External Email - Use Caution
The ‘\’ in your command is causing the error. Remove them from your command line if you have everything in the same line.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 10:14 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Smoothing with surf2surf
External Email - Use Caution Hi I have tried doing this on both version 6.0 and 7.2 and both versions show the same error
On 30 May 2023, at 14:13, Huang, Yujing <YHUANG43@MGH.HARVARD.EDUmailto:YHUANG43@MGH.HARVARD.EDU> wrote:
External Email - Use Caution
I’m wondering the Freesurfer version you are using.
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Akansha Mahesh Naraindas Sent: Tuesday, May 30, 2023 8:22 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Smoothing with surf2surf
External Email - Use Caution Hi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this.
My command is as follows
mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --cortex \ --tval combatlh.thickness.fwhm10.fsaverage.mgh
I get this error ERROR: Option --sval unknown
Based on other posts on the mailing list I tried specifying the src and trg subjects but still receive the following error:
mri_surf2surf --hemi lh \ --srcsubject fsaverage \ --srcsurfval combat_lh-1004.thickness.fwhm0.fsaverage.mgh \ --fwhm 10 \ --trgsurfval combatlh.thickness.fwhm10.fsaverage.mgh
ERROR: Option --srcsubject unknown
I was wondering if you might be able to help resolve this issue
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