Dear all,
FreeSurfer BIDS App is now available on the OpenNeuro.org platform. This means that you can run recon-all on your datasets (with longitudinal pipeline and study specific template estimation) in the cloud for free (see example results here https://openneuro.org/datasets/ds000108/versions/00001?app=FreeSurfer&version=17&job=cc304a0c-860d-479f-b79c-e2467f79e6a1 ).
You can learn more about OpenNeuro.org in the FAQ https://openneuro.org/faq and about the details of the FreeSurfer BIDS App here https://github.com/BIDS-Apps/freesurfer.
Let us know if you have any questions!
Best, The OpenNeuro Team
PS If you are developing a neuroimaging pipeline and would like to host it on OpenNeuro.org please get in touch. We a non-profit project dedicated to enabling access to cutting edge neuroimaging methods and incentivizing data sharing.