing pathway 6 of 18...
>>> Matching streamline ends
>>> INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113)
>>> INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6)
>>> INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3)
>>> INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5)
>>> INFO: Split streamlines into 10 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 26122 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 71 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 52 145 44
>>> 53 129 49
>>> 59 133 59
>>> 73 153 61
>>> 76 175 55
>>> INFO: Distances between consecutive points are 17 12 24 23
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.203 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk
>>> INFO: Rejected 2655 streamlines for straying off mask
>>> INFO: Rejected 231 streamlines for reversing direction
>>> INFO: Rejected 155 streamlines as length outliers
>>> INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162)
>>> Processing pathway 7 of 18...
>>> Matching streamline ends
>>> INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166)
>>> INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16)
>>> INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3)
>>> INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17)
>>> INFO: Split streamlines into 37 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 59210 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 107
>>> 116 58 86
>>> 91 91 84
>>> 62 64 87
>>> 72 38 111
>>> INFO: Distances between consecutive points are 33 41 40 37
>>> WARN: Could not find satisfactory control point fit - try 1
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 108
>>> 116 58 86
>>> 90 91 84
>>> 60 62 86
>>> 72 38 112
>>> INFO: Distances between consecutive points are 34 42 42 37
>>> WARN: Could not find satisfactory control point fit - try 2
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 61 86
>>> 89 91 84
>>> 61 60 86
>>> 72 39 112
>>> INFO: Distances between consecutive points are 35 40 42 35
>>> WARN: Could not find satisfactory control point fit - try 3
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 147 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 112
>>> 116 55 86
>>> 93 90 84
>>> 61 64 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 35 42 41 38
>>> WARN: Could not find satisfactory control point fit - try 4
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 112
>>> 116 56 86
>>> 93 90 84
>>> 61 65 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 35 41 41 38
>>> WARN: Could not find satisfactory control point fit - try 5
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 39 107
>>> 115 57 85
>>> 91 90 84
>>> 61 62 87
>>> 72 38 112
>>> INFO: Distances between consecutive points are 34 41 41 36
>>> WARN: Could not find satisfactory control point fit - try 6
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 107
>>> 115 60 86
>>> 88 90 85
>>> 61 59 86
>>> 72 39 115
>>> INFO: Distances between consecutive points are 34 40 41 37
>>> WARN: Could not find satisfactory control point fit - try 7
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 148 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 91 90 83
>>> 62 64 87
>>> 76 38 112
>>> INFO: Distances between consecutive points are 35 39 39 39
>>> WARN: Could not find satisfactory control point fit - try 8
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 39 103
>>> 114 61 85
>>> 89 90 84
>>> 61 63 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 32 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 9
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 34 102
>>> 117 57 85
>>> 92 91 84
>>> 60 63 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 31 42 43 36
>>> WARN: Could not find satisfactory control point fit - try 10
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 57 85
>>> 93 91 84
>>> 60 65 87
>>> 72 43 113
>>> INFO: Distances between consecutive points are 32 42 42 36
>>> WARN: Could not find satisfactory control point fit - try 11
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 57 85
>>> 91 90 84
>>> 61 63 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 33 41 40 35
>>> WARN: Could not find satisfactory control point fit - try 12
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 59 85
>>> 91 91 84
>>> 60 65 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 33 41 41 36
>>> WARN: Could not find satisfactory control point fit - try 13
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 112 67 85
>>> 83 91 84
>>> 64 57 86
>>> 77 39 111
>>> INFO: Distances between consecutive points are 36 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 14
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 33 102
>>> 115 59 84
>>> 90 91 83
>>> 62 62 87
>>> 73 39 111
>>> INFO: Distances between consecutive points are 35 41 41 35
>>> WARN: Could not find satisfactory control point fit - try 15
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 39 108
>>> 118 64 86
>>> 88 90 83
>>> 63 61 88
>>> 77 39 114
>>> INFO: Distances between consecutive points are 37 40 39 37
>>> WARN: Could not find satisfactory control point fit - try 16
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 150 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 34 104
>>> 117 60 88
>>> 92 90 83
>>> 60 66 92
>>> 79 41 103
>>> INFO: Distances between consecutive points are 36 39 41 33
>>> WARN: Could not find satisfactory control point fit - try 17
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 91 90 83
>>> 62 63 87
>>> 77 37 110
>>> INFO: Distances between consecutive points are 35 39 40 38
>>> WARN: Could not find satisfactory control point fit - try 18
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 148 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 66 85
>>> 84 91 84
>>> 64 58 86
>>> 78 39 112
>>> INFO: Distances between consecutive points are 35 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 19
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 60 88
>>> 80 41 111
>>> INFO: Distances between consecutive points are 34 38 40 34
>>> WARN: Could not find satisfactory control point fit - try 20
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 33 102
>>> 117 57 85
>>> 93 91 84
>>> 60 64 87
>>> 71 40 111
>>> INFO: Distances between consecutive points are 32 42 43 36
>>> WARN: Could not find satisfactory control point fit - try 21
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 37 105
>>> 117 62 89
>>> 91 90 83
>>> 60 67 92
>>> 77 41 103
>>> INFO: Distances between consecutive points are 35 39 40 33
>>> WARN: Could not find satisfactory control point fit - try 22
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 149 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 61 86
>>> 90 90 83
>>> 63 63 87
>>> 78 38 112
>>> INFO: Distances between consecutive points are 35 40 38 38
>>> WARN: Could not find satisfactory control point fit - try 23
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 60 85
>>> 89 90 85
>>> 60 61 87
>>> 72 42 113
>>> INFO: Distances between consecutive points are 35 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 24
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 40 105
>>> 115 61 87
>>> 88 92 85
>>> 62 62 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 41 40 29
>>> WARN: Could not find satisfactory control point fit - try 25
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 117 59 88
>>> 96 88 84
>>> 63 71 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 36 36 37 35
>>> WARN: Could not find satisfactory control point fit - try 26
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 107
>>> 115 58 85
>>> 88 90 85
>>> 60 61 87
>>> 71 41 113
>>> INFO: Distances between consecutive points are 34 42 40 35
>>> WARN: Could not find satisfactory control point fit - try 27
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 107
>>> 115 60 87
>>> 90 91 85
>>> 62 63 91
>>> 78 41 110
>>> INFO: Distances between consecutive points are 35 40 40 33
>>> WARN: Could not find satisfactory control point fit - try 28
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 152 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 43 108
>>> 113 62 86
>>> 88 93 84
>>> 63 62 89
>>> 80 42 112
>>> INFO: Distances between consecutive points are 34 40 40 35
>>> WARN: Could not find satisfactory control point fit - try 29
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 108
>>> 114 62 88
>>> 88 91 85
>>> 62 61 90
>>> 78 42 110
>>> INFO: Distances between consecutive points are 35 39 40 32
>>> WARN: Could not find satisfactory control point fit - try 30
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 66 85
>>> 85 92 84
>>> 63 59 87
>>> 75 39 107
>>> INFO: Distances between consecutive points are 35 38 40 31
>>> WARN: Could not find satisfactory control point fit - try 31
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 112 67 85
>>> 83 91 84
>>> 64 57 86
>>> 77 39 110
>>> INFO: Distances between consecutive points are 35 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 32
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 42 112
>>> 118 61 89
>>> 91 89 84
>>> 62 63 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 33 39 39 39
>>> WARN: Could not find satisfactory control point fit - try 33
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 35 99
>>> 117 60 86
>>> 92 91 84
>>> 60 66 87
>>> 70 39 106
>>> INFO: Distances between consecutive points are 32 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 34
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 39 100
>>> 114 63 84
>>> 86 90 85
>>> 61 60 87
>>> 72 39 115
>>> INFO: Distances between consecutive points are 33 39 39 37
>>> WARN: Could not find satisfactory control point fit - try 35
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 147 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 34 105
>>> 117 60 88
>>> 92 90 83
>>> 60 68 92
>>> 79 41 104
>>> INFO: Distances between consecutive points are 36 39 40 35
>>> WARN: Could not find satisfactory control point fit - try 36
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 36 104
>>> 117 62 89
>>> 90 91 83
>>> 59 65 92
>>> 79 42 103
>>> INFO: Distances between consecutive points are 36 40 41 32
>>> WARN: Could not find satisfactory control point fit - try 37
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 34 101
>>> 114 58 85
>>> 93 90 85
>>> 64 65 89
>>> 76 38 109
>>> INFO: Distances between consecutive points are 31 38 38 36
>>> WARN: Could not find satisfactory control point fit - try 38
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 35 99
>>> 117 60 86
>>> 93 91 85
>>> 60 67 87
>>> 69 38 106
>>> INFO: Distances between consecutive points are 31 39 41 36
>>> WARN: Could not find satisfactory control point fit - try 39
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 107 33 102
>>> 117 57 85
>>> 94 91 85
>>> 61 68 87
>>> 70 39 106
>>> INFO: Distances between consecutive points are 31 41 40 36
>>> WARN: Could not find satisfactory control point fit - try 40
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 34 99
>>> 117 61 86
>>> 91 91 84
>>> 60 65 87
>>> 70 39 107
>>> INFO: Distances between consecutive points are 33 40 41 34
>>> WARN: Could not find satisfactory control point fit - try 41
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 145 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 42 107
>>> 112 65 86
>>> 84 91 84
>>> 64 59 86
>>> 78 40 111
>>> INFO: Distances between consecutive points are 34 38 38 34
>>> WARN: Could not find satisfactory control point fit - try 42
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 101 41 115
>>> 116 56 87
>>> 98 88 84
>>> 64 73 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 35 37 37 37
>>> WARN: Could not find satisfactory control point fit - try 43
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 35 100
>>> 114 62 84
>>> 88 90 84
>>> 62 60 87
>>> 73 42 112
>>> INFO: Distances between consecutive points are 35 38 40 33
>>> WARN: Could not find satisfactory control point fit - try 44
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 62 89
>>> 90 89 84
>>> 64 62 88
>>> 79 39 114
>>> INFO: Distances between consecutive points are 34 39 38 38
>>> WARN: Could not find satisfactory control point fit - try 45
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 135 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 117 60 87
>>> 96 90 84
>>> 64 72 87
>>> 72 38 97
>>> INFO: Distances between consecutive points are 34 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 46
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 62 89
>>> 89 89 83
>>> 64 60 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 34 40 39 36
>>> WARN: Could not find satisfactory control point fit - try 47
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 41 106
>>> 113 63 87
>>> 87 92 84
>>> 62 63 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 39 39 30
>>> WARN: Could not find satisfactory control point fit - try 48
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 41 107
>>> 113 64 87
>>> 87 91 84
>>> 62 61 89
>>> 70 36 100
>>> INFO: Distances between consecutive points are 34 38 39 28
>>> WARN: Could not find satisfactory control point fit - try 49
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 42 107
>>> 113 62 86
>>> 89 92 84
>>> 62 65 90
>>> 70 36 100
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 50
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 116 57 88
>>> 98 88 84
>>> 66 74 86
>>> 72 38 97
>>> INFO: Distances between consecutive points are 34 36 35 38
>>> WARN: Could not find satisfactory control point fit - try 51
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 61 88
>>> 77 38 106
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 52
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 39 108
>>> 117 60 85
>>> 96 90 83
>>> 64 72 87
>>> 72 38 97
>>> INFO: Distances between consecutive points are 35 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 53
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 112 67 85
>>> 82 90 84
>>> 65 57 84
>>> 78 39 112
>>> INFO: Distances between consecutive points are 34 38 37 36
>>> WARN: Could not find satisfactory control point fit - try 54
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 61 84
>>> 89 90 84
>>> 62 64 87
>>> 72 40 111
>>> INFO: Distances between consecutive points are 35 38 38 35
>>> WARN: Could not find satisfactory control point fit - try 55
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 130 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 42 107
>>> 118 63 89
>>> 93 90 84
>>> 62 69 88
>>> 71 37 97
>>> INFO: Distances between consecutive points are 31 37 38 34
>>> WARN: Could not find satisfactory control point fit - try 56
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 41 106
>>> 112 66 87
>>> 85 91 84
>>> 63 59 89
>>> 79 41 110
>>> INFO: Distances between consecutive points are 34 37 39 32
>>> WARN: Could not find satisfactory control point fit - try 57
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 66 86
>>> 85 92 84
>>> 63 60 87
>>> 77 38 106
>>> INFO: Distances between consecutive points are 35 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 58
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 40 106
>>> 114 63 89
>>> 89 92 85
>>> 62 66 91
>>> 70 36 100
>>> INFO: Distances between consecutive points are 33 38 38 32
>>> WARN: Could not find satisfactory control point fit - try 59
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 38 93
>>> 113 68 87
>>> 86 91 85
>>> 60 60 86
>>> 72 38 112
>>> INFO: Distances between consecutive points are 32 36 40 36
>>> WARN: Could not find satisfactory control point fit - try 60
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 40 107
>>> 113 64 89
>>> 87 91 85
>>> 62 61 90
>>> 78 41 110
>>> INFO: Distances between consecutive points are 34 38 39 32
>>> WARN: Could not find satisfactory control point fit - try 61
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 128 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 43 107
>>> 118 61 88
>>> 95 89 84
>>> 63 72 88
>>> 71 37 97
>>> INFO: Distances between consecutive points are 29 36 36 37
>>> WARN: Could not find satisfactory control point fit - try 62
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 113 65 86
>>> 87 93 84
>>> 63 62 87
>>> 77 37 105
>>> INFO: Distances between consecutive points are 34 38 39 34
>>> WARN: Could not find satisfactory control point fit - try 63
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 60 85
>>> 92 88 83
>>> 60 68 85
>>> 72 35 102
>>> INFO: Distances between consecutive points are 35 40 38 39
>>> WARN: Could not find satisfactory control point fit - try 64
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 118 60 88
>>> 91 89 84
>>> 64 61 88
>>> 78 39 114
>>> INFO: Distances between consecutive points are 34 40 39 37
>>> WARN: Could not find satisfactory control point fit - try 65
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 63 86
>>> 89 88 83
>>> 62 63 85
>>> 75 35 108
>>> INFO: Distances between consecutive points are 37 40 37 38
>>> WARN: Could not find satisfactory control point fit - try 66
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 62 86
>>> 90 88 83
>>> 61 65 85
>>> 74 35 106
>>> INFO: Distances between consecutive points are 36 40 37 39
>>> WARN: Could not find satisfactory control point fit - try 67
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 32 101
>>> 114 59 83
>>> 90 91 84
>>> 62 62 87
>>> 72 40 111
>>> INFO: Distances between consecutive points are 35 40 40 34
>>> WARN: Could not find satisfactory control point fit - try 68
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 42 107
>>> 112 65 86
>>> 86 92 84
>>> 63 62 88
>>> 77 38 108
>>> INFO: Distances between consecutive points are 34 38 38 34
>>> WARN: Could not find satisfactory control point fit - try 69
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 127 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 40 100
>>> 120 66 87
>>> 89 90 84
>>> 59 68 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 33 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 70
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 127 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 40 100
>>> 120 66 87
>>> 89 90 84
>>> 59 68 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 33 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 71
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 43 107
>>> 113 64 86
>>> 89 93 83
>>> 64 66 90
>>> 71 36 100
>>> INFO: Distances between consecutive points are 34 38 37 32
>>> WARN: Could not find satisfactory control point fit - try 72
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 61 86
>>> 91 88 83
>>> 61 67 85
>>> 74 35 106
>>> INFO: Distances between consecutive points are 35 40 37 40
>>> WARN: Could not find satisfactory control point fit - try 73
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 45 114
>>> 115 62 88
>>> 89 91 84
>>> 64 63 87
>>> 75 34 104
>>> INFO: Distances between consecutive points are 35 39 38 35
>>> WARN: Could not find satisfactory control point fit - try 74
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 43 107
>>> 113 65 86
>>> 86 92 84
>>> 63 61 87
>>> 77 38 106
>>> INFO: Distances between consecutive points are 34 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 75
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 38 111
>>> 119 61 87
>>> 91 90 83
>>> 59 67 86
>>> 71 35 102
>>> INFO: Distances between consecutive points are 38 41 40 38
>>> WARN: Could not find satisfactory control point fit - try 76
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 142 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 112
>>> 116 59 85
>>> 92 88 82
>>> 63 66 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 39 38 36 40
>>> WARN: Could not find satisfactory control point fit - try 77
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 133 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 62 84
>>> 88 90 84
>>> 61 62 87
>>> 72 41 110
>>> INFO: Distances between consecutive points are 36 38 39 33
>>> WARN: Could not find satisfactory control point fit - try 78
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 112
>>> 117 59 88
>>> 96 89 84
>>> 63 72 88
>>> 71 38 97
>>> INFO: Distances between consecutive points are 33 37 37 36
>>> WARN: Could not find satisfactory control point fit - try 79
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 150 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 41 114
>>> 117 60 85
>>> 90 90 82
>>> 64 63 87
>>> 77 38 110
>>> INFO: Distances between consecutive points are 39 40 38 36
>>> WARN: Could not find satisfactory control point fit - try 80
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 139 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 111 68 85
>>> 82 90 84
>>> 64 59 85
>>> 79 40 110
>>> INFO: Distances between consecutive points are 34 36 36 35
>>> WARN: Could not find satisfactory control point fit - try 81
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 44 105
>>> 111 68 85
>>> 83 90 84
>>> 64 59 85
>>> 80 42 111
>>> INFO: Distances between consecutive points are 34 36 36 35
>>> WARN: Could not find satisfactory control point fit - try 82
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 100 33 102
>>> 114 58 83
>>> 91 90 84
>>> 63 65 87
>>> 73 42 113
>>> INFO: Distances between consecutive points are 34 39 38 36
>>> WARN: Could not find satisfactory control point fit - try 83
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 137 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 99 34 100
>>> 114 59 83
>>> 90 90 84
>>> 62 60 87
>>> 73 42 113
>>> INFO: Distances between consecutive points are 34 39 41 33
>>> WARN: Could not find satisfactory control point fit - try 84
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 146 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 112
>>> 116 58 85
>>> 93 88 82
>>> 63 67 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 39 38 37 41
>>> WARN: Could not find satisfactory control point fit - try 85
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 38 92
>>> 113 67 84
>>> 85 90 84
>>> 62 60 86
>>> 73 38 111
>>> INFO: Distances between consecutive points are 32 36 38 35
>>> WARN: Could not find satisfactory control point fit - try 86
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 140 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 120 62 86
>>> 90 88 83
>>> 61 64 85
>>> 75 35 108
>>> INFO: Distances between consecutive points are 36 40 38 40
>>> WARN: Could not find satisfactory control point fit - try 87
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 40 112
>>> 116 58 85
>>> 94 88 82
>>> 63 67 84
>>> 75 35 106
>>> INFO: Distances between consecutive points are 38 37 37 41
>>> WARN: Could not find satisfactory control point fit - try 88
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 134 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 119 60 85
>>> 93 88 83
>>> 62 69 85
>>> 76 37 104
>>> INFO: Distances between consecutive points are 34 38 36 40
>>> WARN: Could not find satisfactory control point fit - try 89
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 138 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 102 36 100
>>> 117 62 86
>>> 92 91 86
>>> 62 67 89
>>> 78 41 107
>>> INFO: Distances between consecutive points are 33 38 39 35
>>> WARN: Could not find satisfactory control point fit - try 90
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 132 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 41 113
>>> 116 57 88
>>> 97 88 84
>>> 65 73 87
>>> 71 38 97
>>> INFO: Distances between consecutive points are 32 37 35 37
>>> WARN: Could not find satisfactory control point fit - try 91
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 136 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 104 33 100
>>> 119 60 85
>>> 95 88 83
>>> 62 70 85
>>> 75 36 105
>>> INFO: Distances between consecutive points are 34 37 38 42
>>> WARN: Could not find satisfactory control point fit - try 92
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 130 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 42 107
>>> 117 62 86
>>> 94 90 83
>>> 64 72 87
>>> 72 40 96
>>> INFO: Distances between consecutive points are 31 36 35 34
>>> WARN: Could not find satisfactory control point fit - try 93
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 98 45 114
>>> 114 62 88
>>> 90 89 84
>>> 64 65 87
>>> 74 33 101
>>> INFO: Distances between consecutive points are 35 36 36 36
>>> WARN: Could not find satisfactory control point fit - try 94
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 141 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 37 103
>>> 114 68 86
>>> 85 91 84
>>> 64 62 86
>>> 74 33 101
>>> INFO: Distances between consecutive points are 36 37 36 34
>>> WARN: Could not find satisfactory control point fit - try 95
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 144 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 96 39 112
>>> 116 59 85
>>> 93 89 81
>>> 63 68 84
>>> 76 35 106
>>> INFO: Distances between consecutive points are 39 38 37 42
>>> WARN: Could not find satisfactory control point fit - try 96
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 151 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 106 41 112
>>> 117 60 84
>>> 92 90 82
>>> 64 66 86
>>> 77 38 110
>>> INFO: Distances between consecutive points are 36 39 37 39
>>> WARN: Could not find satisfactory control point fit - try 97
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 133 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 105 39 106
>>> 120 64 87
>>> 89 90 84
>>> 59 67 85
>>> 71 35 102
>>> INFO: Distances between consecutive points are 35 41 38 38
>>> WARN: Could not find satisfactory control point fit - try 98
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 143 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 97 35 99
>>> 114 61 81
>>> 89 91 83
>>> 62 61 86
>>> 74 40 112
>>> INFO: Distances between consecutive points are 36 39 40 36
>>> WARN: Could not find satisfactory control point fit - try 99
>>> Finding center streamline
>>> INFO: Step is 7 voxels
>>> INFO: Length of center streamline is 129 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> WARN: Defaulting to equidistant control points
>>> INFO: Selected control points are
>>> 103 39 92
>>> 111 69 84
>>> 83 89 85
>>> 61 59 86
>>> 72 39 112
>>> INFO: Distances between consecutive points are 32 34 37 35
>>> WARN: Could not find satisfactory control point fit - try 100
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 2212.85 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk
>>> INFO: Rejected 839 streamlines for straying off mask
>>> INFO: Rejected 304 streamlines for reversing direction
>>> INFO: Rejected 45 streamlines as length outliers
>>> INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119)
>>> Processing pathway 8 of 18...
>>> Matching streamline ends
>>> INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119)
>>> INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12)
>>> INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3)
>>> INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11)
>>> INFO: Split streamlines into 23 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 67506 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 104 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 98 193 75
>>> 108 164 69
>>> 88 150 75
>>> 73 168 69
>>> 83 193 81
>>> INFO: Distances between consecutive points are 31 25 24 29
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 57.864 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk
>>> INFO: Rejected 83 streamlines for straying off mask
>>> INFO: Rejected 6 streamlines for reversing direction
>>> INFO: Rejected 47 streamlines as length outliers
>>> INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92)
>>> Processing pathway 9 of 18...
>>> Matching streamline ends
>>> INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94)
>>> INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13)
>>> INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5)
>>> INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6)
>>> INFO: Split streamlines into 17 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 42884 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 72 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 107 187 71
>>> 113 167 73
>>> 111 158 74
>>> 107 138 80
>>> 95 113 81
>>> INFO: Distances between consecutive points are 21 9 21 28
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 9.28 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk
>>> INFO: Rejected 109 streamlines for straying off mask
>>> INFO: Rejected 20 streamlines for reversing direction
>>> INFO: Rejected 33 streamlines as length outliers
>>> INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93)
>>> Processing pathway 10 of 18...
>>> Matching streamline ends
>>> INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92)
>>> INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12)
>>> INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5)
>>> INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6)
>>> INFO: Split streamlines into 18 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 38520 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 81 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 69 194 85
>>> 71 186 82
>>> 68 157 78
>>> 81 115 78
>>> 82 111 78
>>> INFO: Distances between consecutive points are 9 29 44 4
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.144 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk
>>> INFO: Rejected 18 streamlines for straying off mask
>>> INFO: Rejected 3 streamlines for reversing direction
>>> INFO: Rejected 6 streamlines as length outliers
>>> INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134)
>>> Processing pathway 11 of 18...
>>> Matching streamline ends
>>> INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134)
>>> INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7)
>>> INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2)
>>> INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8)
>>> INFO: Split streamlines into 22 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 20097 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 93 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 101 74 96
>>> 101 81 101
>>> 96 112 105
>>> 97 139 100
>>> 97 163 79
>>> INFO: Distances between consecutive points are 9 32 27 32
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.013 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk
>>> INFO: Rejected 43 streamlines for straying off mask
>>> INFO: Rejected 9 streamlines for reversing direction
>>> INFO: Rejected 26 streamlines as length outliers
>>> INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124)
>>> Processing pathway 12 of 18...
>>> Matching streamline ends
>>> INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124)
>>> INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9)
>>> INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2)
>>> INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7)
>>> INFO: Split streamlines into 22 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 18871 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Length of center streamline is 81 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 81 82 98
>>> 81 98 104
>>> 83 128 104
>>> 82 160 90
>>> 86 164 93
>>> INFO: Distances between consecutive points are 17 30 35 6
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 6.164 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk
>>> INFO: Rejected 52 streamlines for straying off mask
>>> INFO: Rejected 62 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95)
>>> Processing pathway 13 of 18...
>>> Matching streamline ends
>>> INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92)
>>> INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12)
>>> INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5)
>>> INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11)
>>> INFO: Split streamlines into 12 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 17882 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 65 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 104 74 79
>>> 105 85 70
>>> 114 106 49
>>> 117 118 44
>>> 118 133 39
>>> INFO: Distances between consecutive points are 14 31 13 16
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 4.921 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk
>>> INFO: Rejected 491 streamlines for straying off mask
>>> INFO: Rejected 76 streamlines for reversing direction
>>> INFO: Rejected 0 streamlines as length outliers
>>> INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99)
>>> Processing pathway 14 of 18...
>>> Matching streamline ends
>>> INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99)
>>> INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8)
>>> INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2)
>>> INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4)
>>> INFO: Split streamlines into 13 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 15900 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 58 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 74 76 85
>>> 65 107 47
>>> 61 115 43
>>> 61 119 42
>>> 64 128 39
>>> INFO: Distances between consecutive points are 50 10 4 10
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 3.905 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk
>>> INFO: Rejected 181 streamlines for straying off mask
>>> INFO: Rejected 652 streamlines for reversing direction
>>> INFO: Rejected 40 streamlines as length outliers
>>> INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102)
>>> Processing pathway 15 of 18...
>>> Matching streamline ends
>>> INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103)
>>> INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11)
>>> INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3)
>>> INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12)
>>> INFO: Split streamlines into 14 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 50360 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 67 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 150 131 96
>>> 134 121 97
>>> 128 98 103
>>> 131 85 104
>>> 146 86 115
>>> INFO: Distances between consecutive points are 19 25 13 19
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 7.66 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk
>>> INFO: Rejected 311 streamlines for straying off mask
>>> INFO: Rejected 458 streamlines for reversing direction
>>> INFO: Rejected 95 streamlines as length outliers
>>> INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98)
>>> Processing pathway 16 of 18...
>>> Matching streamline ends
>>> INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101)
>>> INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12)
>>> INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3)
>>> INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11)
>>> INFO: Split streamlines into 15 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 65106 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 3 voxels
>>> INFO: Length of center streamline is 75 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 31 133 95
>>> 50 121 100
>>> 53 100 105
>>> 53 83 102
>>> 42 73 113
>>> INFO: Distances between consecutive points are 23 22 17 18
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 16.605 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk
>>> INFO: Rejected 353 streamlines for straying off mask
>>> INFO: Rejected 59 streamlines for reversing direction
>>> INFO: Rejected 77 streamlines as length outliers
>>> INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133)
>>> Processing pathway 17 of 18...
>>> Matching streamline ends
>>> INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133)
>>> INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10)
>>> INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3)
>>> INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9)
>>> INFO: Split streamlines into 23 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 45630 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 94 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 148 135 97
>>> 130 120 98
>>> 125 87 98
>>> 135 80 70
>>> 149 73 70
>>> INFO: Distances between consecutive points are 23 33 31 16
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 10.592 sec.
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk
>>> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
>>> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
>>> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk
>>> INFO: Rejected 61 streamlines for straying off mask
>>> INFO: Rejected 12 streamlines for reversing direction
>>> INFO: Rejected 44 streamlines as length outliers
>>> INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132)
>>> Processing pathway 18 of 18...
>>> Matching streamline ends
>>> INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132)
>>> INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15)
>>> INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3)
>>> INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8)
>>> INFO: Split streamlines into 24 segments
>>> Computing path histograms
>>> INFO: Total streamline volume is 31157 voxels
>>> Computing prior on underlying anatomy (non-truncated streamlines only)
>>> Computing prior on curvature (non-truncated streamlines only)
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 95 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 33 139 102
>>> 52 127 99
>>> 55 93 101
>>> 46 81 79
>>> 29 71 78
>>> INFO: Distances between consecutive points are 23 34 27 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.246 sec.
>>> dmri_train done
>>> #-------------------------------------
>>> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 08:19:08 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 6936780 58966460 0 372776 5055680
>>> -/+ buffers/cache: 1508324 64394916
>>> Swap: 67032060 1816772 65215288
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
>>> WARN: Running FSL's bedbost locally - this might take a while
>>> WARN: It is recommended to run this step on a cluster
>>> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
>>> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
>>> Finding center streamline
>>> INFO: Step is 5 voxels
>>> INFO: Length of center streamline is 95 voxels
>>> Selecting 5 points on center streamline
>>> INFO: Step is 4 voxels
>>> INFO: Selected control points are
>>> 33 139 102
>>> 52 127 99
>>> 55 93 101
>>> 46 81 79
>>> 29 71 78
>>> INFO: Distances between consecutive points are 23 34 27 20
>>> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
>>> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
>>> Done in 8.246 sec.
>>> dmri_train done
>>> #-------------------------------------
>>> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>>>
>>>
>>> New invocation of trac-all
>>>
>>>
>>> Tue Aug 6 08:19:08 BST 2013
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
>>> /usr/local/freesurfer/bin/trac-all
>>> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
>>> Subject 02ST
>>> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>> FREESURFER_HOME /usr/local/freesurfer
>>> Actual FREESURFER_HOME /usr/local/freesurfer
>>> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
>>> dsoto
>>> wmen-dsoto3
>>> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>> cputime unlimited
>>> filesize unlimited
>>> datasize unlimited
>>> stacksize 8192 kbytes
>>> coredumpsize 0 kbytes
>>> memoryuse unlimited
>>> vmemoryuse unlimited
>>> descriptors 1024
>>> memorylocked 64 kbytes
>>> maxproc 514727
>>> maxlocks unlimited
>>> maxsignal 514727
>>> maxmessage 819200
>>> maxnice 0
>>> maxrtprio 0
>>> maxrttime unlimited
>>>
>>> total used free shared buffers cached
>>> Mem: 65903240 6936780 58966460 0 372776 5055680
>>> -/+ buffers/cache: 1508324 64394916
>>> Swap: 67032060 1816772 65215288
>>>
>>> ########################################
>>> Program versions:
>>> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
>>> mri_convert --all-info
>>> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> FLIRT version 6.0
>>> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
>>> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
>>> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
>>> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
>>> WARN: Running FSL's bedbost locally - this might take a while
>>> WARN: It is recommended to run this step on a cluster
>>> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
>>>
>>>
>>>
>>>
>>>
>>> http://www1.imperial.ac.uk/medicine/people/d.soto/
>>>
>>> ________________________________________
>>> From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
>>> Sent: 06 August 2013 14:30
>>> To: Soto, David
>>> Cc: freesurfer(a)nmr.mgh.harvard.edu
>>> Subject: Re: [Freesurfer] trac-all inquiry
>>>
>>> Hi David - Can you please send your entire log file (from
>>> scripts/trac-all.log)? It's hard to tell what caused the errors without
>>> looking at the whole thing.
>>>
>>> Thanks,
>>> a.y
>>>
>>> On Tue, 6 Aug 2013, Soto, David wrote:
>>>
>>>> thanks Anastasia, I have some problems however- could you help please?
>>>>
>>>> as said, I am not using the DICOMS, my diffusion data has been converted to nii and then to mnc
>>>> my config file mostly accepts the defaults, and is simple as follows. There is a folder
>>>> 'diffree' which contains the dmri config file, the becs and bvals and the mnc difffusion file
>>>> $$$$$$$$
>>>> setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>>>> set dtroot = /home/dsoto/Documents/fmri/rsdtianawmgui
>>>> set subjlist = (02ST)
>>>> set runlist = (1)
>>>> set dcmroot = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree
>>>> set dcmlist = (diffdata.mnc)
>>>> set bvecfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t
>>>> set bvalfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t
>>>> set mnitemp = /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain
>>>> $$$$$$$$
>>>>
>>>> When i run
>>>> trac-all -c tracula02ST.txt -prep
>>>> I get some errors such as
>>>>
>>>> 1. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>>>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>>>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>>>
>>>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>>>
>>>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>>>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>>>
>>>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>>>
>>>> Image Exception : #22 :: ERROR: Could not open image
>>>>
>>>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>>>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>>> Abort (core dumped)
>>>>
>>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>>>> Cannot read input-matrix
>>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>>>> Cannot read concat-matrix
>>>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>>>> Cannot read input-matrix
>>>>
>>>>
>>>> Intriguinly, the script completes with the message
>>>>>>> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>>>>
>>>> HOWEVER, when I attempt the next step
>>>> trac-all -c tracula02ST.txt -bedp
>>>> it aborts saying "/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found"
>>>>
>>>> I am running FSL 5.0.4 under Ubuntu 12.04
>>>>
>>>> cheers
>>>> ds
>>>>
>>>>
>>>> http://www1.imperial.ac.uk/medicine/people/d.soto/
>>>>
>>>> ________________________________________
>>>> From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
>>>> Sent: 02 August 2013 19:15
>>>> To: Soto, David
>>>> Cc: freesurfer(a)nmr.mgh.harvard.edu
>>>> Subject: Re: [Freesurfer] trac-all inquiry
>>>>
>>>> Hi David - You need to run each of the steps (-prep, -bedp, -path)
>>>> separately. You can't run them all at the same time. See tutorial:
>>>> http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RunningTracula
>>>>
>>>> Hope this helps,
>>>> a.y
>>>>
>>>> On Fri, 2 Aug 2013, David Soto wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> I have successfully run recon-all in my dataset
>>>>> and now am attempting to use trac-all on my diffusion data
>>>>> obtained on a Siemens scanner.
>>>>>
>>>>> Diffusion dicoms were transformed to .nii using MRIConverter
>>>>> and then to .mnc using
>>>>>
>>>>> nii2mnc output.nii output_t.mnc.
>>>>>
>>>>> I am trying to run trac-all on a single subject and for this I
>>>>> have created the configuration file attached (tracula02ST)
>>>>>
>>>>> As you can see the SUBJECTS_DIR is /home/dsoto/Documents/fmri/rsdtianawmgui
>>>>> and within each subject the T1 serving as input for recon-all are in
>>>>> mri/orig
>>>>>
>>>>> while the diffusion images are in a folder call diffdata (named output_t.mnc)
>>>>> which also contains the bvecs and bvals files, which were transposed and
>>>>> organised
>>>>> according to the tutorial (named as bvecs_t.txt and bvals_t.txt)
>>>>>
>>>>> When I run:
>>>>> trac-all -c tracula02ST.txt
>>>>>
>>>>> I get:
>>>>> ERROR: no analysis step (-{prep,bedp,path}) has been selected
>>>>>
>>>>> THEN I run:
>>>>> trac-all -prep -bedp -path -c tracula02ST.txt which runs for 5 seconds or so
>>>>> and then gives the long output text below with an error message.
>>>>>
>>>>> Segmentation fault (core dumped)
>>>>> foreach: No match.
>>>>>
>>>>> The trac-all.log is attached also.
>>>>>
>>>>> Could you please help?
>>>>>
>>>>> Cheers
>>>>>
>>>>> David
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> The information in this e-mail is intended only for the person to whom it is
>>>> addressed. If you believe this e-mail was sent to you in error and the e-mail
>>>> contains patient information, please contact the Partners Compliance HelpLine at
>>>> http://www.partners.org/complianceline . If the e-mail was sent to you in error
>>>> but does not contain patient information, please contact the sender and properly
>>>> dispose of the e-mail.
>>>>
>>>>
>>>> _______________________________________________
>>>> Freesurfer mailing list
>>>> Freesurfer(a)nmr.mgh.harvard.edu
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>
>>>>
>>>>
>>>
>>>
>>>
>>
>>
>>
>
>
>
1
0
apologies, the trac-all.log sent was for a prior attempt
I did with a nii version of the diffusion data which did not work either
I converted then to mnc, and the log is this
-c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
Subject 02ST
SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
FREESURFER_HOME /usr/local/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
dsoto
wmen-dsoto3
Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize 8192 kbytes
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 1024
memorylocked 64 kbytes
maxproc 514727
maxlocks unlimited
maxsignal 514727
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buffers cached
Mem: 65903240 7003456 58899784 0 391760 5063564
-/+ buffers/cache: 1548132 64355108
Swap: 67032060 1791716 65240344
########################################
Program versions:
$Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
mri_convert --all-info
ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
FLIRT version 6.0
$Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
$Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-15:28:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
New invocation of trac-preproc
dsoto
wmen-dsoto3
Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize 8192 kbytes
coredumpsize 0 kbytes
memoryuse unlimited
vmemoryuse unlimited
descriptors 1024
memorylocked 64 kbytes
maxproc 514727
maxlocks unlimited
maxsignal 514727
maxmessage 819200
maxnice 0
maxrtprio 0
maxrttime unlimited
total used free shared buffers cached
Mem: 65903240 7004712 58898528 0 391760 5063564
-/+ buffers/cache: 1549388 64353852
Swap: 67032060 1791716 65240344
#-------------------------------------
/usr/local/freesurfer/bin/trac-preproc
#-------------------------------------
#@# Image corrections Tue Aug 6 16:28:18 BST 2013
mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
$Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, 1)
k_ras = (-0, -1, -0)
writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
INFO: input image orientation is LSP
INFO: input image determinant is -12.5224
fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
fslroi <input> <output> <tmin> <tsize>
fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
#-------------------------------------
#@# Intra-subject registration Tue Aug 6 16:30:24 BST 2013
mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
$Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
INFO: input image orientation is LIA
INFO: input image determinant is -1
fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
LoadVol 0
ZeroCRAS 0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
INFO: target does not conform to COR format, so I'm going to
reslice to COR. This will not affect the final registration.
Ttarg: --------------------
-1.000 0.000 0.000 128.000;
0.000 0.000 1.000 -128.000;
0.000 -1.000 0.000 128.000;
0.000 0.000 0.000 1.000;
INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
Tmov: --------------------
-1.000 0.000 0.000 128.000;
0.000 0.000 1.000 -128.000;
0.000 -1.000 0.000 128.000;
0.000 0.000 0.000 1.000;
mkheaderreg = 1, float2int = 0
Computing reg from header (and possibly input matrix)
---- Input registration matrix (computed) --------
1.000 0.000 0.000 0.000;
0.000 1.000 0.000 0.000;
0.000 0.000 1.000 1.000;
0.000 0.000 0.000 1.000;
---------------------------------------
---- Input registration matrix --------
1.000 0.000 0.000 0.000;
0.000 1.000 0.000 0.000;
0.000 0.000 1.000 1.000;
0.000 0.000 0.000 1.000;
Determinant 1
subject = subject-unknown
RegMat ---------------------------
1.000 0.000 0.000 0.000;
0.000 0.000 -1.000 0.000;
0.000 1.000 0.000 1.000;
0.000 0.000 0.000 1.000;
FSLOUTPUTTYPE NIFTI_GZ
tkreg2FSL: mov det = -1, ref det = -1
convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
Cannot read input-matrix
convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
Cannot read concat-matrix
convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
Cannot read input-matrix
#-------------------------------------
http://www1.imperial.ac.uk/medicine/people/d.soto/
________________________________________
From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
Sent: 06 August 2013 16:17
To: Soto, David
Cc: freesurfer(a)nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] trac-all inquiry
The first error is:
niiRead(): error opening file
/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
Does this file exist?
On Tue, 6 Aug 2013, Soto, David wrote:
> here it is - thanks!
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log
> Tue Aug 6 01:57:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5980064 59923176 0 83692 4482000
> -/+ buffers/cache: 1414372 64488868
> Swap: 67032060 1824148 65207912
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5980856 59922384 0 83692 4482000
> -/+ buffers/cache: 1415164 64488076
> Swap: 67032060 1824148 65207912
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 01:57:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:00:22 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5982784 59920456 0 83932 4482156
> -/+ buffers/cache: 1416696 64486544
> Swap: 67032060 1824120 65207940
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984932 59918308 0 83932 4482156
> -/+ buffers/cache: 1418844 64484396
> Swap: 67032060 1824120 65207940
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:00:32 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5983252 59919988 0 83956 4482156
> -/+ buffers/cache: 1417140 64486100
> Swap: 67032060 1824120 65207940
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984752 59918488 0 83956 4482156
> -/+ buffers/cache: 1418640 64484600
> Swap: 67032060 1824120 65207940
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:00:33 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:01:42 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984044 59919196 0 84144 4482192
> -/+ buffers/cache: 1417708 64485532
> Swap: 67032060 1824104 65207956
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5987064 59916176 0 84144 4482192
> -/+ buffers/cache: 1420728 64482512
> Swap: 67032060 1824104 65207956
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:01:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5985300 59917940 0 84160 4482188
> -/+ buffers/cache: 1418952 64484288
> Swap: 67032060 1824104 65207956
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5986324 59916916 0 84160 4482188
> -/+ buffers/cache: 1419976 64483264
> Swap: 67032060 1824104 65207956
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:01:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:02:48 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984700 59918540 0 84336 4482212
> -/+ buffers/cache: 1418152 64485088
> Swap: 67032060 1824076 65207984
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5987120 59916120 0 84336 4482216
> -/+ buffers/cache: 1420568 64482672
> Swap: 67032060 1824076 65207984
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:02:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5986420 59916820 0 84348 4482212
> -/+ buffers/cache: 1419860 64483380
> Swap: 67032060 1824076 65207984
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5988520 59914720 0 84348 4482212
> -/+ buffers/cache: 1421960 64481280
> Swap: 67032060 1824076 65207984
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:02:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
> #-------------------------------------
> #@# Masks Tue Aug 6 02:04:33 BST 2013
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> Binarizing based on matching values
> nMatch 5
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> binval 1
> binvalnot 0
> Found 467858 values in range
> Counting number of voxels
> Found 467858 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> Binarizing based on matching values
> nMatch 8
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> 5 28
> 6 60
> 7 16
> binval 1
> binvalnot 0
> Found 494467 values in range
> Counting number of voxels
> Found 494467 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> Binarizing based on matching values
> nMatch 2
> 0 4
> 1 43
> binval 0
> binvalnot 1
> Found 7382 values in range
> Counting number of voxels
> Found 7382 voxels in final mask
> mri_binarize done
> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> subject 02ST
> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> useribbon 0
> baseoffset 0
> labeling wm
> labeling hypo-intensities as wm
> dmaxctx 2.000000
> RipUnknown 0
>
> Reading lh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>
> Reading lh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>
> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>
> Reading rh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>
> Reading rh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>
> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
> Have color table for lh white annotation
> Have color table for rh white annotation
> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>
> Building hash of lh white
>
> Building hash of lh pial
>
> Building hash of rh white
>
> Building hash of rh pial
>
> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
> ASeg Vox2RAS: -----------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> -------------------------
>
> Labeling Slice
> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
> 140 141 142
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:09:35 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5990572 59912668 0 85028 4482988
> -/+ buffers/cache: 1422556 64480684
> Swap: 67032060 1824048 65208012
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5992728 59910512 0 85028 4482988
> -/+ buffers/cache: 1424712 64478528
> Swap: 67032060 1824048 65208012
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:11:25 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5989716 59913524 0 85072 4482980
> -/+ buffers/cache: 1421664 64481576
> Swap: 67032060 1824048 65208012
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5991732 59911508 0 85072 4482980
> -/+ buffers/cache: 1423680 64479560
> Swap: 67032060 1824048 65208012
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:11:26 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, 1)
> k_ras = (-0, -1, -0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> INFO: input image orientation is LSP
> INFO: input image determinant is -12.5224
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
> #-------------------------------------
> #@# Masks Tue Aug 6 02:15:07 BST 2013
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> Binarizing based on matching values
> nMatch 5
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> binval 1
> binvalnot 0
> Found 467858 values in range
> Counting number of voxels
> Found 467858 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> Binarizing based on matching values
> nMatch 8
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> 5 28
> 6 60
> 7 16
> binval 1
> binvalnot 0
> Found 494467 values in range
> Counting number of voxels
> Found 494467 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> Binarizing based on matching values
> nMatch 2
> 0 4
> 1 43
> binval 0
> binvalnot 1
> Found 7382 values in range
> Counting number of voxels
> Found 7382 voxels in final mask
> mri_binarize done
> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> subject 02ST
> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> useribbon 0
> baseoffset 0
> labeling wm
> labeling hypo-intensities as wm
> dmaxctx 2.000000
> RipUnknown 0
>
> Reading lh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>
> Reading lh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>
> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>
> Reading rh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>
> Reading rh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>
> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
> Have color table for lh white annotation
> Have color table for rh white annotation
> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>
> Building hash of lh white
>
> Building hash of lh pial
>
> Building hash of rh white
>
> Building hash of rh pial
>
> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
> ASeg Vox2RAS: -----------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> -------------------------
>
> Labeling Slice
> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
> 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
> 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
> 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
> 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
> 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
> 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358
> Used brute-force search on 0 voxels
> Fixing Parahip LH WM
> Found 6 clusters
> 0 k 4.000000
> 1 k 1038.000000
> 2 k 3.000000
> 3 k 1.000000
> 4 k 2.000000
> 5 k 1.000000
> Fixing Parahip RH WM
> Found 5 clusters
> 0 k 1.000000
> 1 k 12.000000
> 2 k 1.000000
> 3 k 1.000000
> 4 k 1038.000000
> Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
> Binarizing based on threshold
> min 1000
> max 2999
> binval 1
> binvalnot 0
> Found 458567 values in range
> Counting number of voxels
> Found 458567 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
> Binarizing based on threshold
> min 1000
> max 4999
> binval 1
> binvalnot 0
> Found 737102 values in range
> Counting number of voxels
> Found 737102 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
> Binarizing based on matching values
> nMatch 1
> 0 16
> binval 1
> binvalnot 0
> Found 19373 values in range
> Counting number of voxels
> Found 19373 voxels in final mask
> mri_binarize done
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz...
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz...
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt
> #-------------------------------------
> #@# Tensor fit Tue Aug 6 02:18:26 BST 2013
> dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> #-------------------------------------
> #@# Priors Tue Aug 6 02:18:26 BST 2013
> /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_!
roi2.flt
.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>
>
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh!
.ccg_PP_
roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
> Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni
> Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt
> Training subject directory list: /tmp/subj33.02ST.15264.txt
> Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk
> Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz
> Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0
> Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz
> Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
> FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> Number of control points for initial spline: 5
> Exclude previously chosen center streamlines: 0
> Use truncated streamlines: 0
> Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
> Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk
> INFO: Rejected 572 streamlines for straying off mask
> INFO: Rejected 89 streamlines for reversing direction
> INFO: Rejected 33 streamlines as length outliers
> INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132)
> Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz
> Processing pathway 1 of 18...
> Matching streamline ends
> INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132)
> INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12)
> INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7)
> INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6)
> INFO: Split streamlines into 26 segments
> Computing path histograms
> INFO: Total streamline volume is 39274 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 111 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 95 94 26
> 102 105 55
> 113 110 78
> 115 106 116
> 115 107 138
> INFO: Distances between consecutive points are 32 26 38 22
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 17.678 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk
> INFO: Rejected 441 streamlines for straying off mask
> INFO: Rejected 92 streamlines for reversing direction
> INFO: Rejected 30 streamlines as length outliers
> INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138)
> Processing pathway 2 of 18...
> Matching streamline ends
> INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138)
> INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14)
> INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7)
> INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 46198 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 111 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 81 92 30
> 77 104 62
> 65 110 82
> 66 107 112
> 71 110 143
> INFO: Distances between consecutive points are 34 24 30 32
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 19.176 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk
> INFO: Rejected 19 streamlines for straying off mask
> INFO: Rejected 26 streamlines for reversing direction
> INFO: Rejected 24 streamlines as length outliers
> INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142)
> Processing pathway 3 of 18...
> Matching streamline ends
> INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142)
> INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9)
> INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5)
> INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 39318 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 108 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 130 139 35
> 134 104 58
> 130 83 68
> 116 50 72
> 109 35 60
> INFO: Distances between consecutive points are 42 24 36 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.382 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk
> INFO: Rejected 18 streamlines for straying off mask
> INFO: Rejected 20 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132)
> Processing pathway 4 of 18...
> Matching streamline ends
> INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133)
> INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9)
> INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4)
> INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 28709 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 109 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 44 144 40
> 48 100 60
> 50 84 67
> 68 53 76
> 76 41 64
> INFO: Distances between consecutive points are 48 18 37 19
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 11.356 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk
> INFO: Rejected 67 streamlines for straying off mask
> INFO: Rejected 35 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104)
> Processing pathway 5 of 18...
> Matching streamline ends
> INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104)
> INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5)
> INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3)
> INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5)
> INFO: Split streamlines into 10 segments
> Computing path histograms
> INFO: Total streamline volume is 23343 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 71 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 124 144 40
> 128 128 47
> 125 126 59
> 109 151 62
> 107 168 58
> INFO: Distances between consecutive points are 18 13 30 18
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 6.691 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk
> INFO: Rejected 107 streamlines for straying off mask
> INFO: Rejected 120 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113)
> Processing pathway 6 of 18...
> Matching streamline ends
> INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113)
> INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6)
> INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3)
> INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5)
> INFO: Split streamlines into 10 segments
> Computing path histograms
> INFO: Total streamline volume is 26122 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 71 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 52 145 44
> 53 129 49
> 59 133 59
> 73 153 61
> 76 175 55
> INFO: Distances between consecutive points are 17 12 24 23
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.203 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk
> INFO: Rejected 2655 streamlines for straying off mask
> INFO: Rejected 231 streamlines for reversing direction
> INFO: Rejected 155 streamlines as length outliers
> INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162)
> Processing pathway 7 of 18...
> Matching streamline ends
> INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166)
> INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16)
> INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3)
> INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17)
> INFO: Split streamlines into 37 segments
> Computing path histograms
> INFO: Total streamline volume is 59210 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 107
> 116 58 86
> 91 91 84
> 62 64 87
> 72 38 111
> INFO: Distances between consecutive points are 33 41 40 37
> WARN: Could not find satisfactory control point fit - try 1
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 108
> 116 58 86
> 90 91 84
> 60 62 86
> 72 38 112
> INFO: Distances between consecutive points are 34 42 42 37
> WARN: Could not find satisfactory control point fit - try 2
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 61 86
> 89 91 84
> 61 60 86
> 72 39 112
> INFO: Distances between consecutive points are 35 40 42 35
> WARN: Could not find satisfactory control point fit - try 3
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 147 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 112
> 116 55 86
> 93 90 84
> 61 64 87
> 72 38 112
> INFO: Distances between consecutive points are 35 42 41 38
> WARN: Could not find satisfactory control point fit - try 4
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 112
> 116 56 86
> 93 90 84
> 61 65 87
> 72 38 112
> INFO: Distances between consecutive points are 35 41 41 38
> WARN: Could not find satisfactory control point fit - try 5
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 39 107
> 115 57 85
> 91 90 84
> 61 62 87
> 72 38 112
> INFO: Distances between consecutive points are 34 41 41 36
> WARN: Could not find satisfactory control point fit - try 6
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 107
> 115 60 86
> 88 90 85
> 61 59 86
> 72 39 115
> INFO: Distances between consecutive points are 34 40 41 37
> WARN: Could not find satisfactory control point fit - try 7
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 148 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 91 90 83
> 62 64 87
> 76 38 112
> INFO: Distances between consecutive points are 35 39 39 39
> WARN: Could not find satisfactory control point fit - try 8
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 103
> 114 61 85
> 89 90 84
> 61 63 87
> 71 40 111
> INFO: Distances between consecutive points are 32 38 39 35
> WARN: Could not find satisfactory control point fit - try 9
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 34 102
> 117 57 85
> 92 91 84
> 60 63 87
> 72 42 113
> INFO: Distances between consecutive points are 31 42 43 36
> WARN: Could not find satisfactory control point fit - try 10
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 57 85
> 93 91 84
> 60 65 87
> 72 43 113
> INFO: Distances between consecutive points are 32 42 42 36
> WARN: Could not find satisfactory control point fit - try 11
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 57 85
> 91 90 84
> 61 63 87
> 72 42 113
> INFO: Distances between consecutive points are 33 41 40 35
> WARN: Could not find satisfactory control point fit - try 12
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 59 85
> 91 91 84
> 60 65 87
> 71 40 111
> INFO: Distances between consecutive points are 33 41 41 36
> WARN: Could not find satisfactory control point fit - try 13
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 112 67 85
> 83 91 84
> 64 57 86
> 77 39 111
> INFO: Distances between consecutive points are 36 38 39 33
> WARN: Could not find satisfactory control point fit - try 14
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 33 102
> 115 59 84
> 90 91 83
> 62 62 87
> 73 39 111
> INFO: Distances between consecutive points are 35 41 41 35
> WARN: Could not find satisfactory control point fit - try 15
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 39 108
> 118 64 86
> 88 90 83
> 63 61 88
> 77 39 114
> INFO: Distances between consecutive points are 37 40 39 37
> WARN: Could not find satisfactory control point fit - try 16
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 150 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 34 104
> 117 60 88
> 92 90 83
> 60 66 92
> 79 41 103
> INFO: Distances between consecutive points are 36 39 41 33
> WARN: Could not find satisfactory control point fit - try 17
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 91 90 83
> 62 63 87
> 77 37 110
> INFO: Distances between consecutive points are 35 39 40 38
> WARN: Could not find satisfactory control point fit - try 18
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 148 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 66 85
> 84 91 84
> 64 58 86
> 78 39 112
> INFO: Distances between consecutive points are 35 38 39 35
> WARN: Could not find satisfactory control point fit - try 19
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 60 88
> 80 41 111
> INFO: Distances between consecutive points are 34 38 40 34
> WARN: Could not find satisfactory control point fit - try 20
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 57 85
> 93 91 84
> 60 64 87
> 71 40 111
> INFO: Distances between consecutive points are 32 42 43 36
> WARN: Could not find satisfactory control point fit - try 21
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 37 105
> 117 62 89
> 91 90 83
> 60 67 92
> 77 41 103
> INFO: Distances between consecutive points are 35 39 40 33
> WARN: Could not find satisfactory control point fit - try 22
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 149 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 90 90 83
> 63 63 87
> 78 38 112
> INFO: Distances between consecutive points are 35 40 38 38
> WARN: Could not find satisfactory control point fit - try 23
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 60 85
> 89 90 85
> 60 61 87
> 72 42 113
> INFO: Distances between consecutive points are 35 40 41 34
> WARN: Could not find satisfactory control point fit - try 24
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 40 105
> 115 61 87
> 88 92 85
> 62 62 89
> 70 36 100
> INFO: Distances between consecutive points are 33 41 40 29
> WARN: Could not find satisfactory control point fit - try 25
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 117 59 88
> 96 88 84
> 63 71 88
> 71 38 97
> INFO: Distances between consecutive points are 36 36 37 35
> WARN: Could not find satisfactory control point fit - try 26
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 58 85
> 88 90 85
> 60 61 87
> 71 41 113
> INFO: Distances between consecutive points are 34 42 40 35
> WARN: Could not find satisfactory control point fit - try 27
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 107
> 115 60 87
> 90 91 85
> 62 63 91
> 78 41 110
> INFO: Distances between consecutive points are 35 40 40 33
> WARN: Could not find satisfactory control point fit - try 28
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 152 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 43 108
> 113 62 86
> 88 93 84
> 63 62 89
> 80 42 112
> INFO: Distances between consecutive points are 34 40 40 35
> WARN: Could not find satisfactory control point fit - try 29
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 108
> 114 62 88
> 88 91 85
> 62 61 90
> 78 42 110
> INFO: Distances between consecutive points are 35 39 40 32
> WARN: Could not find satisfactory control point fit - try 30
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 66 85
> 85 92 84
> 63 59 87
> 75 39 107
> INFO: Distances between consecutive points are 35 38 40 31
> WARN: Could not find satisfactory control point fit - try 31
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 112 67 85
> 83 91 84
> 64 57 86
> 77 39 110
> INFO: Distances between consecutive points are 35 38 39 33
> WARN: Could not find satisfactory control point fit - try 32
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 42 112
> 118 61 89
> 91 89 84
> 62 63 88
> 78 39 114
> INFO: Distances between consecutive points are 33 39 39 39
> WARN: Could not find satisfactory control point fit - try 33
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 35 99
> 117 60 86
> 92 91 84
> 60 66 87
> 70 39 106
> INFO: Distances between consecutive points are 32 40 41 34
> WARN: Could not find satisfactory control point fit - try 34
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 100
> 114 63 84
> 86 90 85
> 61 60 87
> 72 39 115
> INFO: Distances between consecutive points are 33 39 39 37
> WARN: Could not find satisfactory control point fit - try 35
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 147 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 34 105
> 117 60 88
> 92 90 83
> 60 68 92
> 79 41 104
> INFO: Distances between consecutive points are 36 39 40 35
> WARN: Could not find satisfactory control point fit - try 36
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 36 104
> 117 62 89
> 90 91 83
> 59 65 92
> 79 42 103
> INFO: Distances between consecutive points are 36 40 41 32
> WARN: Could not find satisfactory control point fit - try 37
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 34 101
> 114 58 85
> 93 90 85
> 64 65 89
> 76 38 109
> INFO: Distances between consecutive points are 31 38 38 36
> WARN: Could not find satisfactory control point fit - try 38
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 35 99
> 117 60 86
> 93 91 85
> 60 67 87
> 69 38 106
> INFO: Distances between consecutive points are 31 39 41 36
> WARN: Could not find satisfactory control point fit - try 39
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 107 33 102
> 117 57 85
> 94 91 85
> 61 68 87
> 70 39 106
> INFO: Distances between consecutive points are 31 41 40 36
> WARN: Could not find satisfactory control point fit - try 40
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 34 99
> 117 61 86
> 91 91 84
> 60 65 87
> 70 39 107
> INFO: Distances between consecutive points are 33 40 41 34
> WARN: Could not find satisfactory control point fit - try 41
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 42 107
> 112 65 86
> 84 91 84
> 64 59 86
> 78 40 111
> INFO: Distances between consecutive points are 34 38 38 34
> WARN: Could not find satisfactory control point fit - try 42
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 101 41 115
> 116 56 87
> 98 88 84
> 64 73 88
> 71 38 97
> INFO: Distances between consecutive points are 35 37 37 37
> WARN: Could not find satisfactory control point fit - try 43
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 35 100
> 114 62 84
> 88 90 84
> 62 60 87
> 73 42 112
> INFO: Distances between consecutive points are 35 38 40 33
> WARN: Could not find satisfactory control point fit - try 44
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 62 89
> 90 89 84
> 64 62 88
> 79 39 114
> INFO: Distances between consecutive points are 34 39 38 38
> WARN: Could not find satisfactory control point fit - try 45
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 117 60 87
> 96 90 84
> 64 72 87
> 72 38 97
> INFO: Distances between consecutive points are 34 37 37 36
> WARN: Could not find satisfactory control point fit - try 46
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 62 89
> 89 89 83
> 64 60 88
> 78 39 114
> INFO: Distances between consecutive points are 34 40 39 36
> WARN: Could not find satisfactory control point fit - try 47
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 41 106
> 113 63 87
> 87 92 84
> 62 63 89
> 70 36 100
> INFO: Distances between consecutive points are 33 39 39 30
> WARN: Could not find satisfactory control point fit - try 48
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 41 107
> 113 64 87
> 87 91 84
> 62 61 89
> 70 36 100
> INFO: Distances between consecutive points are 34 38 39 28
> WARN: Could not find satisfactory control point fit - try 49
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 42 107
> 113 62 86
> 89 92 84
> 62 65 90
> 70 36 100
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 50
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 116 57 88
> 98 88 84
> 66 74 86
> 72 38 97
> INFO: Distances between consecutive points are 34 36 35 38
> WARN: Could not find satisfactory control point fit - try 51
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 61 88
> 77 38 106
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 52
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 39 108
> 117 60 85
> 96 90 83
> 64 72 87
> 72 38 97
> INFO: Distances between consecutive points are 35 37 37 36
> WARN: Could not find satisfactory control point fit - try 53
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 112 67 85
> 82 90 84
> 65 57 84
> 78 39 112
> INFO: Distances between consecutive points are 34 38 37 36
> WARN: Could not find satisfactory control point fit - try 54
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 61 84
> 89 90 84
> 62 64 87
> 72 40 111
> INFO: Distances between consecutive points are 35 38 38 35
> WARN: Could not find satisfactory control point fit - try 55
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 130 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 42 107
> 118 63 89
> 93 90 84
> 62 69 88
> 71 37 97
> INFO: Distances between consecutive points are 31 37 38 34
> WARN: Could not find satisfactory control point fit - try 56
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 41 106
> 112 66 87
> 85 91 84
> 63 59 89
> 79 41 110
> INFO: Distances between consecutive points are 34 37 39 32
> WARN: Could not find satisfactory control point fit - try 57
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 66 86
> 85 92 84
> 63 60 87
> 77 38 106
> INFO: Distances between consecutive points are 35 38 39 32
> WARN: Could not find satisfactory control point fit - try 58
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 40 106
> 114 63 89
> 89 92 85
> 62 66 91
> 70 36 100
> INFO: Distances between consecutive points are 33 38 38 32
> WARN: Could not find satisfactory control point fit - try 59
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 38 93
> 113 68 87
> 86 91 85
> 60 60 86
> 72 38 112
> INFO: Distances between consecutive points are 32 36 40 36
> WARN: Could not find satisfactory control point fit - try 60
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 40 107
> 113 64 89
> 87 91 85
> 62 61 90
> 78 41 110
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 61
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 128 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 43 107
> 118 61 88
> 95 89 84
> 63 72 88
> 71 37 97
> INFO: Distances between consecutive points are 29 36 36 37
> WARN: Could not find satisfactory control point fit - try 62
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 113 65 86
> 87 93 84
> 63 62 87
> 77 37 105
> INFO: Distances between consecutive points are 34 38 39 34
> WARN: Could not find satisfactory control point fit - try 63
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 60 85
> 92 88 83
> 60 68 85
> 72 35 102
> INFO: Distances between consecutive points are 35 40 38 39
> WARN: Could not find satisfactory control point fit - try 64
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 60 88
> 91 89 84
> 64 61 88
> 78 39 114
> INFO: Distances between consecutive points are 34 40 39 37
> WARN: Could not find satisfactory control point fit - try 65
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 63 86
> 89 88 83
> 62 63 85
> 75 35 108
> INFO: Distances between consecutive points are 37 40 37 38
> WARN: Could not find satisfactory control point fit - try 66
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 62 86
> 90 88 83
> 61 65 85
> 74 35 106
> INFO: Distances between consecutive points are 36 40 37 39
> WARN: Could not find satisfactory control point fit - try 67
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 32 101
> 114 59 83
> 90 91 84
> 62 62 87
> 72 40 111
> INFO: Distances between consecutive points are 35 40 40 34
> WARN: Could not find satisfactory control point fit - try 68
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 65 86
> 86 92 84
> 63 62 88
> 77 38 108
> INFO: Distances between consecutive points are 34 38 38 34
> WARN: Could not find satisfactory control point fit - try 69
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 127 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 40 100
> 120 66 87
> 89 90 84
> 59 68 85
> 71 35 102
> INFO: Distances between consecutive points are 33 39 37 39
> WARN: Could not find satisfactory control point fit - try 70
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 127 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 40 100
> 120 66 87
> 89 90 84
> 59 68 85
> 71 35 102
> INFO: Distances between consecutive points are 33 39 37 39
> WARN: Could not find satisfactory control point fit - try 71
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 113 64 86
> 89 93 83
> 64 66 90
> 71 36 100
> INFO: Distances between consecutive points are 34 38 37 32
> WARN: Could not find satisfactory control point fit - try 72
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 61 86
> 91 88 83
> 61 67 85
> 74 35 106
> INFO: Distances between consecutive points are 35 40 37 40
> WARN: Could not find satisfactory control point fit - try 73
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 45 114
> 115 62 88
> 89 91 84
> 64 63 87
> 75 34 104
> INFO: Distances between consecutive points are 35 39 38 35
> WARN: Could not find satisfactory control point fit - try 74
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 61 87
> 77 38 106
> INFO: Distances between consecutive points are 34 38 39 33
> WARN: Could not find satisfactory control point fit - try 75
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 38 111
> 119 61 87
> 91 90 83
> 59 67 86
> 71 35 102
> INFO: Distances between consecutive points are 38 41 40 38
> WARN: Could not find satisfactory control point fit - try 76
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 112
> 116 59 85
> 92 88 82
> 63 66 84
> 75 35 106
> INFO: Distances between consecutive points are 39 38 36 40
> WARN: Could not find satisfactory control point fit - try 77
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 133 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 62 84
> 88 90 84
> 61 62 87
> 72 41 110
> INFO: Distances between consecutive points are 36 38 39 33
> WARN: Could not find satisfactory control point fit - try 78
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 117 59 88
> 96 89 84
> 63 72 88
> 71 38 97
> INFO: Distances between consecutive points are 33 37 37 36
> WARN: Could not find satisfactory control point fit - try 79
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 150 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 117 60 85
> 90 90 82
> 64 63 87
> 77 38 110
> INFO: Distances between consecutive points are 39 40 38 36
> WARN: Could not find satisfactory control point fit - try 80
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 111 68 85
> 82 90 84
> 64 59 85
> 79 40 110
> INFO: Distances between consecutive points are 34 36 36 35
> WARN: Could not find satisfactory control point fit - try 81
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 111 68 85
> 83 90 84
> 64 59 85
> 80 42 111
> INFO: Distances between consecutive points are 34 36 36 35
> WARN: Could not find satisfactory control point fit - try 82
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 33 102
> 114 58 83
> 91 90 84
> 63 65 87
> 73 42 113
> INFO: Distances between consecutive points are 34 39 38 36
> WARN: Could not find satisfactory control point fit - try 83
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 59 83
> 90 90 84
> 62 60 87
> 73 42 113
> INFO: Distances between consecutive points are 34 39 41 33
> WARN: Could not find satisfactory control point fit - try 84
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 112
> 116 58 85
> 93 88 82
> 63 67 84
> 75 35 106
> INFO: Distances between consecutive points are 39 38 37 41
> WARN: Could not find satisfactory control point fit - try 85
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 38 92
> 113 67 84
> 85 90 84
> 62 60 86
> 73 38 111
> INFO: Distances between consecutive points are 32 36 38 35
> WARN: Could not find satisfactory control point fit - try 86
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 62 86
> 90 88 83
> 61 64 85
> 75 35 108
> INFO: Distances between consecutive points are 36 40 38 40
> WARN: Could not find satisfactory control point fit - try 87
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 112
> 116 58 85
> 94 88 82
> 63 67 84
> 75 35 106
> INFO: Distances between consecutive points are 38 37 37 41
> WARN: Could not find satisfactory control point fit - try 88
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 119 60 85
> 93 88 83
> 62 69 85
> 76 37 104
> INFO: Distances between consecutive points are 34 38 36 40
> WARN: Could not find satisfactory control point fit - try 89
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 36 100
> 117 62 86
> 92 91 86
> 62 67 89
> 78 41 107
> INFO: Distances between consecutive points are 33 38 39 35
> WARN: Could not find satisfactory control point fit - try 90
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 113
> 116 57 88
> 97 88 84
> 65 73 87
> 71 38 97
> INFO: Distances between consecutive points are 32 37 35 37
> WARN: Could not find satisfactory control point fit - try 91
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 119 60 85
> 95 88 83
> 62 70 85
> 75 36 105
> INFO: Distances between consecutive points are 34 37 38 42
> WARN: Could not find satisfactory control point fit - try 92
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 130 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 42 107
> 117 62 86
> 94 90 83
> 64 72 87
> 72 40 96
> INFO: Distances between consecutive points are 31 36 35 34
> WARN: Could not find satisfactory control point fit - try 93
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 45 114
> 114 62 88
> 90 89 84
> 64 65 87
> 74 33 101
> INFO: Distances between consecutive points are 35 36 36 36
> WARN: Could not find satisfactory control point fit - try 94
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 37 103
> 114 68 86
> 85 91 84
> 64 62 86
> 74 33 101
> INFO: Distances between consecutive points are 36 37 36 34
> WARN: Could not find satisfactory control point fit - try 95
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 112
> 116 59 85
> 93 89 81
> 63 68 84
> 76 35 106
> INFO: Distances between consecutive points are 39 38 37 42
> WARN: Could not find satisfactory control point fit - try 96
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 151 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 60 84
> 92 90 82
> 64 66 86
> 77 38 110
> INFO: Distances between consecutive points are 36 39 37 39
> WARN: Could not find satisfactory control point fit - try 97
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 133 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 39 106
> 120 64 87
> 89 90 84
> 59 67 85
> 71 35 102
> INFO: Distances between consecutive points are 35 41 38 38
> WARN: Could not find satisfactory control point fit - try 98
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 35 99
> 114 61 81
> 89 91 83
> 62 61 86
> 74 40 112
> INFO: Distances between consecutive points are 36 39 40 36
> WARN: Could not find satisfactory control point fit - try 99
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 129 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 39 92
> 111 69 84
> 83 89 85
> 61 59 86
> 72 39 112
> INFO: Distances between consecutive points are 32 34 37 35
> WARN: Could not find satisfactory control point fit - try 100
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 2212.85 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk
> INFO: Rejected 839 streamlines for straying off mask
> INFO: Rejected 304 streamlines for reversing direction
> INFO: Rejected 45 streamlines as length outliers
> INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119)
> Processing pathway 8 of 18...
> Matching streamline ends
> INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119)
> INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12)
> INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3)
> INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11)
> INFO: Split streamlines into 23 segments
> Computing path histograms
> INFO: Total streamline volume is 67506 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 104 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 98 193 75
> 108 164 69
> 88 150 75
> 73 168 69
> 83 193 81
> INFO: Distances between consecutive points are 31 25 24 29
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 57.864 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk
> INFO: Rejected 83 streamlines for straying off mask
> INFO: Rejected 6 streamlines for reversing direction
> INFO: Rejected 47 streamlines as length outliers
> INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92)
> Processing pathway 9 of 18...
> Matching streamline ends
> INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94)
> INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13)
> INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5)
> INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6)
> INFO: Split streamlines into 17 segments
> Computing path histograms
> INFO: Total streamline volume is 42884 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 72 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 107 187 71
> 113 167 73
> 111 158 74
> 107 138 80
> 95 113 81
> INFO: Distances between consecutive points are 21 9 21 28
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 9.28 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk
> INFO: Rejected 109 streamlines for straying off mask
> INFO: Rejected 20 streamlines for reversing direction
> INFO: Rejected 33 streamlines as length outliers
> INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93)
> Processing pathway 10 of 18...
> Matching streamline ends
> INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92)
> INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12)
> INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5)
> INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6)
> INFO: Split streamlines into 18 segments
> Computing path histograms
> INFO: Total streamline volume is 38520 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 81 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 69 194 85
> 71 186 82
> 68 157 78
> 81 115 78
> 82 111 78
> INFO: Distances between consecutive points are 9 29 44 4
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.144 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk
> INFO: Rejected 18 streamlines for straying off mask
> INFO: Rejected 3 streamlines for reversing direction
> INFO: Rejected 6 streamlines as length outliers
> INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134)
> Processing pathway 11 of 18...
> Matching streamline ends
> INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134)
> INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7)
> INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2)
> INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8)
> INFO: Split streamlines into 22 segments
> Computing path histograms
> INFO: Total streamline volume is 20097 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 93 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 101 74 96
> 101 81 101
> 96 112 105
> 97 139 100
> 97 163 79
> INFO: Distances between consecutive points are 9 32 27 32
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.013 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk
> INFO: Rejected 43 streamlines for straying off mask
> INFO: Rejected 9 streamlines for reversing direction
> INFO: Rejected 26 streamlines as length outliers
> INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124)
> Processing pathway 12 of 18...
> Matching streamline ends
> INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124)
> INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9)
> INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2)
> INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7)
> INFO: Split streamlines into 22 segments
> Computing path histograms
> INFO: Total streamline volume is 18871 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 81 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 81 82 98
> 81 98 104
> 83 128 104
> 82 160 90
> 86 164 93
> INFO: Distances between consecutive points are 17 30 35 6
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 6.164 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk
> INFO: Rejected 52 streamlines for straying off mask
> INFO: Rejected 62 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95)
> Processing pathway 13 of 18...
> Matching streamline ends
> INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92)
> INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12)
> INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5)
> INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11)
> INFO: Split streamlines into 12 segments
> Computing path histograms
> INFO: Total streamline volume is 17882 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 65 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 104 74 79
> 105 85 70
> 114 106 49
> 117 118 44
> 118 133 39
> INFO: Distances between consecutive points are 14 31 13 16
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 4.921 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk
> INFO: Rejected 491 streamlines for straying off mask
> INFO: Rejected 76 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99)
> Processing pathway 14 of 18...
> Matching streamline ends
> INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99)
> INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8)
> INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2)
> INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4)
> INFO: Split streamlines into 13 segments
> Computing path histograms
> INFO: Total streamline volume is 15900 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 58 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 74 76 85
> 65 107 47
> 61 115 43
> 61 119 42
> 64 128 39
> INFO: Distances between consecutive points are 50 10 4 10
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 3.905 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk
> INFO: Rejected 181 streamlines for straying off mask
> INFO: Rejected 652 streamlines for reversing direction
> INFO: Rejected 40 streamlines as length outliers
> INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102)
> Processing pathway 15 of 18...
> Matching streamline ends
> INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103)
> INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11)
> INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3)
> INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12)
> INFO: Split streamlines into 14 segments
> Computing path histograms
> INFO: Total streamline volume is 50360 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 67 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 150 131 96
> 134 121 97
> 128 98 103
> 131 85 104
> 146 86 115
> INFO: Distances between consecutive points are 19 25 13 19
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 7.66 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk
> INFO: Rejected 311 streamlines for straying off mask
> INFO: Rejected 458 streamlines for reversing direction
> INFO: Rejected 95 streamlines as length outliers
> INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98)
> Processing pathway 16 of 18...
> Matching streamline ends
> INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101)
> INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12)
> INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3)
> INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11)
> INFO: Split streamlines into 15 segments
> Computing path histograms
> INFO: Total streamline volume is 65106 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 75 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 31 133 95
> 50 121 100
> 53 100 105
> 53 83 102
> 42 73 113
> INFO: Distances between consecutive points are 23 22 17 18
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 16.605 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk
> INFO: Rejected 353 streamlines for straying off mask
> INFO: Rejected 59 streamlines for reversing direction
> INFO: Rejected 77 streamlines as length outliers
> INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133)
> Processing pathway 17 of 18...
> Matching streamline ends
> INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133)
> INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10)
> INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3)
> INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9)
> INFO: Split streamlines into 23 segments
> Computing path histograms
> INFO: Total streamline volume is 45630 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 94 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 148 135 97
> 130 120 98
> 125 87 98
> 135 80 70
> 149 73 70
> INFO: Distances between consecutive points are 23 33 31 16
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.592 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk
> INFO: Rejected 61 streamlines for straying off mask
> INFO: Rejected 12 streamlines for reversing direction
> INFO: Rejected 44 streamlines as length outliers
> INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132)
> Processing pathway 18 of 18...
> Matching streamline ends
> INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132)
> INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15)
> INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3)
> INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8)
> INFO: Split streamlines into 24 segments
> Computing path histograms
> INFO: Total streamline volume is 31157 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 95 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 33 139 102
> 52 127 99
> 55 93 101
> 46 81 79
> 29 71 78
> INFO: Distances between consecutive points are 23 34 27 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.246 sec.
> dmri_train done
> #-------------------------------------
> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 08:19:08 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 6936780 58966460 0 372776 5055680
> -/+ buffers/cache: 1508324 64394916
> Swap: 67032060 1816772 65215288
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
> WARN: Running FSL's bedbost locally - this might take a while
> WARN: It is recommended to run this step on a cluster
> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat
> ^C
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ ^C
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log
> Tue Aug 6 01:57:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5980064 59923176 0 83692 4482000
> -/+ buffers/cache: 1414372 64488868
> Swap: 67032060 1824148 65207912
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5980856 59922384 0 83692 4482000
> -/+ buffers/cache: 1415164 64488076
> Swap: 67032060 1824148 65207912
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 01:57:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:00:22 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5982784 59920456 0 83932 4482156
> -/+ buffers/cache: 1416696 64486544
> Swap: 67032060 1824120 65207940
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984932 59918308 0 83932 4482156
> -/+ buffers/cache: 1418844 64484396
> Swap: 67032060 1824120 65207940
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:00:32 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5983252 59919988 0 83956 4482156
> -/+ buffers/cache: 1417140 64486100
> Swap: 67032060 1824120 65207940
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984752 59918488 0 83956 4482156
> -/+ buffers/cache: 1418640 64484600
> Swap: 67032060 1824120 65207940
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:00:33 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:01:42 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984044 59919196 0 84144 4482192
> -/+ buffers/cache: 1417708 64485532
> Swap: 67032060 1824104 65207956
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5987064 59916176 0 84144 4482192
> -/+ buffers/cache: 1420728 64482512
> Swap: 67032060 1824104 65207956
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:01:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5985300 59917940 0 84160 4482188
> -/+ buffers/cache: 1418952 64484288
> Swap: 67032060 1824104 65207956
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5986324 59916916 0 84160 4482188
> -/+ buffers/cache: 1419976 64483264
> Swap: 67032060 1824104 65207956
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:01:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:02:48 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984700 59918540 0 84336 4482212
> -/+ buffers/cache: 1418152 64485088
> Swap: 67032060 1824076 65207984
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5987120 59916120 0 84336 4482216
> -/+ buffers/cache: 1420568 64482672
> Swap: 67032060 1824076 65207984
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:02:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5986420 59916820 0 84348 4482212
> -/+ buffers/cache: 1419860 64483380
> Swap: 67032060 1824076 65207984
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5988520 59914720 0 84348 4482212
> -/+ buffers/cache: 1421960 64481280
> Swap: 67032060 1824076 65207984
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:02:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
> #-------------------------------------
> #@# Masks Tue Aug 6 02:04:33 BST 2013
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> Binarizing based on matching values
> nMatch 5
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> binval 1
> binvalnot 0
> Found 467858 values in range
> Counting number of voxels
> Found 467858 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> Binarizing based on matching values
> nMatch 8
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> 5 28
> 6 60
> 7 16
> binval 1
> binvalnot 0
> Found 494467 values in range
> Counting number of voxels
> Found 494467 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> Binarizing based on matching values
> nMatch 2
> 0 4
> 1 43
> binval 0
> binvalnot 1
> Found 7382 values in range
> Counting number of voxels
> Found 7382 voxels in final mask
> mri_binarize done
> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> subject 02ST
> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> useribbon 0
> baseoffset 0
> labeling wm
> labeling hypo-intensities as wm
> dmaxctx 2.000000
> RipUnknown 0
>
> Reading lh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>
> Reading lh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>
> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>
> Reading rh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>
> Reading rh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>
> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
> Have color table for lh white annotation
> Have color table for rh white annotation
> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>
> Building hash of lh white
>
> Building hash of lh pial
>
> Building hash of rh white
>
> Building hash of rh pial
>
> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
> ASeg Vox2RAS: -----------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> -------------------------
>
> Labeling Slice
> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
> 140 141 142
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:09:35 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5990572 59912668 0 85028 4482988
> -/+ buffers/cache: 1422556 64480684
> Swap: 67032060 1824048 65208012
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5992728 59910512 0 85028 4482988
> -/+ buffers/cache: 1424712 64478528
> Swap: 67032060 1824048 65208012
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:11:25 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5989716 59913524 0 85072 4482980
> -/+ buffers/cache: 1421664 64481576
> Swap: 67032060 1824048 65208012
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5991732 59911508 0 85072 4482980
> -/+ buffers/cache: 1423680 64479560
> Swap: 67032060 1824048 65208012
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:11:26 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, 1)
> k_ras = (-0, -1, -0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> INFO: input image orientation is LSP
> INFO: input image determinant is -12.5224
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
> #-------------------------------------
> #@# Masks Tue Aug 6 02:15:07 BST 2013
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> Binarizing based on matching values
> nMatch 5
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> binval 1
> binvalnot 0
> Found 467858 values in range
> Counting number of voxels
> Found 467858 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> Binarizing based on matching values
> nMatch 8
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> 5 28
> 6 60
> 7 16
> binval 1
> binvalnot 0
> Found 494467 values in range
> Counting number of voxels
> Found 494467 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> Binarizing based on matching values
> nMatch 2
> 0 4
> 1 43
> binval 0
> binvalnot 1
> Found 7382 values in range
> Counting number of voxels
> Found 7382 voxels in final mask
> mri_binarize done
> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> subject 02ST
> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> useribbon 0
> baseoffset 0
> labeling wm
> labeling hypo-intensities as wm
> dmaxctx 2.000000
> RipUnknown 0
>
> Reading lh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>
> Reading lh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>
> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>
> Reading rh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>
> Reading rh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>
> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
> Have color table for lh white annotation
> Have color table for rh white annotation
> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>
> Building hash of lh white
>
> Building hash of lh pial
>
> Building hash of rh white
>
> Building hash of rh pial
>
> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
> ASeg Vox2RAS: -----------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> -------------------------
>
> Labeling Slice
> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
> 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
> 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
> 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
> 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
> 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
> 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358
> Used brute-force search on 0 voxels
> Fixing Parahip LH WM
> Found 6 clusters
> 0 k 4.000000
> 1 k 1038.000000
> 2 k 3.000000
> 3 k 1.000000
> 4 k 2.000000
> 5 k 1.000000
> Fixing Parahip RH WM
> Found 5 clusters
> 0 k 1.000000
> 1 k 12.000000
> 2 k 1.000000
> 3 k 1.000000
> 4 k 1038.000000
> Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
> Binarizing based on threshold
> min 1000
> max 2999
> binval 1
> binvalnot 0
> Found 458567 values in range
> Counting number of voxels
> Found 458567 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
> Binarizing based on threshold
> min 1000
> max 4999
> binval 1
> binvalnot 0
> Found 737102 values in range
> Counting number of voxels
> Found 737102 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
> Binarizing based on matching values
> nMatch 1
> 0 16
> binval 1
> binvalnot 0
> Found 19373 values in range
> Counting number of voxels
> Found 19373 voxels in final mask
> mri_binarize done
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz...
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz...
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt
> #-------------------------------------
> #@# Tensor fit Tue Aug 6 02:18:26 BST 2013
> dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> #-------------------------------------
> #@# Priors Tue Aug 6 02:18:26 BST 2013
> /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_!
roi2.flt
.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>
>
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh!
.ccg_PP_
roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
> Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni
> Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt
> Training subject directory list: /tmp/subj33.02ST.15264.txt
> Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk
> Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz
> Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0
> Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz
> Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
> FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> Number of control points for initial spline: 5
> Exclude previously chosen center streamlines: 0
> Use truncated streamlines: 0
> Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
> Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk
> INFO: Rejected 572 streamlines for straying off mask
> INFO: Rejected 89 streamlines for reversing direction
> INFO: Rejected 33 streamlines as length outliers
> INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132)
> Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz
> Processing pathway 1 of 18...
> Matching streamline ends
> INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132)
> INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12)
> INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7)
> INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6)
> INFO: Split streamlines into 26 segments
> Computing path histograms
> INFO: Total streamline volume is 39274 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 111 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 95 94 26
> 102 105 55
> 113 110 78
> 115 106 116
> 115 107 138
> INFO: Distances between consecutive points are 32 26 38 22
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 17.678 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk
> INFO: Rejected 441 streamlines for straying off mask
> INFO: Rejected 92 streamlines for reversing direction
> INFO: Rejected 30 streamlines as length outliers
> INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138)
> Processing pathway 2 of 18...
> Matching streamline ends
> INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138)
> INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14)
> INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7)
> INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 46198 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 111 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 81 92 30
> 77 104 62
> 65 110 82
> 66 107 112
> 71 110 143
> INFO: Distances between consecutive points are 34 24 30 32
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 19.176 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk
> INFO: Rejected 19 streamlines for straying off mask
> INFO: Rejected 26 streamlines for reversing direction
> INFO: Rejected 24 streamlines as length outliers
> INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142)
> Processing pathway 3 of 18...
> Matching streamline ends
> INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142)
> INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9)
> INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5)
> INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 39318 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 108 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 130 139 35
> 134 104 58
> 130 83 68
> 116 50 72
> 109 35 60
> INFO: Distances between consecutive points are 42 24 36 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.382 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk
> INFO: Rejected 18 streamlines for straying off mask
> INFO: Rejected 20 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132)
> Processing pathway 4 of 18...
> Matching streamline ends
> INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133)
> INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9)
> INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4)
> INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 28709 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 109 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 44 144 40
> 48 100 60
> 50 84 67
> 68 53 76
> 76 41 64
> INFO: Distances between consecutive points are 48 18 37 19
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 11.356 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk
> INFO: Rejected 67 streamlines for straying off mask
> INFO: Rejected 35 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104)
> Processing pathway 5 of 18...
> Matching streamline ends
> INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104)
> INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5)
> INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3)
> INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5)
> INFO: Split streamlines into 10 segments
> Computing path histograms
> INFO: Total streamline volume is 23343 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 71 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 124 144 40
> 128 128 47
> 125 126 59
> 109 151 62
> 107 168 58
> INFO: Distances between consecutive points are 18 13 30 18
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 6.691 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk
> INFO: Rejected 107 streamlines for straying off mask
> INFO: Rejected 120 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113)
> Processing pathway 6 of 18...
> Matching streamline ends
> INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113)
> INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6)
> INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3)
> INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5)
> INFO: Split streamlines into 10 segments
> Computing path histograms
> INFO: Total streamline volume is 26122 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 71 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 52 145 44
> 53 129 49
> 59 133 59
> 73 153 61
> 76 175 55
> INFO: Distances between consecutive points are 17 12 24 23
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.203 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk
> INFO: Rejected 2655 streamlines for straying off mask
> INFO: Rejected 231 streamlines for reversing direction
> INFO: Rejected 155 streamlines as length outliers
> INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162)
> Processing pathway 7 of 18...
> Matching streamline ends
> INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166)
> INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16)
> INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3)
> INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17)
> INFO: Split streamlines into 37 segments
> Computing path histograms
> INFO: Total streamline volume is 59210 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 107
> 116 58 86
> 91 91 84
> 62 64 87
> 72 38 111
> INFO: Distances between consecutive points are 33 41 40 37
> WARN: Could not find satisfactory control point fit - try 1
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 108
> 116 58 86
> 90 91 84
> 60 62 86
> 72 38 112
> INFO: Distances between consecutive points are 34 42 42 37
> WARN: Could not find satisfactory control point fit - try 2
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 61 86
> 89 91 84
> 61 60 86
> 72 39 112
> INFO: Distances between consecutive points are 35 40 42 35
> WARN: Could not find satisfactory control point fit - try 3
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 147 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 112
> 116 55 86
> 93 90 84
> 61 64 87
> 72 38 112
> INFO: Distances between consecutive points are 35 42 41 38
> WARN: Could not find satisfactory control point fit - try 4
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 112
> 116 56 86
> 93 90 84
> 61 65 87
> 72 38 112
> INFO: Distances between consecutive points are 35 41 41 38
> WARN: Could not find satisfactory control point fit - try 5
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 39 107
> 115 57 85
> 91 90 84
> 61 62 87
> 72 38 112
> INFO: Distances between consecutive points are 34 41 41 36
> WARN: Could not find satisfactory control point fit - try 6
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 107
> 115 60 86
> 88 90 85
> 61 59 86
> 72 39 115
> INFO: Distances between consecutive points are 34 40 41 37
> WARN: Could not find satisfactory control point fit - try 7
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 148 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 91 90 83
> 62 64 87
> 76 38 112
> INFO: Distances between consecutive points are 35 39 39 39
> WARN: Could not find satisfactory control point fit - try 8
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 103
> 114 61 85
> 89 90 84
> 61 63 87
> 71 40 111
> INFO: Distances between consecutive points are 32 38 39 35
> WARN: Could not find satisfactory control point fit - try 9
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 34 102
> 117 57 85
> 92 91 84
> 60 63 87
> 72 42 113
> INFO: Distances between consecutive points are 31 42 43 36
> WARN: Could not find satisfactory control point fit - try 10
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 57 85
> 93 91 84
> 60 65 87
> 72 43 113
> INFO: Distances between consecutive points are 32 42 42 36
> WARN: Could not find satisfactory control point fit - try 11
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 57 85
> 91 90 84
> 61 63 87
> 72 42 113
> INFO: Distances between consecutive points are 33 41 40 35
> WARN: Could not find satisfactory control point fit - try 12
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 59 85
> 91 91 84
> 60 65 87
> 71 40 111
> INFO: Distances between consecutive points are 33 41 41 36
> WARN: Could not find satisfactory control point fit - try 13
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 112 67 85
> 83 91 84
> 64 57 86
> 77 39 111
> INFO: Distances between consecutive points are 36 38 39 33
> WARN: Could not find satisfactory control point fit - try 14
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 33 102
> 115 59 84
> 90 91 83
> 62 62 87
> 73 39 111
> INFO: Distances between consecutive points are 35 41 41 35
> WARN: Could not find satisfactory control point fit - try 15
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 39 108
> 118 64 86
> 88 90 83
> 63 61 88
> 77 39 114
> INFO: Distances between consecutive points are 37 40 39 37
> WARN: Could not find satisfactory control point fit - try 16
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 150 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 34 104
> 117 60 88
> 92 90 83
> 60 66 92
> 79 41 103
> INFO: Distances between consecutive points are 36 39 41 33
> WARN: Could not find satisfactory control point fit - try 17
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 91 90 83
> 62 63 87
> 77 37 110
> INFO: Distances between consecutive points are 35 39 40 38
> WARN: Could not find satisfactory control point fit - try 18
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 148 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 66 85
> 84 91 84
> 64 58 86
> 78 39 112
> INFO: Distances between consecutive points are 35 38 39 35
> WARN: Could not find satisfactory control point fit - try 19
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 60 88
> 80 41 111
> INFO: Distances between consecutive points are 34 38 40 34
> WARN: Could not find satisfactory control point fit - try 20
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 57 85
> 93 91 84
> 60 64 87
> 71 40 111
> INFO: Distances between consecutive points are 32 42 43 36
> WARN: Could not find satisfactory control point fit - try 21
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 37 105
> 117 62 89
> 91 90 83
> 60 67 92
> 77 41 103
> INFO: Distances between consecutive points are 35 39 40 33
> WARN: Could not find satisfactory control point fit - try 22
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 149 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 90 90 83
> 63 63 87
> 78 38 112
> INFO: Distances between consecutive points are 35 40 38 38
> WARN: Could not find satisfactory control point fit - try 23
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 60 85
> 89 90 85
> 60 61 87
> 72 42 113
> INFO: Distances between consecutive points are 35 40 41 34
> WARN: Could not find satisfactory control point fit - try 24
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 40 105
> 115 61 87
> 88 92 85
> 62 62 89
> 70 36 100
> INFO: Distances between consecutive points are 33 41 40 29
> WARN: Could not find satisfactory control point fit - try 25
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 117 59 88
> 96 88 84
> 63 71 88
> 71 38 97
> INFO: Distances between consecutive points are 36 36 37 35
> WARN: Could not find satisfactory control point fit - try 26
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 58 85
> 88 90 85
> 60 61 87
> 71 41 113
> INFO: Distances between consecutive points are 34 42 40 35
> WARN: Could not find satisfactory control point fit - try 27
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 107
> 115 60 87
> 90 91 85
> 62 63 91
> 78 41 110
> INFO: Distances between consecutive points are 35 40 40 33
> WARN: Could not find satisfactory control point fit - try 28
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 152 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 43 108
> 113 62 86
> 88 93 84
> 63 62 89
> 80 42 112
> INFO: Distances between consecutive points are 34 40 40 35
> WARN: Could not find satisfactory control point fit - try 29
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 108
> 114 62 88
> 88 91 85
> 62 61 90
> 78 42 110
> INFO: Distances between consecutive points are 35 39 40 32
> WARN: Could not find satisfactory control point fit - try 30
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 66 85
> 85 92 84
> 63 59 87
> 75 39 107
> INFO: Distances between consecutive points are 35 38 40 31
> WARN: Could not find satisfactory control point fit - try 31
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 112 67 85
> 83 91 84
> 64 57 86
> 77 39 110
> INFO: Distances between consecutive points are 35 38 39 33
> WARN: Could not find satisfactory control point fit - try 32
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 42 112
> 118 61 89
> 91 89 84
> 62 63 88
> 78 39 114
> INFO: Distances between consecutive points are 33 39 39 39
> WARN: Could not find satisfactory control point fit - try 33
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 35 99
> 117 60 86
> 92 91 84
> 60 66 87
> 70 39 106
> INFO: Distances between consecutive points are 32 40 41 34
> WARN: Could not find satisfactory control point fit - try 34
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 100
> 114 63 84
> 86 90 85
> 61 60 87
> 72 39 115
> INFO: Distances between consecutive points are 33 39 39 37
> WARN: Could not find satisfactory control point fit - try 35
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 147 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 34 105
> 117 60 88
> 92 90 83
> 60 68 92
> 79 41 104
> INFO: Distances between consecutive points are 36 39 40 35
> WARN: Could not find satisfactory control point fit - try 36
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 36 104
> 117 62 89
> 90 91 83
> 59 65 92
> 79 42 103
> INFO: Distances between consecutive points are 36 40 41 32
> WARN: Could not find satisfactory control point fit - try 37
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 34 101
> 114 58 85
> 93 90 85
> 64 65 89
> 76 38 109
> INFO: Distances between consecutive points are 31 38 38 36
> WARN: Could not find satisfactory control point fit - try 38
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 35 99
> 117 60 86
> 93 91 85
> 60 67 87
> 69 38 106
> INFO: Distances between consecutive points are 31 39 41 36
> WARN: Could not find satisfactory control point fit - try 39
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 107 33 102
> 117 57 85
> 94 91 85
> 61 68 87
> 70 39 106
> INFO: Distances between consecutive points are 31 41 40 36
> WARN: Could not find satisfactory control point fit - try 40
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 34 99
> 117 61 86
> 91 91 84
> 60 65 87
> 70 39 107
> INFO: Distances between consecutive points are 33 40 41 34
> WARN: Could not find satisfactory control point fit - try 41
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 42 107
> 112 65 86
> 84 91 84
> 64 59 86
> 78 40 111
> INFO: Distances between consecutive points are 34 38 38 34
> WARN: Could not find satisfactory control point fit - try 42
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 101 41 115
> 116 56 87
> 98 88 84
> 64 73 88
> 71 38 97
> INFO: Distances between consecutive points are 35 37 37 37
> WARN: Could not find satisfactory control point fit - try 43
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 35 100
> 114 62 84
> 88 90 84
> 62 60 87
> 73 42 112
> INFO: Distances between consecutive points are 35 38 40 33
> WARN: Could not find satisfactory control point fit - try 44
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 62 89
> 90 89 84
> 64 62 88
> 79 39 114
> INFO: Distances between consecutive points are 34 39 38 38
> WARN: Could not find satisfactory control point fit - try 45
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 117 60 87
> 96 90 84
> 64 72 87
> 72 38 97
> INFO: Distances between consecutive points are 34 37 37 36
> WARN: Could not find satisfactory control point fit - try 46
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 62 89
> 89 89 83
> 64 60 88
> 78 39 114
> INFO: Distances between consecutive points are 34 40 39 36
> WARN: Could not find satisfactory control point fit - try 47
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 41 106
> 113 63 87
> 87 92 84
> 62 63 89
> 70 36 100
> INFO: Distances between consecutive points are 33 39 39 30
> WARN: Could not find satisfactory control point fit - try 48
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 41 107
> 113 64 87
> 87 91 84
> 62 61 89
> 70 36 100
> INFO: Distances between consecutive points are 34 38 39 28
> WARN: Could not find satisfactory control point fit - try 49
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 42 107
> 113 62 86
> 89 92 84
> 62 65 90
> 70 36 100
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 50
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 116 57 88
> 98 88 84
> 66 74 86
> 72 38 97
> INFO: Distances between consecutive points are 34 36 35 38
> WARN: Could not find satisfactory control point fit - try 51
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 61 88
> 77 38 106
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 52
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 39 108
> 117 60 85
> 96 90 83
> 64 72 87
> 72 38 97
> INFO: Distances between consecutive points are 35 37 37 36
> WARN: Could not find satisfactory control point fit - try 53
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 112 67 85
> 82 90 84
> 65 57 84
> 78 39 112
> INFO: Distances between consecutive points are 34 38 37 36
> WARN: Could not find satisfactory control point fit - try 54
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 61 84
> 89 90 84
> 62 64 87
> 72 40 111
> INFO: Distances between consecutive points are 35 38 38 35
> WARN: Could not find satisfactory control point fit - try 55
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 130 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 42 107
> 118 63 89
> 93 90 84
> 62 69 88
> 71 37 97
> INFO: Distances between consecutive points are 31 37 38 34
> WARN: Could not find satisfactory control point fit - try 56
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 41 106
> 112 66 87
> 85 91 84
> 63 59 89
> 79 41 110
> INFO: Distances between consecutive points are 34 37 39 32
> WARN: Could not find satisfactory control point fit - try 57
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 66 86
> 85 92 84
> 63 60 87
> 77 38 106
> INFO: Distances between consecutive points are 35 38 39 32
> WARN: Could not find satisfactory control point fit - try 58
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 40 106
> 114 63 89
> 89 92 85
> 62 66 91
> 70 36 100
> INFO: Distances between consecutive points are 33 38 38 32
> WARN: Could not find satisfactory control point fit - try 59
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 38 93
> 113 68 87
> 86 91 85
> 60 60 86
> 72 38 112
> INFO: Distances between consecutive points are 32 36 40 36
> WARN: Could not find satisfactory control point fit - try 60
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 40 107
> 113 64 89
> 87 91 85
> 62 61 90
> 78 41 110
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 61
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 128 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 43 107
> 118 61 88
> 95 89 84
> 63 72 88
> 71 37 97
> INFO: Distances between consecutive points are 29 36 36 37
> WARN: Could not find satisfactory control point fit - try 62
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 113 65 86
> 87 93 84
> 63 62 87
> 77 37 105
> INFO: Distances between consecutive points are 34 38 39 34
> WARN: Could not find satisfactory control point fit - try 63
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 60 85
> 92 88 83
> 60 68 85
> 72 35 102
> INFO: Distances between consecutive points are 35 40 38 39
> WARN: Could not find satisfactory control point fit - try 64
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 60 88
> 91 89 84
> 64 61 88
> 78 39 114
> INFO: Distances between consecutive points are 34 40 39 37
> WARN: Could not find satisfactory control point fit - try 65
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 63 86
> 89 88 83
> 62 63 85
> 75 35 108
> INFO: Distances between consecutive points are 37 40 37 38
> WARN: Could not find satisfactory control point fit - try 66
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 62 86
> 90 88 83
> 61 65 85
> 74 35 106
> INFO: Distances between consecutive points are 36 40 37 39
> WARN: Could not find satisfactory control point fit - try 67
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 32 101
> 114 59 83
> 90 91 84
> 62 62 87
> 72 40 111
> INFO: Distances between consecutive points are 35 40 40 34
> WARN: Could not find satisfactory control point fit - try 68
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 65 86
> 86 92 84
> 63 62 88
> 77 38 108
> INFO: Distances between consecutive points are 34 38 38 34
> WARN: Could not find satisfactory control point fit - try 69
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 127 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 40 100
> 120 66 87
> 89 90 84
> 59 68 85
> 71 35 102
> INFO: Distances between consecutive points are 33 39 37 39
> WARN: Could not find satisfactory control point fit - try 70
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 127 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 40 100
> 120 66 87
> 89 90 84
> 59 68 85
> 71 35 102
> INFO: Distances between consecutive points are 33 39 37 39
> WARN: Could not find satisfactory control point fit - try 71
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 113 64 86
> 89 93 83
> 64 66 90
> 71 36 100
> INFO: Distances between consecutive points are 34 38 37 32
> WARN: Could not find satisfactory control point fit - try 72
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 61 86
> 91 88 83
> 61 67 85
> 74 35 106
> INFO: Distances between consecutive points are 35 40 37 40
> WARN: Could not find satisfactory control point fit - try 73
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 45 114
> 115 62 88
> 89 91 84
> 64 63 87
> 75 34 104
> INFO: Distances between consecutive points are 35 39 38 35
> WARN: Could not find satisfactory control point fit - try 74
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 61 87
> 77 38 106
> INFO: Distances between consecutive points are 34 38 39 33
> WARN: Could not find satisfactory control point fit - try 75
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 38 111
> 119 61 87
> 91 90 83
> 59 67 86
> 71 35 102
> INFO: Distances between consecutive points are 38 41 40 38
> WARN: Could not find satisfactory control point fit - try 76
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 112
> 116 59 85
> 92 88 82
> 63 66 84
> 75 35 106
> INFO: Distances between consecutive points are 39 38 36 40
> WARN: Could not find satisfactory control point fit - try 77
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 133 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 62 84
> 88 90 84
> 61 62 87
> 72 41 110
> INFO: Distances between consecutive points are 36 38 39 33
> WARN: Could not find satisfactory control point fit - try 78
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 117 59 88
> 96 89 84
> 63 72 88
> 71 38 97
> INFO: Distances between consecutive points are 33 37 37 36
> WARN: Could not find satisfactory control point fit - try 79
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 150 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 117 60 85
> 90 90 82
> 64 63 87
> 77 38 110
> INFO: Distances between consecutive points are 39 40 38 36
> WARN: Could not find satisfactory control point fit - try 80
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 111 68 85
> 82 90 84
> 64 59 85
> 79 40 110
> INFO: Distances between consecutive points are 34 36 36 35
> WARN: Could not find satisfactory control point fit - try 81
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 111 68 85
> 83 90 84
> 64 59 85
> 80 42 111
> INFO: Distances between consecutive points are 34 36 36 35
> WARN: Could not find satisfactory control point fit - try 82
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 33 102
> 114 58 83
> 91 90 84
> 63 65 87
> 73 42 113
> INFO: Distances between consecutive points are 34 39 38 36
> WARN: Could not find satisfactory control point fit - try 83
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 59 83
> 90 90 84
> 62 60 87
> 73 42 113
> INFO: Distances between consecutive points are 34 39 41 33
> WARN: Could not find satisfactory control point fit - try 84
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 112
> 116 58 85
> 93 88 82
> 63 67 84
> 75 35 106
> INFO: Distances between consecutive points are 39 38 37 41
> WARN: Could not find satisfactory control point fit - try 85
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 38 92
> 113 67 84
> 85 90 84
> 62 60 86
> 73 38 111
> INFO: Distances between consecutive points are 32 36 38 35
> WARN: Could not find satisfactory control point fit - try 86
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 62 86
> 90 88 83
> 61 64 85
> 75 35 108
> INFO: Distances between consecutive points are 36 40 38 40
> WARN: Could not find satisfactory control point fit - try 87
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 112
> 116 58 85
> 94 88 82
> 63 67 84
> 75 35 106
> INFO: Distances between consecutive points are 38 37 37 41
> WARN: Could not find satisfactory control point fit - try 88
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 119 60 85
> 93 88 83
> 62 69 85
> 76 37 104
> INFO: Distances between consecutive points are 34 38 36 40
> WARN: Could not find satisfactory control point fit - try 89
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 36 100
> 117 62 86
> 92 91 86
> 62 67 89
> 78 41 107
> INFO: Distances between consecutive points are 33 38 39 35
> WARN: Could not find satisfactory control point fit - try 90
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 113
> 116 57 88
> 97 88 84
> 65 73 87
> 71 38 97
> INFO: Distances between consecutive points are 32 37 35 37
> WARN: Could not find satisfactory control point fit - try 91
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 119 60 85
> 95 88 83
> 62 70 85
> 75 36 105
> INFO: Distances between consecutive points are 34 37 38 42
> WARN: Could not find satisfactory control point fit - try 92
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 130 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 42 107
> 117 62 86
> 94 90 83
> 64 72 87
> 72 40 96
> INFO: Distances between consecutive points are 31 36 35 34
> WARN: Could not find satisfactory control point fit - try 93
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 45 114
> 114 62 88
> 90 89 84
> 64 65 87
> 74 33 101
> INFO: Distances between consecutive points are 35 36 36 36
> WARN: Could not find satisfactory control point fit - try 94
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 37 103
> 114 68 86
> 85 91 84
> 64 62 86
> 74 33 101
> INFO: Distances between consecutive points are 36 37 36 34
> WARN: Could not find satisfactory control point fit - try 95
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 112
> 116 59 85
> 93 89 81
> 63 68 84
> 76 35 106
> INFO: Distances between consecutive points are 39 38 37 42
> WARN: Could not find satisfactory control point fit - try 96
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 151 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 60 84
> 92 90 82
> 64 66 86
> 77 38 110
> INFO: Distances between consecutive points are 36 39 37 39
> WARN: Could not find satisfactory control point fit - try 97
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 133 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 39 106
> 120 64 87
> 89 90 84
> 59 67 85
> 71 35 102
> INFO: Distances between consecutive points are 35 41 38 38
> WARN: Could not find satisfactory control point fit - try 98
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 35 99
> 114 61 81
> 89 91 83
> 62 61 86
> 74 40 112
> INFO: Distances between consecutive points are 36 39 40 36
> WARN: Could not find satisfactory control point fit - try 99
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 129 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 39 92
> 111 69 84
> 83 89 85
> 61 59 86
> 72 39 112
> INFO: Distances between consecutive points are 32 34 37 35
> WARN: Could not find satisfactory control point fit - try 100
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 2212.85 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk
> INFO: Rejected 839 streamlines for straying off mask
> INFO: Rejected 304 streamlines for reversing direction
> INFO: Rejected 45 streamlines as length outliers
> INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119)
> Processing pathway 8 of 18...
> Matching streamline ends
> INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119)
> INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12)
> INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3)
> INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11)
> INFO: Split streamlines into 23 segments
> Computing path histograms
> INFO: Total streamline volume is 67506 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 104 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 98 193 75
> 108 164 69
> 88 150 75
> 73 168 69
> 83 193 81
> INFO: Distances between consecutive points are 31 25 24 29
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 57.864 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk
> INFO: Rejected 83 streamlines for straying off mask
> INFO: Rejected 6 streamlines for reversing direction
> INFO: Rejected 47 streamlines as length outliers
> INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92)
> Processing pathway 9 of 18...
> Matching streamline ends
> INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94)
> INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13)
> INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5)
> INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6)
> INFO: Split streamlines into 17 segments
> Computing path histograms
> INFO: Total streamline volume is 42884 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 72 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 107 187 71
> 113 167 73
> 111 158 74
> 107 138 80
> 95 113 81
> INFO: Distances between consecutive points are 21 9 21 28
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 9.28 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk
> INFO: Rejected 109 streamlines for straying off mask
> INFO: Rejected 20 streamlines for reversing direction
> INFO: Rejected 33 streamlines as length outliers
> INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93)
> Processing pathway 10 of 18...
> Matching streamline ends
> INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92)
> INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12)
> INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5)
> INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6)
> INFO: Split streamlines into 18 segments
> Computing path histograms
> INFO: Total streamline volume is 38520 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 81 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 69 194 85
> 71 186 82
> 68 157 78
> 81 115 78
> 82 111 78
> INFO: Distances between consecutive points are 9 29 44 4
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.144 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk
> INFO: Rejected 18 streamlines for straying off mask
> INFO: Rejected 3 streamlines for reversing direction
> INFO: Rejected 6 streamlines as length outliers
> INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134)
> Processing pathway 11 of 18...
> Matching streamline ends
> INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134)
> INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7)
> INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2)
> INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8)
> INFO: Split streamlines into 22 segments
> Computing path histograms
> INFO: Total streamline volume is 20097 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 93 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 101 74 96
> 101 81 101
> 96 112 105
> 97 139 100
> 97 163 79
> INFO: Distances between consecutive points are 9 32 27 32
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.013 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk
> INFO: Rejected 43 streamlines for straying off mask
> INFO: Rejected 9 streamlines for reversing direction
> INFO: Rejected 26 streamlines as length outliers
> INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124)
> Processing pathway 12 of 18...
> Matching streamline ends
> INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124)
> INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9)
> INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2)
> INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7)
> INFO: Split streamlines into 22 segments
> Computing path histograms
> INFO: Total streamline volume is 18871 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 81 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 81 82 98
> 81 98 104
> 83 128 104
> 82 160 90
> 86 164 93
> INFO: Distances between consecutive points are 17 30 35 6
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 6.164 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk
> INFO: Rejected 52 streamlines for straying off mask
> INFO: Rejected 62 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95)
> Processing pathway 13 of 18...
> Matching streamline ends
> INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92)
> INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12)
> INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5)
> INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11)
> INFO: Split streamlines into 12 segments
> Computing path histograms
> INFO: Total streamline volume is 17882 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 65 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 104 74 79
> 105 85 70
> 114 106 49
> 117 118 44
> 118 133 39
> INFO: Distances between consecutive points are 14 31 13 16
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 4.921 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk
> INFO: Rejected 491 streamlines for straying off mask
> INFO: Rejected 76 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99)
> Processing pathway 14 of 18...
> Matching streamline ends
> INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99)
> INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8)
> INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2)
> INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4)
> INFO: Split streamlines into 13 segments
> Computing path histograms
> INFO: Total streamline volume is 15900 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 58 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 74 76 85
> 65 107 47
> 61 115 43
> 61 119 42
> 64 128 39
> INFO: Distances between consecutive points are 50 10 4 10
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 3.905 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk
> INFO: Rejected 181 streamlines for straying off mask
> INFO: Rejected 652 streamlines for reversing direction
> INFO: Rejected 40 streamlines as length outliers
> INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102)
> Processing pathway 15 of 18...
> Matching streamline ends
> INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103)
> INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11)
> INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3)
> INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12)
> INFO: Split streamlines into 14 segments
> Computing path histograms
> INFO: Total streamline volume is 50360 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 67 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 150 131 96
> 134 121 97
> 128 98 103
> 131 85 104
> 146 86 115
> INFO: Distances between consecutive points are 19 25 13 19
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 7.66 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk
> INFO: Rejected 311 streamlines for straying off mask
> INFO: Rejected 458 streamlines for reversing direction
> INFO: Rejected 95 streamlines as length outliers
> INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98)
> Processing pathway 16 of 18...
> Matching streamline ends
> INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101)
> INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12)
> INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3)
> INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11)
> INFO: Split streamlines into 15 segments
> Computing path histograms
> INFO: Total streamline volume is 65106 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 75 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 31 133 95
> 50 121 100
> 53 100 105
> 53 83 102
> 42 73 113
> INFO: Distances between consecutive points are 23 22 17 18
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 16.605 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk
> INFO: Rejected 353 streamlines for straying off mask
> INFO: Rejected 59 streamlines for reversing direction
> INFO: Rejected 77 streamlines as length outliers
> INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133)
> Processing pathway 17 of 18...
> Matching streamline ends
> INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133)
> INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10)
> INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3)
> INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9)
> INFO: Split streamlines into 23 segments
> Computing path histograms
> INFO: Total streamline volume is 45630 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 94 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 148 135 97
> 130 120 98
> 125 87 98
> 135 80 70
> 149 73 70
> INFO: Distances between consecutive points are 23 33 31 16
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.592 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk
> INFO: Rejected 61 streamlines for straying off mask
> INFO: Rejected 12 streamlines for reversing direction
> INFO: Rejected 44 streamlines as length outliers
> INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132)
> Processing pathway 18 of 18...
> Matching streamline ends
> INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132)
> INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15)
> INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3)
> INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8)
> INFO: Split streamlines into 24 segments
> Computing path histograms
> INFO: Total streamline volume is 31157 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 95 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 33 139 102
> 52 127 99
> 55 93 101
> 46 81 79
> 29 71 78
> INFO: Distances between consecutive points are 23 34 27 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.246 sec.
> dmri_train done
> #-------------------------------------
> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 08:19:08 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 6936780 58966460 0 372776 5055680
> -/+ buffers/cache: 1508324 64394916
> Swap: 67032060 1816772 65215288
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
> WARN: Running FSL's bedbost locally - this might take a while
> WARN: It is recommended to run this step on a cluster
> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$ cat trac-all.log
> Tue Aug 6 01:57:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5980064 59923176 0 83692 4482000
> -/+ buffers/cache: 1414372 64488868
> Swap: 67032060 1824148 65207912
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-00:57:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5980856 59922384 0 83692 4482000
> -/+ buffers/cache: 1415164 64488076
> Swap: 67032060 1824148 65207912
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 01:57:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 01:57:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 01:57:58 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:00:22 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5982784 59920456 0 83932 4482156
> -/+ buffers/cache: 1416696 64486544
> Swap: 67032060 1824120 65207940
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:22-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984932 59918308 0 83932 4482156
> -/+ buffers/cache: 1418844 64484396
> Swap: 67032060 1824120 65207940
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:00:32 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5983252 59919988 0 83956 4482156
> -/+ buffers/cache: 1417140 64486100
> Swap: 67032060 1824120 65207940
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:00:32-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984752 59918488 0 83956 4482156
> -/+ buffers/cache: 1418640 64484600
> Swap: 67032060 1824120 65207940
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:00:33 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree//output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:00:33 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:00:35 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:01:42 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984044 59919196 0 84144 4482192
> -/+ buffers/cache: 1417708 64485532
> Swap: 67032060 1824104 65207956
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:42-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5987064 59916176 0 84144 4482192
> -/+ buffers/cache: 1420728 64482512
> Swap: 67032060 1824104 65207956
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:01:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5985300 59917940 0 84160 4482188
> -/+ buffers/cache: 1418952 64484288
> Swap: 67032060 1824104 65207956
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:01:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5986324 59916916 0 84160 4482188
> -/+ buffers/cache: 1419976 64483264
> Swap: 67032060 1824104 65207956
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:01:56 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:01:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:01:58 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:02:48 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5984700 59918540 0 84336 4482212
> -/+ buffers/cache: 1418152 64485088
> Swap: 67032060 1824076 65207984
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:48-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5987120 59916120 0 84336 4482216
> -/+ buffers/cache: 1420568 64482672
> Swap: 67032060 1824076 65207984
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:02:56 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5986420 59916820 0 84348 4482212
> -/+ buffers/cache: 1419860 64483380
> Swap: 67032060 1824076 65207984
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:02:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5988520 59914720 0 84348 4482212
> -/+ buffers/cache: 1421960 64481280
> Swap: 67032060 1824076 65207984
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:02:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> nifti1Read(): unsupported slice timing pattern 5 in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/output.nii...
> No such file or directory
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> ERROR: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz does not exist
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs': No such file or directory
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals': No such file or directory
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> Input does not exist or is not in a supported format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs': No such file or directory
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> grep: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> wc: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog: No such file or directory
> ERROR: Transform file should be an eddy_correct log file or a .mat file
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:02:57 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:02:59 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
> #-------------------------------------
> #@# Masks Tue Aug 6 02:04:33 BST 2013
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> Binarizing based on matching values
> nMatch 5
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> binval 1
> binvalnot 0
> Found 467858 values in range
> Counting number of voxels
> Found 467858 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> Binarizing based on matching values
> nMatch 8
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> 5 28
> 6 60
> 7 16
> binval 1
> binvalnot 0
> Found 494467 values in range
> Counting number of voxels
> Found 494467 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> Binarizing based on matching values
> nMatch 2
> 0 4
> 1 43
> binval 0
> binvalnot 1
> Found 7382 values in range
> Counting number of voxels
> Found 7382 voxels in final mask
> mri_binarize done
> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> subject 02ST
> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> useribbon 0
> baseoffset 0
> labeling wm
> labeling hypo-intensities as wm
> dmaxctx 2.000000
> RipUnknown 0
>
> Reading lh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>
> Reading lh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>
> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>
> Reading rh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>
> Reading rh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>
> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
> Have color table for lh white annotation
> Have color table for rh white annotation
> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>
> Building hash of lh white
>
> Building hash of lh pial
>
> Building hash of rh white
>
> Building hash of rh pial
>
> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
> ASeg Vox2RAS: -----------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> -------------------------
>
> Labeling Slice
> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
> 140 141 142
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:09:35 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5990572 59912668 0 85028 4482988
> -/+ buffers/cache: 1422556 64480684
> Swap: 67032060 1824048 65208012
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:09:35-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5992728 59910512 0 85028 4482988
> -/+ buffers/cache: 1424712 64478528
> Swap: 67032060 1824048 65208012
>
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 02:11:25 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -prep
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5989716 59913524 0 85072 4482980
> -/+ buffers/cache: 1421664 64481576
> Swap: 67032060 1824048 65208012
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-01:11:25-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
>
>
> New invocation of trac-preproc
>
>
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 5991732 59911508 0 85072 4482980
> -/+ buffers/cache: 1423680 64479560
> Swap: 67032060 1824048 65208012
>
> #-------------------------------------
> /usr/local/freesurfer/bin/trac-preproc
> #-------------------------------------
> #@# Image corrections Tue Aug 6 02:11:26 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/diffdata.mnc...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, 1)
> k_ras = (-0, -1, -0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz...
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs
> cp /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> INFO: input image orientation is LSP
> INFO: input image determinant is -12.5224
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.nii.gz x -z y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz
> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvals, converting to FSL format
> INFO: found /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig.mghdti.bvecs, converting to FSL format
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.mghdti.bvals /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals
> eddy_correct /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_orig_flip.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz 0
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0000
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0001
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0002
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0003
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0004
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0005
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0006
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0007
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0008
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0009
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0010
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0011
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0012
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0013
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0014
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0015
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0016
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0017
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0018
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0019
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0020
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0021
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0022
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0023
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0024
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0025
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0026
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0027
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0028
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0029
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0030
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0031
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0032
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0033
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0034
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0035
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0036
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0037
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0038
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0039
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0040
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0041
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0042
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0043
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0044
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0045
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0046
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0047
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0048
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0049
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0050
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0051
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0052
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0053
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0054
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0055
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0056
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0057
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0058
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0059
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0060
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0061
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0062
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0063
> processing /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_tmp0064
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot
> xfmrot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.ecclog /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs.norot /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs
> fslroi /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz 0
>
> Usage: fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
> fslroi <input> <output> <tmin> <tsize>
>
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize> <tmin> <tsize>
> Note: indexing (in both time and space) starts with 0 not 1! Inputting -1 for a size will set it to the full image extent for that dimension.
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>
> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>
> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
> #-------------------------------------
> #@# Intra-subject registration Tue Aug 6 02:13:31 BST 2013
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brain.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz...
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> tkregister2 --mov /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz --targ /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat --reg /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
> target volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> movable volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> reg file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.dat
> LoadVol 0
> ZeroCRAS 0
> $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
> Diagnostic Level -1
> INFO: loading target /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz
> INFO: target does not conform to COR format, so I'm going to
> reslice to COR. This will not affect the final registration.
> Ttarg: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> INFO: loading movable /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_orig.nii.gz
> Tmov: --------------------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> mkheaderreg = 1, float2int = 0
> Computing reg from header (and possibly input matrix)
> ---- Input registration matrix (computed) --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> ---------------------------------------
> ---- Input registration matrix --------
> 1.000 0.000 0.000 0.000;
> 0.000 1.000 0.000 0.000;
> 0.000 0.000 1.000 1.000;
> 0.000 0.000 0.000 1.000;
> Determinant 1
> subject = subject-unknown
> RegMat ---------------------------
> 1.000 0.000 0.000 0.000;
> 0.000 0.000 -1.000 0.000;
> 0.000 1.000 0.000 1.000;
> 0.000 0.000 0.000 1.000;
> FSLOUTPUTTYPE NIFTI_GZ
> tkreg2FSL: mov det = -1, ref det = -1
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
> Cannot read input-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
> Cannot read concat-matrix
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
> Cannot read input-matrix
> #-------------------------------------
> #@# Inter-subject registration Tue Aug 6 02:13:32 BST 2013
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat_mni.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -cost mutualinfo
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anat.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/mni2anatorig.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2mni.mat
> #-------------------------------------
> #@# Masks Tue Aug 6 02:15:07 BST 2013
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz
> Binarizing based on matching values
> nMatch 5
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> binval 1
> binvalnot 0
> Found 467858 values in range
> Counting number of voxels
> Found 467858 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz
> Binarizing based on matching values
> nMatch 8
> 0 2
> 1 7
> 2 41
> 3 46
> 4 77
> 5 28
> 6 60
> 7 16
> binval 1
> binvalnot 0
> Found 494467 values in range
> Counting number of voxels
> Found 494467 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz
> Binarizing based on matching values
> nMatch 2
> 0 4
> 1 43
> binval 0
> binvalnot 1
> Found 7382 values in range
> Counting number of voxels
> Found 7382 voxels in final mask
> mri_binarize done
> mri_aparc2aseg --s 02ST --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> subject 02ST
> outvol /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> useribbon 0
> baseoffset 0
> labeling wm
> labeling hypo-intensities as wm
> dmaxctx 2.000000
> RipUnknown 0
>
> Reading lh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.white
>
> Reading lh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/lh.pial
>
> Loading lh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
>
> Reading rh white surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.white
>
> Reading rh pial surface
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/surf/rh.pial
>
> Loading rh annotations from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/label/rh.aparc.annot
> reading colortable from annotation file...
> colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
> Have color table for lh white annotation
> Have color table for rh white annotation
> Loading ribbon segmentation from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/ribbon.mgz
> Loading filled from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/filled.mgz
>
> Building hash of lh white
>
> Building hash of lh pial
>
> Building hash of rh white
>
> Building hash of rh pial
>
> Loading aseg from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aseg.mgz
> ASeg Vox2RAS: -----------
> -1.000 0.000 0.000 128.000;
> 0.000 0.000 1.000 -128.000;
> 0.000 -1.000 0.000 128.000;
> 0.000 0.000 0.000 1.000;
> -------------------------
>
> Labeling Slice
> 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
> 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
> 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
> 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
> 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
> 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
> 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
> 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
> 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
> 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
> 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
> 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
> 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 902358
> Used brute-force search on 0 voxels
> Fixing Parahip LH WM
> Found 6 clusters
> 0 k 4.000000
> 1 k 1038.000000
> 2 k 3.000000
> 3 k 1.000000
> 4 k 2.000000
> 5 k 1.000000
> Fixing Parahip RH WM
> Found 5 clusters
> 0 k 1.000000
> 1 k 12.000000
> 2 k 1.000000
> 3 k 1.000000
> 4 k 1038.000000
> Writing output aseg to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz
> Binarizing based on threshold
> min 1000
> max 2999
> binval 1
> binvalnot 0
> Found 458567 values in range
> Counting number of voxels
> Found 458567 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz
> Binarizing based on threshold
> min 1000
> max 4999
> binval 1
> binvalnot 0
> Found 737102 values in range
> Counting number of voxels
> Found 737102 voxels in final mask
> mri_binarize done
> mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
>
> $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline mri_binarize --i /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz --match 16 --o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
>
> input /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz
> frame 0
> nErode3d 0
> nErode2d 0
> output /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz
> Binarizing based on matching values
> nMatch 1
> 0 16
> binval 1
> binvalnot 0
> Found 19373 values in range
> Counting number of voxels
> Found 19373 voxels in final mask
> mri_binarize done
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz -add /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/Brain-Stem.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/brainmask.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz...
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
> mri_convert /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz
> $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
> reading from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/mri/aparc+aseg.mgz...
> TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
> i_ras = (-1, 0, 0)
> j_ras = (0, 0, -1)
> k_ras = (0, 1, 0)
> writing to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz...
> fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/White-Matter++.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/notventricles.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> flip4fsl /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> INFO: input image orientation is LIA
> INFO: input image determinant is -1
> fslswapdim /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> fslorient -forceradiological /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz
> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2mni.mat -interp nearestneighbour
> fslstats -t /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi_snr.txt
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/White-Matter++.flt
> #-------------------------------------
> #@# Tensor fit Tue Aug 6 02:18:26 BST 2013
> dtifit -k /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz -m /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz -r /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvecs -b /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/bvals -o /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dtifit
> Image Exception : #22 :: ERROR: Could not open image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> #-------------------------------------
> #@# Priors Tue Aug 6 02:18:26 BST 2013
> /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_!
roi2.flt
.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
>
>
> cwd /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> cmdline /usr/local/freesurfer/bin/dmri_train --outdir /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.02ST.15264.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh!
.ccg_PP_
roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz --fa /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz --ncpts 5 --debug
> sysname Linux
> hostname wmen-dsoto3
> machine x86_64
> user dsoto
> Output directory: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni
> Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt
> Training subject directory list: /tmp/subj33.02ST.15264.txt
> Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk
> Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz
> Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0
> Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz
> Brain mask for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
> FA map for output subject: /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> Number of control points for initial spline: 5
> Exclude previously chosen center streamlines: 0
> Use truncated streamlines: 0
> Loading brain mask of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/aparc+aseg_mask.nii.gz
> Loading FA map of output subject from /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> niiRead(): error opening file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/mni/dtifit_FA.flt.nii.gz
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk
> INFO: Rejected 572 streamlines for straying off mask
> INFO: Rejected 89 streamlines for reversing direction
> INFO: Rejected 33 streamlines as length outliers
> INFO: Have 7738 total streamlines (min/mean/max length: 59/98/132)
> Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz
> Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz
> Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz
> Processing pathway 1 of 18...
> Matching streamline ends
> INFO: Have 4846 non-truncated streamlines (min/mean/max length: 60/99/132)
> INFO: Center of mass of start points: (97+/-3, 97+/-6, 38+/-12)
> INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 77+/-7)
> INFO: Center of mass of end points: (112+/-8, 107+/-9, 141+/-6)
> INFO: Split streamlines into 26 segments
> Computing path histograms
> INFO: Total streamline volume is 39274 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 111 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 95 94 26
> 102 105 55
> 113 110 78
> 115 106 116
> 115 107 138
> INFO: Distances between consecutive points are 32 26 38 22
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 17.678 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.flt.trk
> INFO: Rejected 441 streamlines for straying off mask
> INFO: Rejected 92 streamlines for reversing direction
> INFO: Rejected 30 streamlines as length outliers
> INFO: Have 8733 total streamlines (min/mean/max length: 56/98/138)
> Processing pathway 2 of 18...
> Matching streamline ends
> INFO: Have 5574 non-truncated streamlines (min/mean/max length: 58/98/138)
> INFO: Center of mass of start points: (82+/-3, 95+/-6, 40+/-14)
> INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 78+/-7)
> INFO: Center of mass of end points: (68+/-8, 106+/-11, 140+/-6)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 46198 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 111 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 81 92 30
> 77 104 62
> 65 110 82
> 66 107 112
> 71 110 143
> INFO: Distances between consecutive points are 34 24 30 32
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cst_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 19.176 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.flt.trk
> INFO: Rejected 19 streamlines for straying off mask
> INFO: Rejected 26 streamlines for reversing direction
> INFO: Rejected 24 streamlines as length outliers
> INFO: Have 3539 total streamlines (min/mean/max length: 54/91/142)
> Processing pathway 3 of 18...
> Matching streamline ends
> INFO: Have 1356 non-truncated streamlines (min/mean/max length: 59/99/142)
> INFO: Center of mass of start points: (134+/-8, 136+/-6, 42+/-9)
> INFO: Center of mass of midpoints: (132+/-4, 102+/-3, 60+/-5)
> INFO: Center of mass of end points: (114+/-14, 45+/-12, 71+/-14)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 39318 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 108 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 130 139 35
> 134 104 58
> 130 83 68
> 116 50 72
> 109 35 60
> INFO: Distances between consecutive points are 42 24 36 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.382 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.flt.trk
> INFO: Rejected 18 streamlines for straying off mask
> INFO: Rejected 20 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 2121 total streamlines (min/mean/max length: 52/92/132)
> Processing pathway 4 of 18...
> Matching streamline ends
> INFO: Have 951 non-truncated streamlines (min/mean/max length: 58/100/133)
> INFO: Center of mass of start points: (46+/-8, 140+/-6, 43+/-9)
> INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 58+/-4)
> INFO: Center of mass of end points: (65+/-12, 45+/-11, 73+/-11)
> INFO: Split streamlines into 25 segments
> Computing path histograms
> INFO: Total streamline volume is 28709 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 109 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 44 144 40
> 48 100 60
> 50 84 67
> 68 53 76
> 76 41 64
> INFO: Distances between consecutive points are 48 18 37 19
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ilf_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 11.356 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.flt.trk
> INFO: Rejected 67 streamlines for straying off mask
> INFO: Rejected 35 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 5192 total streamlines (min/mean/max length: 8/57/104)
> Processing pathway 5 of 18...
> Matching streamline ends
> INFO: Have 3532 non-truncated streamlines (min/mean/max length: 11/57/104)
> INFO: Center of mass of start points: (128+/-7, 144+/-4, 42+/-5)
> INFO: Center of mass of midpoints: (125+/-2, 125+/-2, 55+/-3)
> INFO: Center of mass of end points: (113+/-11, 152+/-17, 59+/-5)
> INFO: Split streamlines into 10 segments
> Computing path histograms
> INFO: Total streamline volume is 23343 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 71 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 124 144 40
> 128 128 47
> 125 126 59
> 109 151 62
> 107 168 58
> INFO: Distances between consecutive points are 18 13 30 18
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 6.691 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.flt.trk
> INFO: Rejected 107 streamlines for straying off mask
> INFO: Rejected 120 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 6694 total streamlines (min/mean/max length: 9/62/113)
> Processing pathway 6 of 18...
> Matching streamline ends
> INFO: Have 4323 non-truncated streamlines (min/mean/max length: 9/61/113)
> INFO: Center of mass of start points: (53+/-6, 145+/-4, 42+/-6)
> INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3)
> INFO: Center of mass of end points: (71+/-9, 160+/-16, 57+/-5)
> INFO: Split streamlines into 10 segments
> Computing path histograms
> INFO: Total streamline volume is 26122 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 71 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 52 145 44
> 53 129 49
> 59 133 59
> 73 153 61
> 76 175 55
> INFO: Distances between consecutive points are 17 12 24 23
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.unc_AS_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.203 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.flt.trk
> INFO: Rejected 2655 streamlines for straying off mask
> INFO: Rejected 231 streamlines for reversing direction
> INFO: Rejected 155 streamlines as length outliers
> INFO: Have 6734 total streamlines (min/mean/max length: 87/135/162)
> Processing pathway 7 of 18...
> Matching streamline ends
> INFO: Have 4802 non-truncated streamlines (min/mean/max length: 87/136/166)
> INFO: Center of mass of start points: (102+/-7, 38+/-9, 99+/-16)
> INFO: Center of mass of midpoints: (90+/-2, 90+/-3, 84+/-3)
> INFO: Center of mass of end points: (74+/-6, 39+/-10, 100+/-17)
> INFO: Split streamlines into 37 segments
> Computing path histograms
> INFO: Total streamline volume is 59210 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 107
> 116 58 86
> 91 91 84
> 62 64 87
> 72 38 111
> INFO: Distances between consecutive points are 33 41 40 37
> WARN: Could not find satisfactory control point fit - try 1
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 108
> 116 58 86
> 90 91 84
> 60 62 86
> 72 38 112
> INFO: Distances between consecutive points are 34 42 42 37
> WARN: Could not find satisfactory control point fit - try 2
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 61 86
> 89 91 84
> 61 60 86
> 72 39 112
> INFO: Distances between consecutive points are 35 40 42 35
> WARN: Could not find satisfactory control point fit - try 3
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 147 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 112
> 116 55 86
> 93 90 84
> 61 64 87
> 72 38 112
> INFO: Distances between consecutive points are 35 42 41 38
> WARN: Could not find satisfactory control point fit - try 4
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 112
> 116 56 86
> 93 90 84
> 61 65 87
> 72 38 112
> INFO: Distances between consecutive points are 35 41 41 38
> WARN: Could not find satisfactory control point fit - try 5
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 39 107
> 115 57 85
> 91 90 84
> 61 62 87
> 72 38 112
> INFO: Distances between consecutive points are 34 41 41 36
> WARN: Could not find satisfactory control point fit - try 6
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 107
> 115 60 86
> 88 90 85
> 61 59 86
> 72 39 115
> INFO: Distances between consecutive points are 34 40 41 37
> WARN: Could not find satisfactory control point fit - try 7
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 148 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 91 90 83
> 62 64 87
> 76 38 112
> INFO: Distances between consecutive points are 35 39 39 39
> WARN: Could not find satisfactory control point fit - try 8
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 39 103
> 114 61 85
> 89 90 84
> 61 63 87
> 71 40 111
> INFO: Distances between consecutive points are 32 38 39 35
> WARN: Could not find satisfactory control point fit - try 9
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 34 102
> 117 57 85
> 92 91 84
> 60 63 87
> 72 42 113
> INFO: Distances between consecutive points are 31 42 43 36
> WARN: Could not find satisfactory control point fit - try 10
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 57 85
> 93 91 84
> 60 65 87
> 72 43 113
> INFO: Distances between consecutive points are 32 42 42 36
> WARN: Could not find satisfactory control point fit - try 11
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 57 85
> 91 90 84
> 61 63 87
> 72 42 113
> INFO: Distances between consecutive points are 33 41 40 35
> WARN: Could not find satisfactory control point fit - try 12
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 59 85
> 91 91 84
> 60 65 87
> 71 40 111
> INFO: Distances between consecutive points are 33 41 41 36
> WARN: Could not find satisfactory control point fit - try 13
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 112 67 85
> 83 91 84
> 64 57 86
> 77 39 111
> INFO: Distances between consecutive points are 36 38 39 33
> WARN: Could not find satisfactory control point fit - try 14
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 33 102
> 115 59 84
> 90 91 83
> 62 62 87
> 73 39 111
> INFO: Distances between consecutive points are 35 41 41 35
> WARN: Could not find satisfactory control point fit - try 15
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 39 108
> 118 64 86
> 88 90 83
> 63 61 88
> 77 39 114
> INFO: Distances between consecutive points are 37 40 39 37
> WARN: Could not find satisfactory control point fit - try 16
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 150 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 34 104
> 117 60 88
> 92 90 83
> 60 66 92
> 79 41 103
> INFO: Distances between consecutive points are 36 39 41 33
> WARN: Could not find satisfactory control point fit - try 17
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 91 90 83
> 62 63 87
> 77 37 110
> INFO: Distances between consecutive points are 35 39 40 38
> WARN: Could not find satisfactory control point fit - try 18
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 148 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 66 85
> 84 91 84
> 64 58 86
> 78 39 112
> INFO: Distances between consecutive points are 35 38 39 35
> WARN: Could not find satisfactory control point fit - try 19
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 60 88
> 80 41 111
> INFO: Distances between consecutive points are 34 38 40 34
> WARN: Could not find satisfactory control point fit - try 20
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 33 102
> 117 57 85
> 93 91 84
> 60 64 87
> 71 40 111
> INFO: Distances between consecutive points are 32 42 43 36
> WARN: Could not find satisfactory control point fit - try 21
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 37 105
> 117 62 89
> 91 90 83
> 60 67 92
> 77 41 103
> INFO: Distances between consecutive points are 35 39 40 33
> WARN: Could not find satisfactory control point fit - try 22
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 149 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 61 86
> 90 90 83
> 63 63 87
> 78 38 112
> INFO: Distances between consecutive points are 35 40 38 38
> WARN: Could not find satisfactory control point fit - try 23
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 60 85
> 89 90 85
> 60 61 87
> 72 42 113
> INFO: Distances between consecutive points are 35 40 41 34
> WARN: Could not find satisfactory control point fit - try 24
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 40 105
> 115 61 87
> 88 92 85
> 62 62 89
> 70 36 100
> INFO: Distances between consecutive points are 33 41 40 29
> WARN: Could not find satisfactory control point fit - try 25
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 117 59 88
> 96 88 84
> 63 71 88
> 71 38 97
> INFO: Distances between consecutive points are 36 36 37 35
> WARN: Could not find satisfactory control point fit - try 26
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 107
> 115 58 85
> 88 90 85
> 60 61 87
> 71 41 113
> INFO: Distances between consecutive points are 34 42 40 35
> WARN: Could not find satisfactory control point fit - try 27
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 107
> 115 60 87
> 90 91 85
> 62 63 91
> 78 41 110
> INFO: Distances between consecutive points are 35 40 40 33
> WARN: Could not find satisfactory control point fit - try 28
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 152 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 43 108
> 113 62 86
> 88 93 84
> 63 62 89
> 80 42 112
> INFO: Distances between consecutive points are 34 40 40 35
> WARN: Could not find satisfactory control point fit - try 29
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 108
> 114 62 88
> 88 91 85
> 62 61 90
> 78 42 110
> INFO: Distances between consecutive points are 35 39 40 32
> WARN: Could not find satisfactory control point fit - try 30
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 66 85
> 85 92 84
> 63 59 87
> 75 39 107
> INFO: Distances between consecutive points are 35 38 40 31
> WARN: Could not find satisfactory control point fit - try 31
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 112 67 85
> 83 91 84
> 64 57 86
> 77 39 110
> INFO: Distances between consecutive points are 35 38 39 33
> WARN: Could not find satisfactory control point fit - try 32
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 42 112
> 118 61 89
> 91 89 84
> 62 63 88
> 78 39 114
> INFO: Distances between consecutive points are 33 39 39 39
> WARN: Could not find satisfactory control point fit - try 33
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 35 99
> 117 60 86
> 92 91 84
> 60 66 87
> 70 39 106
> INFO: Distances between consecutive points are 32 40 41 34
> WARN: Could not find satisfactory control point fit - try 34
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 39 100
> 114 63 84
> 86 90 85
> 61 60 87
> 72 39 115
> INFO: Distances between consecutive points are 33 39 39 37
> WARN: Could not find satisfactory control point fit - try 35
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 147 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 34 105
> 117 60 88
> 92 90 83
> 60 68 92
> 79 41 104
> INFO: Distances between consecutive points are 36 39 40 35
> WARN: Could not find satisfactory control point fit - try 36
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 36 104
> 117 62 89
> 90 91 83
> 59 65 92
> 79 42 103
> INFO: Distances between consecutive points are 36 40 41 32
> WARN: Could not find satisfactory control point fit - try 37
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 34 101
> 114 58 85
> 93 90 85
> 64 65 89
> 76 38 109
> INFO: Distances between consecutive points are 31 38 38 36
> WARN: Could not find satisfactory control point fit - try 38
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 35 99
> 117 60 86
> 93 91 85
> 60 67 87
> 69 38 106
> INFO: Distances between consecutive points are 31 39 41 36
> WARN: Could not find satisfactory control point fit - try 39
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 107 33 102
> 117 57 85
> 94 91 85
> 61 68 87
> 70 39 106
> INFO: Distances between consecutive points are 31 41 40 36
> WARN: Could not find satisfactory control point fit - try 40
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 34 99
> 117 61 86
> 91 91 84
> 60 65 87
> 70 39 107
> INFO: Distances between consecutive points are 33 40 41 34
> WARN: Could not find satisfactory control point fit - try 41
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 145 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 42 107
> 112 65 86
> 84 91 84
> 64 59 86
> 78 40 111
> INFO: Distances between consecutive points are 34 38 38 34
> WARN: Could not find satisfactory control point fit - try 42
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 101 41 115
> 116 56 87
> 98 88 84
> 64 73 88
> 71 38 97
> INFO: Distances between consecutive points are 35 37 37 37
> WARN: Could not find satisfactory control point fit - try 43
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 35 100
> 114 62 84
> 88 90 84
> 62 60 87
> 73 42 112
> INFO: Distances between consecutive points are 35 38 40 33
> WARN: Could not find satisfactory control point fit - try 44
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 62 89
> 90 89 84
> 64 62 88
> 79 39 114
> INFO: Distances between consecutive points are 34 39 38 38
> WARN: Could not find satisfactory control point fit - try 45
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 135 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 117 60 87
> 96 90 84
> 64 72 87
> 72 38 97
> INFO: Distances between consecutive points are 34 37 37 36
> WARN: Could not find satisfactory control point fit - try 46
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 62 89
> 89 89 83
> 64 60 88
> 78 39 114
> INFO: Distances between consecutive points are 34 40 39 36
> WARN: Could not find satisfactory control point fit - try 47
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 41 106
> 113 63 87
> 87 92 84
> 62 63 89
> 70 36 100
> INFO: Distances between consecutive points are 33 39 39 30
> WARN: Could not find satisfactory control point fit - try 48
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 41 107
> 113 64 87
> 87 91 84
> 62 61 89
> 70 36 100
> INFO: Distances between consecutive points are 34 38 39 28
> WARN: Could not find satisfactory control point fit - try 49
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 42 107
> 113 62 86
> 89 92 84
> 62 65 90
> 70 36 100
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 50
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 116 57 88
> 98 88 84
> 66 74 86
> 72 38 97
> INFO: Distances between consecutive points are 34 36 35 38
> WARN: Could not find satisfactory control point fit - try 51
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 61 88
> 77 38 106
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 52
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 39 108
> 117 60 85
> 96 90 83
> 64 72 87
> 72 38 97
> INFO: Distances between consecutive points are 35 37 37 36
> WARN: Could not find satisfactory control point fit - try 53
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 112 67 85
> 82 90 84
> 65 57 84
> 78 39 112
> INFO: Distances between consecutive points are 34 38 37 36
> WARN: Could not find satisfactory control point fit - try 54
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 61 84
> 89 90 84
> 62 64 87
> 72 40 111
> INFO: Distances between consecutive points are 35 38 38 35
> WARN: Could not find satisfactory control point fit - try 55
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 130 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 42 107
> 118 63 89
> 93 90 84
> 62 69 88
> 71 37 97
> INFO: Distances between consecutive points are 31 37 38 34
> WARN: Could not find satisfactory control point fit - try 56
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 41 106
> 112 66 87
> 85 91 84
> 63 59 89
> 79 41 110
> INFO: Distances between consecutive points are 34 37 39 32
> WARN: Could not find satisfactory control point fit - try 57
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 66 86
> 85 92 84
> 63 60 87
> 77 38 106
> INFO: Distances between consecutive points are 35 38 39 32
> WARN: Could not find satisfactory control point fit - try 58
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 40 106
> 114 63 89
> 89 92 85
> 62 66 91
> 70 36 100
> INFO: Distances between consecutive points are 33 38 38 32
> WARN: Could not find satisfactory control point fit - try 59
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 38 93
> 113 68 87
> 86 91 85
> 60 60 86
> 72 38 112
> INFO: Distances between consecutive points are 32 36 40 36
> WARN: Could not find satisfactory control point fit - try 60
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 40 107
> 113 64 89
> 87 91 85
> 62 61 90
> 78 41 110
> INFO: Distances between consecutive points are 34 38 39 32
> WARN: Could not find satisfactory control point fit - try 61
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 128 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 43 107
> 118 61 88
> 95 89 84
> 63 72 88
> 71 37 97
> INFO: Distances between consecutive points are 29 36 36 37
> WARN: Could not find satisfactory control point fit - try 62
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 113 65 86
> 87 93 84
> 63 62 87
> 77 37 105
> INFO: Distances between consecutive points are 34 38 39 34
> WARN: Could not find satisfactory control point fit - try 63
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 60 85
> 92 88 83
> 60 68 85
> 72 35 102
> INFO: Distances between consecutive points are 35 40 38 39
> WARN: Could not find satisfactory control point fit - try 64
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 118 60 88
> 91 89 84
> 64 61 88
> 78 39 114
> INFO: Distances between consecutive points are 34 40 39 37
> WARN: Could not find satisfactory control point fit - try 65
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 63 86
> 89 88 83
> 62 63 85
> 75 35 108
> INFO: Distances between consecutive points are 37 40 37 38
> WARN: Could not find satisfactory control point fit - try 66
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 62 86
> 90 88 83
> 61 65 85
> 74 35 106
> INFO: Distances between consecutive points are 36 40 37 39
> WARN: Could not find satisfactory control point fit - try 67
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 32 101
> 114 59 83
> 90 91 84
> 62 62 87
> 72 40 111
> INFO: Distances between consecutive points are 35 40 40 34
> WARN: Could not find satisfactory control point fit - try 68
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 42 107
> 112 65 86
> 86 92 84
> 63 62 88
> 77 38 108
> INFO: Distances between consecutive points are 34 38 38 34
> WARN: Could not find satisfactory control point fit - try 69
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 127 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 40 100
> 120 66 87
> 89 90 84
> 59 68 85
> 71 35 102
> INFO: Distances between consecutive points are 33 39 37 39
> WARN: Could not find satisfactory control point fit - try 70
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 127 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 40 100
> 120 66 87
> 89 90 84
> 59 68 85
> 71 35 102
> INFO: Distances between consecutive points are 33 39 37 39
> WARN: Could not find satisfactory control point fit - try 71
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 43 107
> 113 64 86
> 89 93 83
> 64 66 90
> 71 36 100
> INFO: Distances between consecutive points are 34 38 37 32
> WARN: Could not find satisfactory control point fit - try 72
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 61 86
> 91 88 83
> 61 67 85
> 74 35 106
> INFO: Distances between consecutive points are 35 40 37 40
> WARN: Could not find satisfactory control point fit - try 73
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 45 114
> 115 62 88
> 89 91 84
> 64 63 87
> 75 34 104
> INFO: Distances between consecutive points are 35 39 38 35
> WARN: Could not find satisfactory control point fit - try 74
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 43 107
> 113 65 86
> 86 92 84
> 63 61 87
> 77 38 106
> INFO: Distances between consecutive points are 34 38 39 33
> WARN: Could not find satisfactory control point fit - try 75
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 38 111
> 119 61 87
> 91 90 83
> 59 67 86
> 71 35 102
> INFO: Distances between consecutive points are 38 41 40 38
> WARN: Could not find satisfactory control point fit - try 76
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 142 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 112
> 116 59 85
> 92 88 82
> 63 66 84
> 75 35 106
> INFO: Distances between consecutive points are 39 38 36 40
> WARN: Could not find satisfactory control point fit - try 77
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 133 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 62 84
> 88 90 84
> 61 62 87
> 72 41 110
> INFO: Distances between consecutive points are 36 38 39 33
> WARN: Could not find satisfactory control point fit - try 78
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 112
> 117 59 88
> 96 89 84
> 63 72 88
> 71 38 97
> INFO: Distances between consecutive points are 33 37 37 36
> WARN: Could not find satisfactory control point fit - try 79
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 150 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 41 114
> 117 60 85
> 90 90 82
> 64 63 87
> 77 38 110
> INFO: Distances between consecutive points are 39 40 38 36
> WARN: Could not find satisfactory control point fit - try 80
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 139 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 111 68 85
> 82 90 84
> 64 59 85
> 79 40 110
> INFO: Distances between consecutive points are 34 36 36 35
> WARN: Could not find satisfactory control point fit - try 81
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 44 105
> 111 68 85
> 83 90 84
> 64 59 85
> 80 42 111
> INFO: Distances between consecutive points are 34 36 36 35
> WARN: Could not find satisfactory control point fit - try 82
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 100 33 102
> 114 58 83
> 91 90 84
> 63 65 87
> 73 42 113
> INFO: Distances between consecutive points are 34 39 38 36
> WARN: Could not find satisfactory control point fit - try 83
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 137 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 99 34 100
> 114 59 83
> 90 90 84
> 62 60 87
> 73 42 113
> INFO: Distances between consecutive points are 34 39 41 33
> WARN: Could not find satisfactory control point fit - try 84
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 146 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 112
> 116 58 85
> 93 88 82
> 63 67 84
> 75 35 106
> INFO: Distances between consecutive points are 39 38 37 41
> WARN: Could not find satisfactory control point fit - try 85
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 38 92
> 113 67 84
> 85 90 84
> 62 60 86
> 73 38 111
> INFO: Distances between consecutive points are 32 36 38 35
> WARN: Could not find satisfactory control point fit - try 86
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 140 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 120 62 86
> 90 88 83
> 61 64 85
> 75 35 108
> INFO: Distances between consecutive points are 36 40 38 40
> WARN: Could not find satisfactory control point fit - try 87
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 40 112
> 116 58 85
> 94 88 82
> 63 67 84
> 75 35 106
> INFO: Distances between consecutive points are 38 37 37 41
> WARN: Could not find satisfactory control point fit - try 88
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 134 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 119 60 85
> 93 88 83
> 62 69 85
> 76 37 104
> INFO: Distances between consecutive points are 34 38 36 40
> WARN: Could not find satisfactory control point fit - try 89
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 138 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 102 36 100
> 117 62 86
> 92 91 86
> 62 67 89
> 78 41 107
> INFO: Distances between consecutive points are 33 38 39 35
> WARN: Could not find satisfactory control point fit - try 90
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 132 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 41 113
> 116 57 88
> 97 88 84
> 65 73 87
> 71 38 97
> INFO: Distances between consecutive points are 32 37 35 37
> WARN: Could not find satisfactory control point fit - try 91
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 136 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 104 33 100
> 119 60 85
> 95 88 83
> 62 70 85
> 75 36 105
> INFO: Distances between consecutive points are 34 37 38 42
> WARN: Could not find satisfactory control point fit - try 92
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 130 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 42 107
> 117 62 86
> 94 90 83
> 64 72 87
> 72 40 96
> INFO: Distances between consecutive points are 31 36 35 34
> WARN: Could not find satisfactory control point fit - try 93
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 98 45 114
> 114 62 88
> 90 89 84
> 64 65 87
> 74 33 101
> INFO: Distances between consecutive points are 35 36 36 36
> WARN: Could not find satisfactory control point fit - try 94
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 141 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 37 103
> 114 68 86
> 85 91 84
> 64 62 86
> 74 33 101
> INFO: Distances between consecutive points are 36 37 36 34
> WARN: Could not find satisfactory control point fit - try 95
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 144 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 96 39 112
> 116 59 85
> 93 89 81
> 63 68 84
> 76 35 106
> INFO: Distances between consecutive points are 39 38 37 42
> WARN: Could not find satisfactory control point fit - try 96
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 151 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 106 41 112
> 117 60 84
> 92 90 82
> 64 66 86
> 77 38 110
> INFO: Distances between consecutive points are 36 39 37 39
> WARN: Could not find satisfactory control point fit - try 97
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 133 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 105 39 106
> 120 64 87
> 89 90 84
> 59 67 85
> 71 35 102
> INFO: Distances between consecutive points are 35 41 38 38
> WARN: Could not find satisfactory control point fit - try 98
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 143 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 97 35 99
> 114 61 81
> 89 91 83
> 62 61 86
> 74 40 112
> INFO: Distances between consecutive points are 36 39 40 36
> WARN: Could not find satisfactory control point fit - try 99
> Finding center streamline
> INFO: Step is 7 voxels
> INFO: Length of center streamline is 129 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> WARN: Defaulting to equidistant control points
> INFO: Selected control points are
> 103 39 92
> 111 69 84
> 83 89 85
> 61 59 86
> 72 39 112
> INFO: Distances between consecutive points are 32 34 37 35
> WARN: Could not find satisfactory control point fit - try 100
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fmajor_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 2212.85 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.flt.trk
> INFO: Rejected 839 streamlines for straying off mask
> INFO: Rejected 304 streamlines for reversing direction
> INFO: Rejected 45 streamlines as length outliers
> INFO: Have 26439 total streamlines (min/mean/max length: 51/91/119)
> Processing pathway 8 of 18...
> Matching streamline ends
> INFO: Have 16083 non-truncated streamlines (min/mean/max length: 53/90/119)
> INFO: Center of mass of start points: (103+/-5, 187+/-7, 74+/-12)
> INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3)
> INFO: Center of mass of end points: (78+/-5, 188+/-7, 75+/-11)
> INFO: Split streamlines into 23 segments
> Computing path histograms
> INFO: Total streamline volume is 67506 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 104 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 98 193 75
> 108 164 69
> 88 150 75
> 73 168 69
> 83 193 81
> INFO: Distances between consecutive points are 31 25 24 29
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/fminor_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 57.864 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.flt.trk
> INFO: Rejected 83 streamlines for straying off mask
> INFO: Rejected 6 streamlines for reversing direction
> INFO: Rejected 47 streamlines as length outliers
> INFO: Have 13443 total streamlines (min/mean/max length: 30/61/92)
> Processing pathway 9 of 18...
> Matching streamline ends
> INFO: Have 4721 non-truncated streamlines (min/mean/max length: 37/69/94)
> INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13)
> INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 79+/-5)
> INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6)
> INFO: Split streamlines into 17 segments
> Computing path histograms
> INFO: Total streamline volume is 42884 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 72 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 107 187 71
> 113 167 73
> 111 158 74
> 107 138 80
> 95 113 81
> INFO: Distances between consecutive points are 21 9 21 28
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 9.28 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.flt.trk
> INFO: Rejected 109 streamlines for straying off mask
> INFO: Rejected 20 streamlines for reversing direction
> INFO: Rejected 33 streamlines as length outliers
> INFO: Have 11850 total streamlines (min/mean/max length: 31/64/93)
> Processing pathway 10 of 18...
> Matching streamline ends
> INFO: Have 4582 non-truncated streamlines (min/mean/max length: 42/70/92)
> INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12)
> INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5)
> INFO: Center of mass of end points: (82+/-2, 115+/-4, 78+/-6)
> INFO: Split streamlines into 18 segments
> Computing path histograms
> INFO: Total streamline volume is 38520 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 81 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 69 194 85
> 71 186 82
> 68 157 78
> 81 115 78
> 82 111 78
> INFO: Distances between consecutive points are 9 29 44 4
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.atr_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.144 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.flt.trk
> INFO: Rejected 18 streamlines for straying off mask
> INFO: Rejected 3 streamlines for reversing direction
> INFO: Rejected 6 streamlines as length outliers
> INFO: Have 5251 total streamlines (min/mean/max length: 27/68/134)
> Processing pathway 11 of 18...
> Matching streamline ends
> INFO: Have 1537 non-truncated streamlines (min/mean/max length: 55/86/134)
> INFO: Center of mass of start points: (99+/-4, 80+/-8, 102+/-7)
> INFO: Center of mass of midpoints: (96+/-1, 125+/-2, 105+/-2)
> INFO: Center of mass of end points: (97+/-5, 163+/-7, 86+/-8)
> INFO: Split streamlines into 22 segments
> Computing path histograms
> INFO: Total streamline volume is 20097 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 93 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 101 74 96
> 101 81 101
> 96 112 105
> 97 139 100
> 97 163 79
> INFO: Distances between consecutive points are 9 32 27 32
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.013 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.flt.trk
> INFO: Rejected 43 streamlines for straying off mask
> INFO: Rejected 9 streamlines for reversing direction
> INFO: Rejected 26 streamlines as length outliers
> INFO: Have 4344 total streamlines (min/mean/max length: 29/66/124)
> Processing pathway 12 of 18...
> Matching streamline ends
> INFO: Have 1012 non-truncated streamlines (min/mean/max length: 53/83/124)
> INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9)
> INFO: Center of mass of midpoints: (83+/-1, 126+/-2, 105+/-2)
> INFO: Center of mass of end points: (83+/-4, 161+/-6, 89+/-7)
> INFO: Split streamlines into 22 segments
> Computing path histograms
> INFO: Total streamline volume is 18871 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 4 voxels
> INFO: Length of center streamline is 81 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 81 82 98
> 81 98 104
> 83 128 104
> 82 160 90
> 86 164 93
> INFO: Distances between consecutive points are 17 30 35 6
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.ccg_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 6.164 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.flt.trk
> INFO: Rejected 52 streamlines for straying off mask
> INFO: Rejected 62 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 4147 total streamlines (min/mean/max length: 3/45/95)
> Processing pathway 13 of 18...
> Matching streamline ends
> INFO: Have 1243 non-truncated streamlines (min/mean/max length: 19/52/92)
> INFO: Center of mass of start points: (109+/-6, 81+/-12, 74+/-12)
> INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5)
> INFO: Center of mass of end points: (115+/-5, 121+/-14, 43+/-11)
> INFO: Split streamlines into 12 segments
> Computing path histograms
> INFO: Total streamline volume is 17882 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 65 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 104 74 79
> 105 85 70
> 114 106 49
> 117 118 44
> 118 133 39
> INFO: Distances between consecutive points are 14 31 13 16
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 4.921 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.flt.trk
> INFO: Rejected 491 streamlines for straying off mask
> INFO: Rejected 76 streamlines for reversing direction
> INFO: Rejected 0 streamlines as length outliers
> INFO: Have 3669 total streamlines (min/mean/max length: 12/43/99)
> Processing pathway 14 of 18...
> Matching streamline ends
> INFO: Have 1123 non-truncated streamlines (min/mean/max length: 27/54/99)
> INFO: Center of mass of start points: (70+/-5, 80+/-7, 77+/-8)
> INFO: Center of mass of midpoints: (67+/-2, 100+/-2, 56+/-2)
> INFO: Center of mass of end points: (63+/-4, 126+/-7, 39+/-4)
> INFO: Split streamlines into 13 segments
> Computing path histograms
> INFO: Total streamline volume is 15900 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 58 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 74 76 85
> 65 107 47
> 61 115 43
> 61 119 42
> 64 128 39
> INFO: Distances between consecutive points are 50 10 4 10
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.cab_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 3.905 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.flt.trk
> INFO: Rejected 181 streamlines for straying off mask
> INFO: Rejected 652 streamlines for reversing direction
> INFO: Rejected 40 streamlines as length outliers
> INFO: Have 9394 total streamlines (min/mean/max length: 21/59/102)
> Processing pathway 15 of 18...
> Matching streamline ends
> INFO: Have 3795 non-truncated streamlines (min/mean/max length: 28/65/103)
> INFO: Center of mass of start points: (145+/-6, 128+/-5, 97+/-11)
> INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-3)
> INFO: Center of mass of end points: (142+/-10, 84+/-10, 110+/-12)
> INFO: Split streamlines into 14 segments
> Computing path histograms
> INFO: Total streamline volume is 50360 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 67 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 150 131 96
> 134 121 97
> 128 98 103
> 131 85 104
> 146 86 115
> INFO: Distances between consecutive points are 19 25 13 19
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 7.66 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.flt.trk
> INFO: Rejected 311 streamlines for straying off mask
> INFO: Rejected 458 streamlines for reversing direction
> INFO: Rejected 95 streamlines as length outliers
> INFO: Have 14758 total streamlines (min/mean/max length: 19/64/98)
> Processing pathway 16 of 18...
> Matching streamline ends
> INFO: Have 6938 non-truncated streamlines (min/mean/max length: 27/69/101)
> INFO: Center of mass of start points: (34+/-7, 131+/-6, 97+/-12)
> INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 102+/-3)
> INFO: Center of mass of end points: (39+/-9, 81+/-11, 113+/-11)
> INFO: Split streamlines into 15 segments
> Computing path histograms
> INFO: Total streamline volume is 65106 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 3 voxels
> INFO: Length of center streamline is 75 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 31 133 95
> 50 121 100
> 53 100 105
> 53 83 102
> 42 73 113
> INFO: Distances between consecutive points are 23 22 17 18
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slfp_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 16.605 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.flt.trk
> INFO: Rejected 353 streamlines for straying off mask
> INFO: Rejected 59 streamlines for reversing direction
> INFO: Rejected 77 streamlines as length outliers
> INFO: Have 7405 total streamlines (min/mean/max length: 34/90/133)
> Processing pathway 17 of 18...
> Matching streamline ends
> INFO: Have 4400 non-truncated streamlines (min/mean/max length: 38/92/133)
> INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10)
> INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3)
> INFO: Center of mass of end points: (147+/-7, 83+/-14, 66+/-9)
> INFO: Split streamlines into 23 segments
> Computing path histograms
> INFO: Total streamline volume is 45630 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 94 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 148 135 97
> 130 120 98
> 125 87 98
> 135 80 70
> 149 73 70
> INFO: Distances between consecutive points are 23 33 31 16
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/lh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 10.592 sec.
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.flt.trk
> Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.flt.nii.gz
> Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.flt.nii.gz
> Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.flt.trk
> INFO: Rejected 61 streamlines for straying off mask
> INFO: Rejected 12 streamlines for reversing direction
> INFO: Rejected 44 streamlines as length outliers
> INFO: Have 3025 total streamlines (min/mean/max length: 55/90/132)
> Processing pathway 18 of 18...
> Matching streamline ends
> INFO: Have 1739 non-truncated streamlines (min/mean/max length: 57/92/132)
> INFO: Center of mass of start points: (40+/-9, 136+/-9, 96+/-15)
> INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3)
> INFO: Center of mass of end points: (31+/-6, 81+/-10, 72+/-8)
> INFO: Split streamlines into 24 segments
> Computing path histograms
> INFO: Total streamline volume is 31157 voxels
> Computing prior on underlying anatomy (non-truncated streamlines only)
> Computing prior on curvature (non-truncated streamlines only)
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 95 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 33 139 102
> 52 127 99
> 55 93 101
> 46 81 79
> 29 71 78
> INFO: Distances between consecutive points are 23 34 27 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.246 sec.
> dmri_train done
> #-------------------------------------
> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 08:19:08 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 6936780 58966460 0 372776 5055680
> -/+ buffers/cache: 1508324 64394916
> Swap: 67032060 1816772 65215288
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
> WARN: Running FSL's bedbost locally - this might take a while
> WARN: It is recommended to run this step on a cluster
> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
> dsoto@wmen-dsoto3:~/Documents/fmri/rsdtianawmgui/02ST/scripts$
> Finding center streamline
> INFO: Step is 5 voxels
> INFO: Length of center streamline is 95 voxels
> Selecting 5 points on center streamline
> INFO: Step is 4 voxels
> INFO: Selected control points are
> 33 139 102
> 52 127 99
> 55 93 101
> 46 81 79
> 29 71 78
> INFO: Distances between consecutive points are 23 34 27 20
> Writing output files to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_*
> Writing spline volume to /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/mni/rh.slft_PP_avg33_mni_flt_cpts_5.nii.gz
> Done in 8.246 sec.
> dmri_train done
> #-------------------------------------
> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>
>
> New invocation of trac-all
>
>
> Tue Aug 6 08:19:08 BST 2013
> /home/dsoto/Documents/fmri/rsdtianawmgui/37OF/diffree
> /usr/local/freesurfer/bin/trac-all
> -c /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/tracula02ST.txt -bedp
> Subject 02ST
> SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
> FREESURFER_HOME /usr/local/freesurfer
> Actual FREESURFER_HOME /usr/local/freesurfer
> build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
> dsoto
> wmen-dsoto3
> Linux wmen-dsoto3 3.2.0-49-generic #75-Ubuntu SMP Tue Jun 18 17:39:32 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
> cputime unlimited
> filesize unlimited
> datasize unlimited
> stacksize 8192 kbytes
> coredumpsize 0 kbytes
> memoryuse unlimited
> vmemoryuse unlimited
> descriptors 1024
> memorylocked 64 kbytes
> maxproc 514727
> maxlocks unlimited
> maxsignal 514727
> maxmessage 819200
> maxnice 0
> maxrtprio 0
> maxrttime unlimited
>
> total used free shared buffers cached
> Mem: 65903240 6936780 58966460 0 372776 5055680
> -/+ buffers/cache: 1508324 64394916
> Swap: 67032060 1816772 65215288
>
> ########################################
> Program versions:
> $Id: trac-all,v 1.22.2.6 2011/05/24 06:49:09 ayendiki Exp $
> mri_convert --all-info
> ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> FLIRT version 6.0
> $Id: bbregister,v 1.49 2011/03/06 23:38:41 greve Exp $
> $Id: mri_cvs_register,v 1.15.2.8 2011/05/23 12:37:47 lzollei Exp $
> ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/06-07:19:08-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: User: dsoto Machine: wmen-dsoto3 Platform: Linux PlatformVersion: 3.2.0-49-generic CompilerName: GCC CompilerVersion: 30400
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask.nii.gz
> ln -sf /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/dwi.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/data.nii.gz
> WARN: Running FSL's bedbost locally - this might take a while
> WARN: It is recommended to run this step on a cluster
> bedpostx_seychelles /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> subjectdir is /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri
> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found
>
>
>
>
>
> http://www1.imperial.ac.uk/medicine/people/d.soto/
>
> ________________________________________
> From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
> Sent: 06 August 2013 14:30
> To: Soto, David
> Cc: freesurfer(a)nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] trac-all inquiry
>
> Hi David - Can you please send your entire log file (from
> scripts/trac-all.log)? It's hard to tell what caused the errors without
> looking at the whole thing.
>
> Thanks,
> a.y
>
> On Tue, 6 Aug 2013, Soto, David wrote:
>
>> thanks Anastasia, I have some problems however- could you help please?
>>
>> as said, I am not using the DICOMS, my diffusion data has been converted to nii and then to mnc
>> my config file mostly accepts the defaults, and is simple as follows. There is a folder
>> 'diffree' which contains the dmri config file, the becs and bvals and the mnc difffusion file
>> $$$$$$$$
>> setenv SUBJECTS_DIR /home/dsoto/Documents/fmri/rsdtianawmgui
>> set dtroot = /home/dsoto/Documents/fmri/rsdtianawmgui
>> set subjlist = (02ST)
>> set runlist = (1)
>> set dcmroot = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree
>> set dcmlist = (diffdata.mnc)
>> set bvecfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvecs_t
>> set bvalfile = /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/diffree/bvals_t
>> set mnitemp = /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain
>> $$$$$$$$
>>
>> When i run
>> trac-all -c tracula02ST.txt -prep
>> I get some errors such as
>>
>> 1. fslmaths /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz -Tmean /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz
>> Cannot open volume /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb for reading!
>> bet /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -m -f 0.3
>>
>> Error: input image /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb not valid
>>
>> mv -f /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dlabel/diff
>> mv: cannot stat `/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_mask.nii.gz': No such file or directory
>>
>> flirt -in /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain.nii.gz -ref /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/brain_anat.nii.gz -out /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain_anat.flt.nii.gz -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat -cost mutualinfo
>>
>> Image Exception : #22 :: ERROR: Could not open image
>>
>> /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/lowb_brain
>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>> Abort (core dumped)
>>
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anat.flt.mat
>> Cannot read input-matrix
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat -concat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2anat.mat
>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anat2diff.flt.mat
>> Cannot read concat-matrix
>> convert_xfm -omat /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/diff2anatorig.flt.mat -inverse /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>> Could not open matrix file /home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/xfms/anatorig2diff.flt.mat
>> Cannot read input-matrix
>>
>>
>> Intriguinly, the script completes with the message
>>>>> trac-preproc finished without error at Tue Aug 6 03:02:08 BST 2013
>>
>> HOWEVER, when I attempt the next step
>> trac-all -c tracula02ST.txt -bedp
>> it aborts saying "/home/dsoto/Documents/fmri/rsdtianawmgui/02ST/dmri/nodif_brain_mask not found"
>>
>> I am running FSL 5.0.4 under Ubuntu 12.04
>>
>> cheers
>> ds
>>
>>
>> http://www1.imperial.ac.uk/medicine/people/d.soto/
>>
>> ________________________________________
>> From: Anastasia Yendiki [ayendiki(a)nmr.mgh.harvard.edu]
>> Sent: 02 August 2013 19:15
>> To: Soto, David
>> Cc: freesurfer(a)nmr.mgh.harvard.edu
>> Subject: Re: [Freesurfer] trac-all inquiry
>>
>> Hi David - You need to run each of the steps (-prep, -bedp, -path)
>> separately. You can't run them all at the same time. See tutorial:
>> http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/RunningTracula
>>
>> Hope this helps,
>> a.y
>>
>> On Fri, 2 Aug 2013, David Soto wrote:
>>
>>> Hi,
>>>
>>> I have successfully run recon-all in my dataset
>>> and now am attempting to use trac-all on my diffusion data
>>> obtained on a Siemens scanner.
>>>
>>> Diffusion dicoms were transformed to .nii using MRIConverter
>>> and then to .mnc using
>>>
>>> nii2mnc output.nii output_t.mnc.
>>>
>>> I am trying to run trac-all on a single subject and for this I
>>> have created the configuration file attached (tracula02ST)
>>>
>>> As you can see the SUBJECTS_DIR is /home/dsoto/Documents/fmri/rsdtianawmgui
>>> and within each subject the T1 serving as input for recon-all are in
>>> mri/orig
>>>
>>> while the diffusion images are in a folder call diffdata (named output_t.mnc)
>>> which also contains the bvecs and bvals files, which were transposed and
>>> organised
>>> according to the tutorial (named as bvecs_t.txt and bvals_t.txt)
>>>
>>> When I run:
>>> trac-all -c tracula02ST.txt
>>>
>>> I get:
>>> ERROR: no analysis step (-{prep,bedp,path}) has been selected
>>>
>>> THEN I run:
>>> trac-all -prep -bedp -path -c tracula02ST.txt which runs for 5 seconds or so
>>> and then gives the long output text below with an error message.
>>>
>>> Segmentation fault (core dumped)
>>> foreach: No match.
>>>
>>> The trac-all.log is attached also.
>>>
>>> Could you please help?
>>>
>>> Cheers
>>>
>>> David
>>>
>>>
>>>
>>
>>
>> The information in this e-mail is intended only for the person to whom it is
>> addressed. If you believe this e-mail was sent to you in error and the e-mail
>> contains patient information, please contact the Partners Compliance HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you in error
>> but does not contain patient information, please contact the sender and properly
>> dispose of the e-mail.
>>
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer(a)nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>>
>
>
>
2
1
Hello Amir,
According to the log file you've attached, recon-all finished to
completion without any errors. Are you sure you are encountering a
memory error? If so, why?
-Zeke
On 07/24/2013 11:28 AM, amirhossein manzouri wrote:
> Kindly find attached the recon-all.log
>
>
> On Wed, Jul 24, 2013 at 4:50 PM, Z K <zkaufman(a)nmr.mgh.harvard.edu
> <mailto:zkaufman@nmr.mgh.harvard.edu>> wrote:
>
> Hello Amir,
>
> Thanks for that... could you also please provide the recon-all.log
> file? It will be located in
> $SUBJECT_DIR/subject_name/__scripts/recon-all.log
>
> -Zeke
>
>
> On 07/24/2013 03:01 AM, amirhossein manzouri wrote:
>
> Hi,
> The content is :
> freesurfer-Darwin-snowleopard-__i686-stable-pub-v5.3.0
> Can it help?
>
>
> On Mon, Jul 22, 2013 at 10:31 PM, Z K
> <zkaufman(a)nmr.mgh.harvard.edu <mailto:zkaufman@nmr.mgh.harvard.edu>
> <mailto:zkaufman@nmr.mgh.__harvard.edu
> <mailto:zkaufman@nmr.mgh.harvard.edu>>> wrote:
>
> Hello Amirhossein,
>
> Can you please provide me with the contents of
> build-stamp.txt in
> the /Applications/freesurfer directory?
>
> -Zeke
>
>
> On 07/22/2013 04:23 PM, amirhossein manzouri wrote:
>
> Hi,
> Yes I am getting the memory error with version 5.3,
> exactly the
> one that
> is reported in this link:
> https://mail.nmr.mgh.harvard.____edu/pipermail//freesurfer/____2011-July/01…
>
>
> <https://mail.nmr.mgh.harvard.__edu/pipermail//freesurfer/__2011-July/019392…
> <https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-July/019392.html>>
> Thanks,
>
>
> On Mon, Jul 22, 2013 at 8:15 PM, Anastasia Yendiki
> <ayendiki(a)nmr.mgh.harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>
> <mailto:ayendiki@nmr.mgh.
> <mailto:ayendiki@nmr.mgh.>__har__vard.edu <http://harvard.edu>
>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>>> wrote:
>
>
> Hi Amirhossein - That fix applied only to the 5.1
> version. I'd
> recommend using the 5.3 version for tracula. Are
> you getting a
> memory error, and if so with which version?
>
> Thanks,
> a.y
>
>
> On Mon, 22 Jul 2013, amirhossein manzouri wrote:
>
> Dear Anastasia,
> I am trying to download the
> dmri_5.1_snow_leopard.tar.__gz from
>
> FreeSurfer
> website to solve memory problem but it is not
> available. Would
> you please
> check the source to the link?
>
>
> On Wed, Jul 17, 2013 at 5:51 PM, amirhossein
> manzouri
> <a.h.manzouri(a)gmail.com
> <mailto:a.h.manzouri@gmail.com> <mailto:a.h.manzouri@gmail.com
> <mailto:a.h.manzouri@gmail.com>__>
> <mailto:a.h.manzouri@gmail.com
> <mailto:a.h.manzouri@gmail.com>
>
> <mailto:a.h.manzouri@gmail.com
> <mailto:a.h.manzouri@gmail.com>__>__>> wrote:
> The format of my bval file was wrong so
> I edited
> your
> file and
> tried and it worked, also bvec should be in
> three columns
> as you
> have mentioned before.
>
>
> On Wed, Jul 17, 2013 at 5:11 PM, Anastasia Yendiki
> <ayendiki(a)nmr.mgh.harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>
> <mailto:ayendiki@nmr.mgh.
> <mailto:ayendiki@nmr.mgh.>__har__vard.edu <http://harvard.edu>
>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>>> wrote:
>
> Good to hear! Can you please share with
> all of
> us what was
> wrong with your original files? It may help
> others who
> have the same problem in the future.
> Thanks!
>
> On Wed, 17 Jul 2013, amirhossein
> manzouri wrote:
>
> Thanks Anastasia,
> IT HELPED!
>
>
> On Tue, Jul 16, 2013 at 5:25 PM,
> Anastasia
> Yendiki
> <ayendiki(a)nmr.mgh.harvard.edu <mailto:ayendiki@nmr.mgh.harvard.edu>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>
> <mailto:ayendiki@nmr.mgh.
> <mailto:ayendiki@nmr.mgh.>__har__vard.edu <http://harvard.edu>
>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>>>
>
> wrote:
>
> Hi Amirhossein - I'm
> attaching sample
> files.
>
> a.y
>
> On Tue, 16 Jul 2013,
> amirhossein
> manzouri wrote:
>
> Hi Anastasia,
> I have tried both ,
> 3-row and
> 3-column format and still
> wrong bvecc and bval
> from flip4fsl. Could
> you please
> send me a sample of your
> original files so I
> can compare?
>
>
> On Mon, Jul 15, 2013
> at 7:44 PM,
> Anastasia Yendiki
>
> <ayendiki(a)nmr.mgh.harvard.edu <mailto:ayendiki@nmr.mgh.harvard.edu>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>
> <mailto:ayendiki@nmr.mgh.
> <mailto:ayendiki@nmr.mgh.>__har__vard.edu <http://harvard.edu>
>
> <mailto:ayendiki@nmr.mgh.__harvard.edu
> <mailto:ayendiki@nmr.mgh.harvard.edu>>>>
>
> wrote:
>
> Hi Amirhossein
> - Are your
> original bvecs/bvals in
> 3-row format
> instead of
> 3-column format?
>
>
> http://surfer.nmr.mgh.harvard.______edu/fswiki/FsTutorial/____Tracula
>
>
>
> <http://surfer.nmr.mgh.__harva__rd.edu/fswiki/FsTutorial/____Tracula
> <http://harvard.edu/fswiki/FsTutorial/__Tracula>
>
>
> <http://surfer.nmr.mgh.__harvard.edu/fswiki/FsTutorial/__Tracula
> <http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula>>>
>
> Thanks,
> a.y
>
> On Mon, 15 Jul
> 2013,
> amirhossein manzouri wrote:
>
> Dear Experts,
> I am
> running trac-all
> -prep -c dmrirc on my
> DWI
> data.
> After flip4fsl
> step I get the attached
> bval
> and bvec
> file which
> the bvec one is wrong so
> the
> process exits
> with
> error in dtifit.
> I have also attached
> original
> bvec and
> bval.
>
> --
> Best regards,
>
> Amirhossein Manzouri
>
>
>
>
>
>
>
> The information in
> this e-mail is
> intended only for the
> person to whom
> it is
> addressed. If you
> believe this
> e-mail was sent to you in
> error and the
> e-mail
> contains patient
> information,
> please contact the Partners
> Compliance
> HelpLine at
>
> http://www.partners.org/______complianceline
> <http://www.partners.org/____complianceline>
> <http://www.partners.org/____complianceline
> <http://www.partners.org/__complianceline>>
>
>
> <http://www.partners.org/____complianceline
> <http://www.partners.org/__complianceline>
> <http://www.partners.org/__complianceline
> <http://www.partners.org/complianceline>>> . If
> the e-mail was
> sent to you
> in error
> but does not contain
> patient
> information, please contact
> the sender
> and properly
> dispose of the e-mail.
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
>
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
>
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
>
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
>
>
> ___________________________________________________
> Freesurfer mailing list
> Freesurfer(a)nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> <mailto:Freesurfer@nmr.mgh.__harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
> https://mail.nmr.mgh.harvard.____edu/mailman/listinfo/____freesurfer
>
>
> <https://mail.nmr.mgh.harvard.__edu/mailman/listinfo/__freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
>
>
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
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