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Hello FreeSurfer experts,
I'm attempting to follow the longitudinal pipeline, as described on the longitudinal processing tutorial (https://secure-web.cisco.com/1vfvhhwIW62eUqagABMhB_WTdPL428NuWWIuhlLA1wradeu...), while creating a within-subject template, I get the following error when I run this command:
recon-all -base Subj03_template -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TO/Subj03_TO.nii -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TS/Subj03_TS.nii -all
error: mghRead(/Users/bernis/Calismalar/results/Subj03_TS.nii/mri/rawavg.mgz, -1): could not open file
Does anyone have any idea how I can resolve this problem?
1) FreeSurfer version: v7.2.0 2) Platform: MacOS Big Sur release 11.6.7 3) recon-all.log: see attached
Best regards,
[https://secure-web.cisco.com/1FcV40hswwSeEl9bym6WfCPck8eyt1yR9LF87hH45tP9coW...]https://secure-web.cisco.com/1gg-VeXoq9W6DUMYRFkUMcIADYHC7qN0RuiQhEnLA0K-N7FkhQpt73nBB0hqvWCfTcnzLJJUHPTFop1ByTQgbB7ncr4Th2ZaMh4TWV1eWez6IdsSLlLm39N1C9nKyqasiAf0MfpForwWuNq6Y-1L15KX4uTnLbpVMxHrASxaXMPKaPtWqN09MwGuHZekFcF0RlBsMg1oU5Ii8ut-IuLNWw9Cc_h1elCxs2O9EYsTMje0YWmjbzB46XIDfbKu7hK49UwOHk3A_MpEdxhIYpY5YRKZ7zhr1jJWy_-_oXD7XHSPjzGWVeD7sSVBsX5lH4D0IIaPSAediUQbswmH3mzyLhw/https%3A%2F%2Fwww.acibadem.edu.tr%2F
Bernis Sütçübaşı Assist. Prof. Faculty of Humanities and Social Sciences/Department of Psychology
Kerem Aydınlar Kampüsü Kayışdağı Cad. 32 Ataşehir 34752 İstanbul Tel 0 216 500 36 05
