Freesurfer

freesurfer@nmr.mgh.harvard.edu

30132 discussions

What is the correct way to cite Freesurfer in a journal paper?
by john.drozd＠gmail.com 13 Jan '13

13 Jan '13

Hello, I am writing a paper for publication in Neuroimage. I used Freesurfer 4.3 to segment brain anatomy. Lateral ventricles were my focus. Can someone please tell me what is the correct way to cite Freesurfer in a bibliography? Is there a paper I can cite? Thank you, John Drozd John Jan Drozd, M.Sc., Ph.D. Financial Secretary Knights of Columbus St. Pius X Council 10561 Holy Family Parish Post-Doctoral Scholar (Fellow) Imaging Department Robarts Research Institute Western University London, ON, Canada http://publish.uwo.ca/~jdrozd2 http://kong.apmaths.uwo.ca/~jdrozd/personal.html http://kong.apmaths.uwo.ca/~jdrozd/bio.html http://cfmm.robarts.ca/people/staff/bartha-group/#john cell phone: 519-282-3340

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Freesurfer fails
by Franklin, Crystal G 13 Jan '13

13 Jan '13

Freesurfer, I have been running a group of subjects through recon-all and some of the subjects are failing at the very beginning of the process and I am not sure why. The images look fine, but I keep getting the following error: #@# Talairach Failure Detection Fri Dec 7 10:54:57 CST 2012 /Applications/freesurfer/subjects/PHY002/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0013, pval=0.0000 < threshold=0.0050) INFO: Attempting MINC mritotal to perform Talairach align Do you know what could be causing this? I read that you can include the command –notal –check to skip this test, but how will this effect my data? If I run this command on the subjects that failed and combine their results with the subjects that worked will my group results be effected? Any help would be appreciated. I have attached one of the log files for a subject that failed. Thanks, Crystal

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Analysis ROI between two levels
by xiangbo_2010＠126.com 13 Jan '13

13 Jan '13

发送自我的HTC One SU ----- Forwarded message ----- 发件人： "xiangbo_2010" <xiangbo_2010(a)126.com> 收件人： "MCLAREN, Donald" <mclaren.donald(a)gmail.com> 抄送： <freesurfer(a)nmr.mgh.harvard.edu> 主题： [Freesurfer] contrast matrix 日期：周二, 12 月 11 日, 2012 年 20:08 Dear experts I had obtained a ROI through the interaction between factor 1(A,B) and factor 2(C,D,E), the following: I want to detect the difference between C and D in this ROI. Whether it was done using Freesurfer? thanks! Bo Xiang At 2012-12-02 05:24:18,"MCLAREN, Donald" <mclaren.donald(a)gmail.com> wrote: >Bo Xiang got the following Error Message. Attached are the mtx and >fsgd file. Does anyone what caused the error? > >> >>On Fri, Nov 30, 2012 at 8:28 AM, xiangbo_2010 <xiangbo_2010(a)126.com> wrote: >>> Dear Donald McLaren >>> >>> I used the contrast to run, but the error is appear: >>> >>> mri_glmfit --y lh.gender_age.thickness.10.mgh --fsgd COMTthreeinteryes.fsgd >>> dods --C COMTthreeinteryes.mtx --surf fsaverage rh --cortex --glmdir >>> lh.COMTthree.glmdir >>> >>> gdfReadHeader: reading COMTthreeinteryes.fsgd >>> INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. >>> Continuous Variable Means (all subjects) >>> 0 age 26.2227 11.3891 >>> Class Means of each Continuous Variable >>> 1 MAC 23.9333 >>> 2 MAD 23.5455 >>> 3 MAE 24.5000 >>> 4 MBC 28.6923 >>> 5 MBD 26.3158 >>> 6 MBE 30.3750 >>> 7 FAC 24.1707 >>> 8 FAD 26.4643 >>> 9 FAE 25.0909 >>> 10 FBC 25.9130 >>> 11 FBD 31.5217 >>> 12 FBE 34.0000 >>> INFO: gd2mtx_method is dods >>> Reading source surface /media/freesurfer1/CT/fsaverage/surf/rh.white >>> Number of vertices 163842 >>> Number of faces 327680 >>> Total area 65020.765625 >>> AvgVtxArea 0.396850 >>> AvgVtxDist 0.717994 >>> StdVtxDist 0.193566 >>> >>> $Id: mri_glmfit.c,v 1.196.2.6 2011/05/05 20:54:25 greve Exp $ >>> cwd /media/freesurfer1/CT >>> cmdline mri_glmfit --y lh.gender_age.thickness.10.mgh --fsgd >>> COMTthreeinteryes.fsgd dods --C COMTthreeinteryes.mtx --surf fsaverage rh >>> --cortex --glmdir lh.COMTthree.glmdir >>> sysname Linux >>> hostname psylab-desktop >>> machine x86_64 >>> user psylab >>> FixVertexAreaFlag = 1 >>> UseMaskWithSmoothing 1 >>> OneSampleGroupMean 0 >>> y /media/freesurfer1/CT/lh.gender_age.thickness.10.mgh >>> logyflag 0 >>> usedti 0 >>> FSGD COMTthreeinteryes.fsgd >>> labelmask /media/freesurfer1/CT/fsaverage/label/rh.cortex.label >>> maskinv 0 >>> glmdir lh.COMTthree.glmdir >>> IllCondOK 0 >>> ReScaleX 1 >>> DoFFx 0 >>> Creating output directory lh.COMTthree.glmdir >>> Loading y from /media/freesurfer1/CT/lh.gender_age.thickness.10.mgh >>> INFO: gd2mtx_method is dods >>> Saving design matrix to lh.COMTthree.glmdir/Xg.dat >>> Normalized matrix condition is 82.694 >>> Matrix condition is 73313.7 >>> Found 149926 points in label. >>> Pruning voxels by thr: 0.000000 >>> Found 149926 voxels in mask >>> Saving mask to lh.COMTthree.glmdir/mask.mgh >>> Reshaping mriglm->mask... >>> search space = 74490.928733 >>> MatrixReadTxT: could not scan value [3][1] >>> >>> ERROR: loading C COMTthreeinteryes.mtx >>> >>> thanks! >>> >>> Bo Xiang >>> >>> >>> >>> >>> >>> At 2012-11-30 06:25:12,"MCLAREN, Donald" <mclaren.donald(a)gmail.com> wrote: >>>>Yes. >>>> >>>>Best Regards, Donald McLaren >>>>================= >>>>D.G. McLaren, Ph.D. >>>>Research Fellow, Department of Neurology, Massachusetts General Hospital >>>> and >>>>Harvard Medical School >>>>Postdoctoral Research Fellow, GRECC, Bedford VA >>>>Website: http://www.martinos.org/~mclaren >>>>Office: (773) 406-2464 >>>>===================== >>>>This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED >>>>HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is >>>>intended only for the use of the individual or entity named above. If the >>>>reader of the e-mail is not the intended recipient or the employee or agent >>>>responsible for delivering it to the intended recipient, you are hereby >>>>notified that you are in possession of confidential and privileged >>>>information. Any unauthorized use, disclosure, copying or the taking of any >>>>action in reliance on the contents of this information is strictly >>>>prohibited and may be unlawful. If you have received this e-mail >>>>unintentionally, please immediately notify the sender via telephone at >>>> (773) >>>>406-2464 or email. >>>> >>>> >>>>On Wed, Nov 28, 2012 at 3:27 AM, xiangbo_2010 <xiangbo_2010(a)126.com> wrote: >>>>> Dear Donald McLaren >>>>> >>>>>>> I want to make interaction between factor 1 (A,B) and factor 2 >>>>>>> (C,D,E). >>>>>>> age >>>>> >>>>>>> and gender (M,F) >>>>>>> as covariates, I can get 12 classes: ACM ADM AEM BCM BDM BEM ACF ADF >>>>>>> AEF >>>>>>> BCF BDF BEF and make the contrast: >>>>>>> >>>>>>> +ACM -ADM 0 -BCM +BDM 0 +ACF -ADF 0 -BCF +BDF 0 age age age age age age >>>>>>> age age age age age age >>>>>>> 0 +ADM -AEM 0 -BDM +BEM 0 +ADF -AEF 0 -BDF +BEF age age age age age age >>>>>>> age age age age age age >>>>> because the age an

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error: could not read 65536 bytes at slice 76 in skull stripping process
by Sandra Preissler 12 Jan '13

12 Jan '13

Dear freesurfer users, I have an unexpected error using autorecon1. The error occurred during the skull stripping process of a person called PTpost_P04. First I tried: recon-all autorecon1 s PTpost_P04 After the first error (recon-all -s PTpost_P04 exited with ERRORS) I checked the logfile and tried the following: cd /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/freesurfer/PTpost_P04/mri followed directly by: mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -T1 -brain_atlas /opt/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz I became the error message: could not read 65536 bytes at slice 76 The information about the freesurfer version and linux version used are: FREESURFER_HOME: /opt/freesurfer Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 Kernel info: Linux 2.6.34.10-0.6-default x86_64 It would be great if anybody could help me in solving this. Best regards Sandra ---------------------------------------------------------------- This message was sent through https://webmail.uni-jena.de

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Re: [Freesurfer] QA Tools Snaps Scrambled - Follow up
by Irwin, William 12 Jan '13

12 Jan '13

Hi Louis- I dug a little deeper and examined the rgb files before conversion. The problem is not with the IM conversion, it is with the capture. For example, '<subject>_curv_lh_lat.rgb' is just fine, but from the same subject 'snapshot-talairach-H-128.rgb' is garbage. Any ideas on this? Thanks, Wil -----Original Message----- From: Irwin, William Sent: Wednesday, January 09, 2013 6:22 AM To: Louis Nicholas Vinke Cc: freesurfer(a)nmr.mgh.harvard.edu; Irwin, William Subject: RE: [Freesurfer] QA Tools Snaps Scrambled - Clairification Hi Louis- I was speaking cryptically and/or imprecisely. Of course there are dependencies for IM-- in fact about 8 libraries which are uniquely required by IM. I was thinking about a higher (or lower) level of dependency. This would suggest a more system-level problem, but I'm not having problems with any of the other apps running on my system. Obviously I'm not asking you to help diagnose the health of my system, but though you might have some thoughts/suggestions. Regards, Wil -----Original Message----- From: Irwin, William Sent: Wednesday, January 09, 2013 5:37 AM To: Louis Nicholas Vinke Cc: freesurfer(a)nmr.mgh.harvard.edu; Irwin, William Subject: RE: [Freesurfer] QA Tools Snaps Scrambled Hi Louis- No problem doing command line conversion of an rgb to either jpg or gif in terms of error messages. However, the converted files are scrambled. Might there be a dependency on which ImageMagick relies which still in place, but corrupted? I was under the impression ImageMagick was self-contained. This is a real mystery -Wil -----Original Message----- From: Louis Nicholas Vinke [mailto:vinke@nmr.mgh.harvard.edu] Sent: Tuesday, January 08, 2013 6:29 PM To: Irwin, William Cc: freesurfer(a)nmr.mgh.harvard.edu Subject: Re: [Freesurfer] QA Tools Snaps Scrambled Hi Irwin, It sounds like the snapshots from tksurfer are fine, but the ones from tkmedit are not being generated properly. It may be this peculiar bug where ImageMagick has trouble reading rgb files. Try converting an rgb file to a jpg 'convert file.rgb file.jpg'. You may get the error 'Improper image header'. The tksurfer tcl script saves tiff files, the tkmedit tcl script saves rgbs, which may explain why some images are fine. -Louis On Tue, 8 Jan 2013, Irwin, William wrote: > > Hi- > > > > I’ve come across a peculiar behavior with recon_checker, and am hoping > someone can shed some light on this. > > > > I have used it 100’s of times in the past, but not for about 2 months. > I recently processed a large set of cases I wanted to QC. When I ran > it, some, but not all, of the snaps were corrupted. Specifically the > talairach, aseg, surfs, and all the ‘detailed snaps’, which are > basically additional instances of the aforementioned types. The > inflated, curv, and parc are all just fine. As the process runs, all > images are being displayed in the pop-up windows, and the html page is created. > > > > While there have been no system changes which should affect this, I > upgraded from ImageMagick 6.5.4 to 6.8.1 to see if this would fix the > problem. The problem remains. And the problem remains w/ or w/o the > flag for detailed snaps. > > > > If all of the images were corrupted, I would have certainly concluded > something has gone awry with my system. The fact that only some of the > images are corrupted makes me scratch my head. > > > > Thoughts? Suggestions? > > > > Thanks, > > Wil > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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recon-all process on brain regions of interest
by ZhiLiangLong 12 Jan '13

12 Jan '13

Hi everyone: I met problem about the recon-all process. I got some brain regions showing group-differences of activation in task. Now, i want to compare the difference of cortical thickness on these brain regions. I prefer to limit the compution of cortical thickness on my regions of interest rather than the whole brain to reduce compution time. But i do not know how the recon-all works it out. I need your suggestions. In addition, assume that i have finished recon-all process on the whole brain, how can i obtain the cortical thickness of my regions of interest? All the best!

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NIFTI q-factor in NIFTI header
by Jürgen Hänggi 11 Jan '13

11 Jan '13

Dear FS experts Please can you confirm that the NIFTI q-factor in the NIFTI header has to be negative (e.g. -1) in order to have correct right and left orientation. When the NIFTI q-factor is positive in my T1-w. and DTI images, then the left and the right hemisphere seem to be flipped. Thanks in advance Regards Jürgen Hänggi ---------------------------------------------------------------------------- Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) This e-mail (and any attachment/s) contains confidential and/or privileged information. If you are not the intended recipient (or have received this e-mail in error) please notify the sender immediately and destroy this e-mail. Any unauthorised copying, disclosure or distribution of the material in this e-mail is strictly forbidden. ----------------------------------------------------------------------------

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Fw: Re: tksurfer - rotate surface with mouse
by jonwieser＠netzero.net 11 Jan '13

11 Jan '13

> I tried running freeview and it aborted > > psy-cerebrum-r1:data brainlab$ freeview -f rh.orig > > bus error > we are using a Mac Pro 2.26GHz 8 cores mac Os X 10.6.8 RAM : 12 GB with X11 and Xquartz > tkmedit works fine > > here's the problem report from our machine > > Process: freeview.bin [21698] > Path: /usr/local/freesurfer/bin/Freeview.app/Contents/MacOS/freeview.bin > Identifier: freeview.bin > Version: 'latest trunk' ('latest trunk') > Code Type: X86 (Native) > Parent Process: bash [555] > > Date/Time: 2013-01-11 09:16:52.146 -0600 > OS Version: Mac OS X 10.6.8 (10K549) > Report Version: 6 > > Interval Since Last Report: 2980979 sec > Crashes Since Last Report: 6 > Per-App Crashes Since Last Report: 4 > Anonymous UUID: 314FF2FE-43B0-4221-BF9A-F4428211ADA0 > > Exception Type: EXC_BAD_ACCESS (SIGBUS) > Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 > Crashed Thread: 0 Dispatch queue: com.apple.main-thread > > Thread 0 Crashed: Dispatch queue: com.apple.main-thread > 0 ??? 0000000000 0 + 0 > 1 libvtkRendering.5.2.dylib 0x02b3d1a9 vtkCarbonRenderWindow::CreateAWindow() + 281 > 2 libvtkRendering.5.2.dylib 0x02b3bfa4 vtkCarbonRenderWindow::WindowInitialize() + 52 > 3 libvtkRendering.5.2.dylib 0x02b3a435 vtkCarbonRenderWindow::Start() + 21 > 4 libvtkRendering.5.2.dylib 0x02aa11db vtkRenderWindow::DoStereoRender() + 27 > 5 libvtkRendering.5.2.dylib 0x02aa13a9 vtkRenderWindow::DoFDRender() + 153 > 6 libvtkRendering.5.2.dylib 0x02aa1832 vtkRenderWindow::DoAARender() + 98 > 7 libvtkRendering.5.2.dylib 0x02a9fc54 vtkRenderWindow::Render() + 644 > 8 freeview.bin 0x0011d547 wxVTKRenderWindowInteractor::OnPaint(wxPaintEvent&) + 151 > 9 freeview.bin 0x00407b53 wxAppConsole::HandleEvent(wxEvtHandler*, void (wxEvtHandler::*)(wxEvent&), wxEvent&) const + 65 > 10 freeview.bin 0x00452f30 wxEvtHandler::ProcessEventIfMatches(wxEventTableEntryBase const&, wxEvtHandler*, wxEvent&) + 212 > 11 freeview.bin 0x004532d4 wxEventHashTable::HandleEvent(wxEvent&, wxEvtHandler*) + 204 > 12 freeview.bin 0x00453f5e wxEvtHandler::ProcessEvent(wxEvent&) + 240 > 13 freeview.bin 0x003525e3 wxWindow::MacDoRedraw(void*, long) + 975 > 14 freeview.bin 0x00353985 wxMacWindowControlEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 815 > 15 freeview.bin 0x00354135 wxMacWindowEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 181 > 16 com.apple.HIToolbox 0x9527ac0f DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1567 > 17 com.apple.HIToolbox 0x95279ed6 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 411 > 18 com.apple.HIToolbox 0x95279d35 SendEventToEventTargetWithOptions + 58 > 19 com.apple.HIToolbox 0x952a1e85 HIView::SendDraw(short, OpaqueGrafPtr*, __HIShape const*, CGContext*) + 475 > 20 com.apple.HIToolbox 0x952a17d9 HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 713 > 21 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 22 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 23 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 24 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 25 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 26 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 > 27 com.apple.HIToolbox 0x952a07ff HIView::DrawComposited(short, OpaqueGrafPtr*, __HIShape const*, unsigned long, HIView*, CGContext*) + 873 > 28 com.apple.HIToolbox 0x952a0445 HIView::Draw(short, OpaqueGrafPtr*, unsigned long) + 83 > 29 com.apple.HIToolbox 0x952a0395 HIView::Render(unsigned long, CGContext*) + 45 > 30 com.apple.HIToolbox 0x9529fcdd WindowData::PrepareForVisibility() + 145 > 31 com.apple.HIToolbox 0x9529f298 _ShowHideWindows + 291 > 32 com.apple.HIToolbox 0x953020e3 ShowWindow + 79 > 33 freeview.bin 0x00346f86 wxTopLevelWindowMac::Show(bool) + 280 > 34 freeview.bin 0x00072060 MainApp::CreateMainWindow() + 96 > 35 freeview.bin 0x000727b5 MainApp::InitializeGUI() + 581 > 36 freeview.bin 0x0007301a MainApp::OnInit() + 1898 > 37 freeview.bin 0x00076abf wxAppConsole::CallOnInit() + 15 > 38 freeview.bin 0x0042b70c wxEntry(int&, char**) + 110 > 39 freeview.bin 0x00071f87 main + 23 > 40 freeview.bin 0x00003406 start + 54 > > Thread 1: Dispatch queue: com.apple.libdispatch-manager > 0 libSystem.B.dylib 0x9a523382 kevent + 10 > 1 libSystem.B.dylib 0x9a523a9c _dispatch_mgr_invoke + 215 > 2 libSystem.B.dylib 0x9a522f59 _dispatch_queue_invoke + 163 > 3 libSystem.B.dylib 0x9a522cfe _dispatch_worker_thread2 + 240 > 4 libSystem.B.dylib 0x9a522781 _pthread_wqthread + 390 > 5 libSystem.B.dylib 0x9a5225c6 start_wqthread + 30 > > Thread 2: > 0 libSystem.B.dylib 0x9a522412 __workq_kernreturn + 10 > 1 libSystem.B.dylib 0x9a5229a8 _pthread_wqthread + 941 > 2 libSystem.B.dylib 0x9a5225c6 start_wqthread + 30 > > Thread 0 crashed with X86 Thread State (32-bit): > eax: 0x00f101a0 ebx: 0x02b187eb ecx: 0x00000000 edx: 0x00efbd68 > edi: 0x02b536f8 esi: 0x0439db10 ebp: 0xbfffc9f8 esp: 0xbfffc9cc > ss: 0x0000001f efl: 0x00010206 eip: 0x00000000 cs: 0x00000017 > ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 > cr2: 0x00000000 > > Binary Images: > 0x1000 - 0x622ff7 +freeview.bin 'latest trunk' ('latest trunk') <D46BB610-8C7E-9068-6317-4581178C2A87> /usr/local/freesurfer/bin/Freeview.app/Contents/MacOS/freeview.bin > 0xe83000 - 0xee0ffb +libGLU.1.dylib 1.3.0 (compatibility 1.3.0) <367FE206-843B-D4FA-26FF-7B331B4C05F3> /usr/X11/lib/libGLU.1.dylib > 0xef4000 - 0xf0eff7 +libGL.1.dylib 1.2.0 (compatibility 1.2.0) <7F3320E5-D405-1DEC-50A0-BDAF42276445> /usr/X11/lib/libGL.1.dylib > 0xf25000 - 0xf34fe7 +libXmu.6.dylib 9.0.0 (compatibility 9.0.0) <29D0559C-07A5-42B8-BC48-A20A2633FC02> /usr/X11/lib/libXmu.6.dylib > 0xf3d000 - 0xf78ff7 +libXt.6.dylib 7.0.0 (compatibility 7.0.0) <192EE611-7846-A32E-2799-A83C3270AD06> /usr/X11/lib/libXt.6.dylib > 0xf8e000 - 0xf92ff7 +libSM.6.dylib 7.0.0 (compatibility 7.0.0) <EF3EF10E-2712-E4DB-C6FD-F52F803782B2> /usr/X11/lib/libSM.6.dylib > 0xf97000 - 0xfa6ff7 +libICE.6.dylib 10.0.0 (compatibility 10.0.0) <B3AF126E-F513-940C-0B10-B41D7A215747> /usr/X11/lib/libICE.6.dylib > 0xfaf000 - 0xfb8ff7 +libXext.6.dylib 11.0.0 (compatibility 11.0.0) <04A8F778-CB07-8B2A-CD93-43CBCB92043A> /usr/X11/lib/libXext.6.dylib > 0xfbf000 - 0x10b3ff7 +libX11.6.dylib 9.0.0 (compatibility 9.0.0) <C982A508-21E9-7107-E94F-30503748BE22> /usr/X11/lib/libX11.6.dylib > 0x10d5000 - 0x10d7fe7 +libXdmcp.6.dylib 7.0.0 (compatibility 7.0.0) <CEC90676-9586-3160-1982-EBDCCFEED45A> /usr/X11/lib/libXdmcp.6.dylib > 0x10dc000 - 0x10ddff7 +libXau.6.dylib 7.0.0 (compatibility 7.0.0) <1BCAF459-79A1-7AA7-E476-51E2A90E5F3A> /usr/X11/lib/libXau.6.dylib > 0x10e1000 - 0x1106ff3 +libvtkverdict.vtk5.2.0.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkverdict.vtk5.2.0.dylib > 0x1110000 - 0x1663feb +libvtkGraphics.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkGraphics.5.2.dylib > 0x17e4000 - 0x1807fe0 +libvtkexpat.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkexpat.5.2.dylib > 0x180f000 - 0x1881fe4 +libvtkfreetype.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkfreetype.5.2.dylib > 0x1892000 - 0x18e1fff +libvtktiff.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtktiff.5.2.dylib > 0x18ec000 - 0x190bffb +libvtkjpeg.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkjpeg.5.2.dylib > 0x1912000 - 0x1976ff0 +libvtkmetaio.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkmetaio.5.2.dylib > 0x1999000 - 0x19bafef +libvtkpng.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkpng.5.2.dylib > 0x19c2000 - 0x19d2feb +libvtkzlib.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkzlib.5.2.dylib > 0x19d7000 - 0x1a5ffef +libvtksqlite.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtksqlite.5.2.dylib > 0x1a6a000 - 0x1d61ff7 +libvtkImaging.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkImaging.5.2.dylib > 0x1e26000 - 0x1ffefeb +libvtkFiltering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkFiltering.5.2.dylib > 0x20f8000 - 0x22a4fe7 +libvtkCommon.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkCommon.5.2.dylib > 0x235f000 - 0x237eff2 +libvtksys.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtksys.5.2.dylib > 0x238d000 - 0x23b6fff +libvtkGenericFiltering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkGenericFiltering.5.2.dylib > 0x23cc000 - 0x2412ff3 +libvtkexoIIc.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkexoIIc.5.2.dylib > 0x241a000 - 0x244bfff +libvtkNetCDF.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkNetCDF.5.2.dylib > 0x2456000 - 0x2797ff3 +libvtkVolumeRendering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkVolumeRendering.5.2.dylib > 0x29c4000 - 0x2b9cfee +libvtkRendering.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkRendering.5.2.dylib > 0x2cf2000 - 0x2cf9fff +libvtkftgl.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkftgl.5.2.dylib > 0x2cff000 - 0x2e2ffff +libvtkWidgets.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkWidgets.5.2.dylib > 0x2ecb000 - 0x30c2ff7 +libvtkHybrid.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkHybrid.5.2.dylib > 0x3181000 - 0x34cdffb +libvtkIO.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkIO.5.2.dylib > 0x360b000 - 0x361dfe7 +libvtkDICOMParser.5.2.dylib ??? (???) /usr/local/freesurfer/lib/vtkfreeview/lib/vtk-5.2/libvtkDICOMParser.5.2.dylib > 0x3629000 - 0x3635ff7 libXplugin.1.dylib ??? (???) <8C548953-0F07-0478-2B8C-6858CC8FC183> /usr/lib/libXplugin.1.dylib > 0x45e5000 - 0x45e6ff7 com.apple.textencoding.unicode 2.3 (2.3) <A7D310DB-A5E6-C834-F72F-A66453834CC0> /System/Library/TextEncodings/Unicode Encodings.bundle/Contents/MacOS/Unicode Encodings > 0x47b8000 - 0x47bcff7 com.apple.CommonCocoaPanels 4.0 (16) <0E766C21-37E4-C261-E76B-0FA2C7F50EE3> /System/Library/CoreServices/CommonCocoaPanels.bundle/Contents/MacOS/CommonCocoaPanels > 0x47d4000 - 0x47f8fe7 GLRendererFloat ??? (???) <F19DDBE8-1DF6-6618-F554-0E81ED85CE67> /System/Library/Frameworks/OpenGL.framework/Resources/GLRendererFloat.bundle/GLRendererFloat > 0xa000000 - 0xa07cfef +libtcl8.4.dylib 8.4.0 (compatibility 8.4.0) /usr/local/freesurfer/lib/tcltktixblt/lib/libtcl8.4.dylib > 0xb000000 - 0xb0a4fff +libtk8.4.dylib 8.4.0 (compatibility 8.4.0) <09A6AB57-49F3-62AD-8838-BFE610A8F33F> /usr/local/freesurfer/lib/tcltktixblt/lib/libtk8.4.dylib > 0x14000000 - 0x14179ff7 GLEngine ??? (???) <76C922AA-A4A7-2835-537B-17F316AD95F6> /System/Library/Frameworks/OpenGL.framework/Resources/GLEngine.bundle/GLEngine > 0x141ab000 - 0x145b0fe7 libclh.dylib 3.1.1 C (3.1.1) <15AD52DD-FC3F-305E-5C31-699329E8FDE1> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/libclh.dylib > 0x8f0c6000 - 0x8f811fff com.apple.GeForceGLDriver 1.6.36 (6.3.6) <3BB341B6-11A7-38AD-10A3-F89506FD40D4> /System/Library/Extensions/GeForceGLDriver.bundle/Contents/MacOS/GeForceGLDriver > 0x8fe00000 - 0x8fe4162b dyld 132.1 (???) <283EE026-C0FE-1FF9-DB81-BFB155793157> /usr/lib/dyld > 0x90003000 - 0x90047ff3 com.apple.coreui 2 (114) <1A3C3B7F-3837-6477-3114-47F6BFD56CB2> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI > 0x90048000 - 0x90054ff7 libkxld.dylib ??? (???) <9A441C48-2D18-E716-5F38-CBEAE6A0BB3E> /usr/lib/system/libkxld.dylib > 0x90055000 - 0x90126fe3 ColorSyncDeprecated.dylib 4.6.0 (compatibility 1.0.0) <C618942F-BC01-0565-18CF-477B63C02181> /System/Library/Frameworks/ApplicationServices.framework/Frameworks/ColorSync.framework/Versions/A/Resources/ColorSyncDeprecated.dylib > 0x90127000 - 0x9012bff7 libGIF.dylib ??? (???) <9E51F8ED-83B4-DA41-1E2F-CFA726936A30> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib > 0x9012c000 - 0x901d8fe7 com.apple.CFNetwork 454.12.4 (454.12.4) <DEDCD006-389F-967F-3405-EDF541F406D7> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork > 0x90201000 - 0x9020ffe7 libz.1.dylib 1.2.3 (compatibility 1.0.0) <E1B922F4-23DC-467E-631F-7E1B9C9F51CB> /usr/lib/libz.1.dylib > 0x9021b000 - 0x9025cff7 libRIP.A.dylib 545.0.0 (compatibility 64.0.0) <80998F66-0AD7-AD12-B9AF-3E8D2CE6DE05> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib > 0x90307000 - 0x9030eff7 com.apple.agl 3.0.12 (AGL-3.0.12) <46BD2265-78DC-2FAB-73C6-E224755C070D> /System/Library/Frameworks/AGL.framework/Versions/A/AGL > 0x9030f000 - 0x90373fff com.apple.htmlrendering 72 (1.1.4) <0D22B190-513B-7FF6-39FC-9D336285DE08> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering > 0x90374000 - 0x9043ffef com.apple.CoreServices.OSServices 359.2 (359.2) <7C16D9C8-6F41-5754-17F7-2659D9DD9579> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices > 0x9055d000 - 0x912d5fe7 com.apple.WebCore 6534.57 (6534.57.2) <6AF29D9A-F549-5BE7-3842-CFF75FC46360> /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore > 0x912f6000 - 0x912fcfff com.apple.CommonPanels 1.2.4 (91) <CE92759E-865E-8A3B-1488-ECD497E4074D> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels > 0x915f1000 - 0x9168cfe7 com.apple.ApplicationServices.ATS 275.19 (???) <2E83B3E9-AF39-36FC-5D05-CC1E952098AB> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS > 0x9168d000 - 0x916a2fff com.apple.ImageCapture 6.1 (6.1) <B909459A-EAC9-A7C8-F2A9-CD757CDB59E8> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture > 0x916ce000 - 0x916eafe3 com.apple.openscripting 1.3.1 (???) <0E6B81D1-C1BD-1B5F-836F-256E6701B5DE> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting > 0x91c8a000 - 0x91dc7fe7 com.apple.audio.toolbox.AudioToolbox 1.6.7 (1.6.7) <423BDE4D-5082-B6CA-BB2C-E22A037235A4> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox > 0x91dc8000 - 0x91dfbff7 com.apple.AE 496.5 (496.5) <BF9673D5-2419-7120-26A3-83D264C75222> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE > 0x91e5f000 - 0x91e6aff7 libCSync.A.dylib 545.0.0 (compatibility 64.0.0) <287DECA3-7821-32B6-724D-AE03A9A350F9> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib > 0x91ef5000 - 0x91f38ff7 com.apple.NavigationServices 3.5.4 (182) <FE19D51B-233A-69EC-9E36-B89D0EA438C1> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices > 0x91f39000 - 0x9219fff7 com.apple.security 6.1.2 (55002) <3FA54D69-5476-78DD-0AFC-D6697263890E> /System/Library/Frameworks/Security.framework/Versions/A/Security > 0x92356000 - 0x92391ffb libFontRegistry.dylib ??? (???) <19ED5DE0-D3AF-B229-9193-35D58FE377E5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib > 0x92417000 - 0x92497feb com.apple.SearchKit 1.3.0 (1.3.0) <7AE32A31-2B8E-E271-C03A-7A0F7BAFC85C> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit > 0x92498000 - 0x924a2fe7 com.apple.audio.SoundManager 3.9.3 (3.9.3) <DE0E0EF6-8190-3F65-6BDD-5AC9D8A025D6> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound > 0x92b0d000 - 0x92c0ffe7 libcrypto.0.9.8.dylib 0.9.8 (compatibility 0.9.8) <015563C4-81E2-8C8A-82AC-31B38D904A42> /usr/lib/libcrypto.0.9.8.dylib > 0x92d50000 - 0x92d57ff3 com.apple.print.framework.Print 6.1 (237.1) <726A7F31-8C27-8403-0016-71E022EDC14C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print > 0x92d58000 - 0x92d58ff7 com.apple.Carbon 150 (152) <8DD4F8DB-6DBD-1F65-F4EB-2981DBFDED50> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon > 0x92d59000 - 0x92d59ff7 com.apple.CoreServices 44 (44) <B9461120-F72A-D28F-D0CF-5647958BD3F9> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices > 0x92d5a000 - 0x92f33fff libType1Scaler.dylib ??? (???) <04AF2B34-81D4-97E9-BD56-387D37C16F46> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libType1Scaler.dylib > 0x92f34000 - 0x92f53ff7 com.apple.CoreVideo 1.6.2 (45.6) <F9E52A13-E181-D302-3B0E-0799ED6D6130> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo > 0x92f54000 - 0x92fbefe7 libstdc++.6.dylib 7.9.0 (compatibility 7.0.0) <411D87F4-B7E1-44EB-F201-F8B4F9227213> /usr/lib/libstdc++.6.dylib > 0x92fbf000 - 0x92fbfff7 com.apple.vecLib 3.6 (vecLib 3.6) <FF4DC8B6-0AB0-DEE8-ADA8-7B57645A1F36> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib > 0x92fc0000 - 0x93042ffb SecurityFoundation ??? (???) <20512B7E-DC54-8242-B656-64DCA1BFB739> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation > 0x93043000 - 0x931befe7 com.apple.CoreFoundation 6.6.6 (550.44) <F88C95CD-1264-782D-A1F5-204739847E93> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation > 0x931f2000 - 0x93203ff7 com.apple.LangAnalysis 1.6.6 (1.6.6) <B59157A1-8796-CE8F-2508-EB96F093F6A7> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis > 0x93215000 - 0x93535ff3 com.apple.CoreServices.CarbonCore 861.39 (861.39) <5C59805C-AF39-9010-B8B5-D673C9C38538> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore > 0x9448a000 - 0x94564fff com.apple.DesktopServices 1.5.11 (1.5.11) <800F2040-9211-81A7-B438-7712BF51DEE3> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv > 0x94652000 - 0x9465cffb com.apple.speech.recognition.framework 3.11.1 (3.11.1) <90C38107-AEE7-AE55-5C51-28D129B19BCD> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition > 0x94733000 - 0x94747ffb com.apple.speech.synthesis.framework 3.10.35 (3.10.35) <9F5CE4F7-D05C-8C14-4B76-E43D07A8A680> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis > 0x94748000 - 0x94748ff7 com.apple.ApplicationServices 38 (38) <EAF1BC8C-4FD4-4300-B8F7-4B24E49125E2> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices > 0x94749000 - 0x947c3fff com.apple.audio.CoreAudio 3.2.6 (3.2.6) <156A532C-0B60-55B0-EE27-D02B82AA6217> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio > 0x947c4000 - 0x94811feb com.apple.DirectoryService.PasswordServerFramework 6.1 (6.1) <9E35835E-BC33-F8EC-8F3B-84D51DEBDB16> /System/Library/PrivateFrameworks/PasswordServer.framework/Versions/A/PasswordServer > 0x94812000 - 0x94862fe7 libTIFF.dylib ??? (???) <E8B31850-BFD4-48E6-B264-A4340CD19929> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib > 0x94edf000 - 0x94f2fff7 com.apple.framework.familycontrols 2.0.2 (2020) <592738FA-B093-279A-8D4E-3F76A21E2912> /System/Library/PrivateFrameworks/FamilyControls.framework/Versions/A/FamilyControls > 0x94fa0000 - 0x94fa0ff7 liblangid.dylib ??? (???) <FCC37057-CDD7-2AF1-21AF-52A06C4048FF> /usr/lib/liblangid.dylib > 0x94fa1000 - 0x94fc3fef com.apple.DirectoryService.Framework 3.6 (621.15) <F38894EA-2C13-7FC5-C084-94DA0B5B6B68> /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService > 0x950f2000 - 0x95220fe7 com.apple.CoreData 102.1 (251) <0C2636F3-CCB4-5ED9-1D3E-5AE36BE57071> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData > 0x95273000 - 0x95597fef com.apple.HIToolbox 1.6.5 (???) <F21289A3-A00E-0BC3-66F1-7557862CE7EB> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox > 0x956fb000 - 0x95823fe7 com.apple.WebKit 6534.57 (6534.57.2) <4CB86278-4657-3503-8042-074628222DF3> /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit > 0x95988000 - 0x95a30ffb com.apple.QD 3.36 (???) <5A93B258-3853-636F-DB26-223642DA2779> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD > 0x960ad000 - 0x960adff7 com.apple.Accelerate.vecLib 3.6 (vecLib 3.6) <ABF97DA4-3BDF-6FFD-6239-B023CA1F7974> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib > 0x960ae000 - 0x960b2ff7 IOSurface ??? (???) <7D8204CE-3FF9-27EC-A760-9321C44467A2> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface > 0x960b3000 - 0x961b3fe7 libxml2.2.dylib 10.3.0 (compatibility 10.0.0) <BE7FCD73-03B5-25A4-FCA4-D4980F1488D6> /usr/lib/libxml2.2.dylib > 0x961b7000 - 0x961cbfe7 libbsm.0.dylib ??? (???) <B328FA0A-899C-4FC4-F2AC-2FDC08819CD2> /usr/lib/libbsm.0.dylib > 0x961cc000 - 0x961deff7 com.apple.MultitouchSupport.framework 207.11 (207.11) <6FF4F2D6-B8CD-AE13-56CB-17437EE5B741> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport > 0x96238000 - 0x962f0feb libFontParser.dylib ??? (???) <D2D0C922-5ED1-3AE9-6F99-707C74DF3E62> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib > 0x96332000 - 0x963ebfe7 libsqlite3.dylib 9.6.0 (compatibility 9.0.0) <03186216-0A12-4AA9-D7BA-3E3551A1195C> /usr/lib/libsqlite3.dylib > 0x96475000 - 0x96477ff7 libRadiance.dylib ??? 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(???) <6CC3CE6A-7024-C685-EADA-7F9DC27128E2> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib > 0x98767000 - 0x98a15fe7 com.apple.JavaScriptCore 6534.57 (6534.57.3) <5B18B308-DBB2-7133-DE56-494C2FA1848B> /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore > 0x98a16000 - 0x98a69ff7 com.apple.HIServices 1.8.3 (???) <1D3C4587-6318-C339-BD0F-1988F246BE2E> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices > 0x98a6a000 - 0x98a6dffb com.apple.help 1.3.2 (41.1) <8AC20B01-4A3B-94BA-D8AF-E39034B97D8C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help > 0x98a6e000 - 0x98a71ff7 libCoreVMClient.dylib ??? (???) <37F56237-4ABA-E5B5-968D-70FFE357E8E0> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib > 0x98a94000 - 0x98a9fff7 libGL.dylib ??? 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(???) <7CB1AB76-50A2-8E56-66E4-CF51CA75B177> /usr/lib/libauto.dylib > 0x99302000 - 0x994c5feb com.apple.ImageIO.framework 3.0.6 (3.0.6) <5BF202E9-730A-3675-4374-E5300BC8ED10> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO > 0x99513000 - 0x99515ff7 com.apple.securityhi 4.0 (36638) <A5F4B929-AEDE-2DFB-E02F-89CEC0940023> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI > 0x99516000 - 0x9955afe7 com.apple.Metadata 10.6.3 (507.15) <74F05E64-2A68-BA10-CCD4-128D164E5A0F> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata > 0x99686000 - 0x9971efe7 edu.mit.Kerberos 6.5.11 (6.5.11) <88CA2CC8-9005-E017-6D61-5809C3CE5FC6> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos > 0x9971f000 - 0x9973dfe7 libPng.dylib ??? (???) <5B979A83-8CE7-6BD7-B84C-A2D1119B378D> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib > 0x9973e000 - 0x9976fff7 libGLImage.dylib ??? (???) <D18E2E76-DBF4-6930-039A-F66CA0D120B3> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib > 0x99791000 - 0x9979fff7 com.apple.opengl 1.6.14 (1.6.14) <82622F67-E032-0BF6-A78D-50B346E8D0FD> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL > 0x997ec000 - 0x997f2fe7 com.apple.CommerceCore 1.0 (9.1) <521D067B-3BDA-D04E-E1FA-CFA526C87EB5> /System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.framework/Versions/A/CommerceCore > 0x997f6000 - 0x9980eff7 com.apple.CFOpenDirectory 10.6 (10.6) <6D726EA4-67D2-E534-13A3-E3767BA59786> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory > 0x9980f000 - 0x99818ff7 com.apple.DiskArbitration 2.3.1 (2.3.1) <AAE0185D-4A47-1833-27A3-03FDF734A3BA> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration > 0x9984f000 - 0x99877ff7 libxslt.1.dylib 3.24.0 (compatibility 3.0.0) <E761F29A-328B-29D9-3DF0-023F2C21E500> /usr/lib/libxslt.1.dylib > 0x998ca000 - 0x998f0ffb com.apple.DictionaryServices 1.1.2 (1.1.2) <5A8D5D84-06EB-F9B5-BA0A-A87A0A2C0035> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices > 0x998f1000 - 0x99bebfef com.apple.QuickTime 7.6.6 (1791) <8E56F3DC-725B-0299-7E62-8599CA6EC4C0> /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime > 0x99bec000 - 0x99beffe7 libmathCommon.A.dylib 315.0.0 (compatibility 1.0.0) <1622A54F-1A98-2CBE-B6A4-2122981A500E> /usr/lib/system/libmathCommon.A.dylib > 0x99bf0000 - 0x99c00ff7 libsasl2.2.dylib 3.15.0 (compatibility 3.0.0) <E276514D-394B-2FDD-6264-07A444AA6A4E> /usr/lib/libsasl2.2.dylib > 0x99c01000 - 0x99c01ff7 com.apple.Accelerate 1.6 (Accelerate 1.6) <3891A689-4F38-FACD-38B2-4BF937DE30CF> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate > 0x99c02000 - 0x99c07ff7 com.apple.OpenDirectory 10.6 (10.6) <7E8AFE74-1FA9-7B35-A0E3-545959A9CA73> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory > 0x99c46000 - 0x99ce3fe3 com.apple.LaunchServices 362.3 (362.3) <15B47388-16C8-97DA-EEBB-1709E136169E> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices > 0x9a158000 - 0x9a15cff7 libGFXShared.dylib ??? (???) <09540618-2ED1-72C4-61CB-938B35927568> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib > 0x9a16e000 - 0x9a16eff7 com.apple.Cocoa 6.6 (???) <5A785062-1ABB-2A54-BAAC-8FEF95275E05> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa > 0x9a16f000 - 0x9a263ff7 libiconv.2.dylib 7.0.0 (compatibility 7.0.0) <475AEF89-91A5-5100-8662-DA508D3830E9> /usr/lib/libiconv.2.dylib > 0x9a441000 - 0x9a47eff7 com.apple.SystemConfiguration 1.10.8 (1.10.2) <50E4D49B-4F61-446F-1C21-1B2BA814713D> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration > 0x9a47f000 - 0x9a4b2fff libTrueTypeScaler.dylib ??? (???) <8ADB7D19-413E-4499-C874-13C383F97685> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib > 0x9a4fc000 - 0x9a6a3ff7 libSystem.B.dylib 125.2.11 (compatibility 1.0.0) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib > 0x9a6a4000 - 0x9a6b1ff7 com.apple.NetFS 3.2.2 (3.2.2) <0A53CD10-DBC7-2BE8-34F7-354BE201F6FB> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS > 0x9a6b2000 - 0x9a6ecff7 libcups.2.dylib 2.8.0 (compatibility 2.0.0) <A6C207E3-7B42-926D-9C93-BE3F50B92496> /usr/lib/libcups.2.dylib > 0x9a6ed000 - 0x9a7a9fff com.apple.ColorSync 4.6.8 (4.6.8) <920DD017-8B41-7334-E554-A85DB99EBD5A> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync > 0x9a7aa000 - 0x9abc0ff7 libBLAS.dylib 219.0.0 (compatibility 1.0.0) <9D89FCB3-24C9-8FCF-DB49-27B184AC3222> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib > 0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib > > Model: MacPro4,1, BootROM MP41.0081.B07, 8 processors, Quad-Core Intel Xeon, 2.26 GHz, 12 GB, SMC 1.39f5 > Graphics: NVIDIA GeForce GT 120, NVIDIA GeForce GT 120, PCIe, 512 MB > Memory Module: global_name > AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8E), Broadcom BCM43xx 1.0 (5.10.131.42.4) > Bluetooth: Version 2.4.5f3, 2 service, 19 devices, 1 incoming serial ports > Network Service: Ethernet, Ethernet, en0 > PCI Card: NVIDIA GeForce GT 120, sppci_displaycontroller, Slot-1 > Serial ATA Device: HL-DT-ST DVD-RW GH41N, 283.3 MB > Serial ATA Device: WDC WD1001FALS-41K1B0, 931.51 GB > USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1006, 0xfd300000 / 2 > USB Device: Apple Optical USB Mouse, 0x05ac (Apple Inc.), 0x0304, 0xfd330000 / 4 > USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x0220, 0xfd320000 / 3 > USB Device: USB 3.0 SATA Bridge, 0x2109 (VIA Labs, Inc.), 0x0700, 0xfa200000 / 2 > USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x5a100000 / 2 > USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8215, 0x5a110000 / 3 > FireWire Device: built-in_hub, Up to 800 Mb/sec > > > Jon Wieser > jonwieser(a)netzero.com > > "When the going gets tough, switch to power tools." - Red Green > > ---------- Original Message ---------- > From: Bruce Fischl <fischl(a)nmr.mgh.harvard.edu> > To: "jonwieser(a)netzero.net" <jonwieser(a)netzero.net> > Cc: freesurfer(a)nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] tksurfer - rotate surface with mouse > Date: Fri, 11 Jan 2013 09:00:27 -0500 (EST) > > Hi Jon > > glad to see you are now able to post :>. No, I don't think you can do > this in tksurfer due to its age and slow redraw rate. Freeview can do it > though. > > cheers > Bruce > On Fri, 11 Jan 2013, jonwieser(a)netzero.net wrote: > >> >> Is it possible to rotate the surface model in tksurfer >> with the mouse instead of the rotation buttons on the GUI. (i.e. grab the surface model >> with the mouse and spin it) >> >> Jon Wieser >> jonwieser(a)netzero.com >> >> "When the going gets tough, switch to power tools." - Red Green >> >> ____________________________________________________________ >> NetZero now offers 4G mobile broadband. Sign up now. >> http://www.netzero.net/?refcd=NZINTISP0512T4GOUT1 >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer(a)nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail. > > > ____________________________________________________________ > Woman is 53 But Looks 25 > Mom reveals 1 simple wrinkle trick that has angered doctors... > http://thirdpartyoffers.netzero.net/TGL3241/50f02f62991ae2f623b62st01duc > > >

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tksurfer - rotate surface with mouse
by jonwieser＠netzero.net 11 Jan '13

11 Jan '13

Is it possible to rotate the surface model in tksurfer with the mouse instead of the rotation buttons on the GUI. (i.e. grab the surface model with the mouse and spin it) Jon Wieser jonwieser(a)netzero.com "When the going gets tough, switch to power tools." - Red Green ____________________________________________________________ NetZero now offers 4G mobile broadband. Sign up now. http://www.netzero.net/?refcd=NZINTISP0512T4GOUT1

2 1

recon-all error
by ZhiLiangLong 10 Jan '13

10 Jan '13

Hi everyone: I am using freesurfer 5.1.0 to run my own data to compute cortical thickness in VirtualBox. When it runs the command: "mri_aparc2aseg --s chong_lan --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz ", it got errors("mghRead(/mnt/hgfs/DATA/Freesurfer/chong_lan/mri/aparc+aseg.mgz): could not read 262144 bytes at slice 184"). I have no idea how to make it correct. I need help. The detials are in the attachment.

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