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Dear MA Please download the latest dev version and the command will be there Cheers Eugenio
Sent from my phone, please excuse brevity and typos
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández miguelrivasfdez@gmail.com Sent: Tuesday, September 11, 2018 12:20:55 PM To: Freesurfer support list Subject: [Freesurfer] Amygdala subfields segmentation
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Hi Freesurfer developes,
I am trying to execute the hippocampal and amygdala segmentation command " segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 [SUBJECTS_DIR]" but freesurfer gave to me this error command not found.
However, when I use the command that segment only the hippocampal subfields (recon-all -s <subject_name> -hippocampal-subfields-T2 <file name of additional scan> <analysisID>) I don´t have any problem.
What would be the reason?
Thanks in advance.
Best,
-- Miguel Ángel Rivas Fernández