Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge?
Thanks in advance RB
Hi Ramesh
probably easiest to symlink them
cheers Bruce On Tue, 28 Nov 2017, Ramesh Babu wrote:
Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge?
Thanks in advance RB
Dear Bruce,
Thank for your reply. I am getting confusion in creating symlink. ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/ ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
Please let me know how to create symbolic link?
Thank you Ramesh
On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ramesh
probably easiest to symlink them
cheers Bruce
On Tue, 28 Nov 2017, Ramesh Babu wrote:
Hi, I have done recon-all -all processing for 2 groups in separate
subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge?
Thanks in advance RB
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if you have two dirs, dir1 and dir2, with a set of subjects in each (subjects1 and subjects2), you would do:
cd $dir2 foreach s ($subjects1) ln -s $dir1/$s end
then all your subjects will be listed in dir2
that should do the trick On Wed, 29 Nov 2017, Ramesh Babu wrote:
Dear Bruce,
Thank for your reply. I am getting confusion in creating symlink. ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/ ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
Please let me know how to create symbolic link?
Thank you Ramesh
On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Ramesh
probably easiest to symlink them cheers Bruce On Tue, 28 Nov 2017, Ramesh Babu wrote: Hi, I have done recon-all -all processing for 2 groups in separate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge? Thanks in advance RB
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Bruce, Thank you very much for reply.
I have to link fsavarage also. Because recently I have formated my system, the link between freesurfer and fsaverage is broken. I hope following link will be the correct one. If not please correct me.
ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
On Wed, Nov 29, 2017 at 8:38 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
if you have two dirs, dir1 and dir2, with a set of subjects in each (subjects1 and subjects2), you would do:
cd $dir2 foreach s ($subjects1) ln -s $dir1/$s end
then all your subjects will be listed in dir2
that should do the trick
On Wed, 29 Nov 2017, Ramesh Babu wrote:
Dear Bruce,
Thank for your reply. I am getting confusion in creating symlink. ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/ ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
Please let me know how to create symbolic link?
Thank you Ramesh
On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Ramesh
probably easiest to symlink them cheers Bruce On Tue, 28 Nov 2017, Ramesh Babu wrote: Hi, I have done recon-all -all processing for 2 groups inseparate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge?
Thanks in advance RB
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Dear Bruce,
Thank you. Now its working fine.
On Thu, Nov 30, 2017 at 3:46 PM, Ramesh Babu mgrameshbabu2013@gmail.com wrote:
Dear Bruce, Thank you very much for reply.
I have to link fsavarage also. Because recently I have formated my system, the link between freesurfer and fsaverage is broken. I hope following link will be the correct one. If not please correct me.
ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
On Wed, Nov 29, 2017 at 8:38 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
if you have two dirs, dir1 and dir2, with a set of subjects in each (subjects1 and subjects2), you would do:
cd $dir2 foreach s ($subjects1) ln -s $dir1/$s end
then all your subjects will be listed in dir2
that should do the trick
On Wed, 29 Nov 2017, Ramesh Babu wrote:
Dear Bruce,
Thank for your reply. I am getting confusion in creating symlink. ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/ ln -s /usr/local/freesurfer/subjects/fsaverage /mnt/backup_data/freesurfer_analysis/subjects/fsaverage
Please let me know how to create symbolic link?
Thank you Ramesh
On Tue, Nov 28, 2017 at 8:27 PM, Bruce Fischl < fischl@nmr.mgh.harvard.edu> wrote: Hi Ramesh
probably easiest to symlink them cheers Bruce On Tue, 28 Nov 2017, Ramesh Babu wrote: Hi, I have done recon-all -all processing for 2 groups inseparate subjects directories. I want to put all subjects in one dkirectory. Should I copy paste all subject’s folders in one directory or is there any others steps to merge?
Thanks in advance RB
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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