Dear Bruce,
Thank you. Now its working fine.
On Thu, Nov 30, 2017 at 3:46 PM, Ramesh Babu mgrameshbabu2013@gmail.com wrote:
Dear Bruce, Thank you very much for reply.
I have to link fsavarage also. Because recently I have formated my system, the link between freesurfer and fsaverage is broken. I hope following link will be the correct one. If not please correct me.
ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
On Wed, Nov 29, 2017 at 8:38 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
if you have two dirs, dir1 and dir2, with a set of subjects in each (subjects1 and subjects2), you would do:
cd $dir2 foreach s ($subjects1) ln -s $dir1/$s end
then all your subjects will be listed in dir2
that should do the trick
On Wed, 29 Nov 2017, Ramesh Babu wrote:
Dear Bruce,
Thank for your reply. I am getting confusion in creating symlink. ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/ ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
Please let me know how to create symbolic link?
Thank you Ramesh
On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl < fischl@nmr.mgh.harvard.edu> wrote: Hi Ramesh
probably easiest to symlink them cheers Bruce On Tue, 28 Nov 2017, Ramesh Babu wrote: Hi, I have done recon-all -all processing for 2 groups inseparate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge?
Thanks in advance RB
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.