External Email - Use Caution

The argument to -tp should be the cross subject (run earlier with recon-all), not the input volume

On 8/1/2023 4:58 AM, Bernis SÜTÇÜBAŞI wrote:

External Email - Use Caution

Hello FreeSurfer experts,

I'm attempting to follow the longitudinal pipeline, as described on the longitudinal processing tutorial (*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1lYjI_vtr6Cq_4q9rzjkRR5REco07fs7QIwVWME4IMDS045... https://secure-web.cisco.com/1vfvhhwIW62eUqagABMhB_WTdPL428NuWWIuhlLA1wradeuw0s2ojnD8IvCB-0fL80s5FWT9oOODXD26Oz-H13kTKqy1ut8IbbqQiG81lVKLr-3z_w68anmwIsuUdWmG_OJpkZywCJN3-PnEybXNPicGdmeGiNpWYGED9REmas2OeqARXipaxpk7sDOBTWl4YLCKpGPjPI1eAirqsi24HMVw7Gx5MbrOvsS_q2k_dbthdVmHrXlSVCgo44QKin8AM_5IMNgiY-bNB2fITmWWYonH3C4joOgKrLWbRnDVsUE2aptIIoBuXudGluHXuFgr3tfpwPl51pH8DrnSuHNzHHg/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FLongitudinalTutorial_tktools), while creating a within-subject template, I get the following error when I run this command:

recon-all -base Subj03_template -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TO/Subj03_TO.nii -tp /Users/bernis/Calismalar/results/Subj03/Subj03_TS/Subj03_TS.nii -all

error: mghRead(/Users/bernis/Calismalar/results/Subj03_TS.nii/mri/rawavg.mgz, -1): could not open file

Does anyone have any idea how I can resolve this problem?

1. FreeSurfer version: v7.2.0

2. Platform: MacOS Big Sur release 11.6.7

3. recon-all.log: see attached

Best regards,

*https://secure-web.cisco.com/1KmmKM2Zk9rx033u4iU-Fsiae_Xm_D9G_CeeOZqDi8K8u0D... https://secure-web.cisco.com/1gg-VeXoq9W6DUMYRFkUMcIADYHC7qN0RuiQhEnLA0K-N7FkhQpt73nBB0hqvWCfTcnzLJJUHPTFop1ByTQgbB7ncr4Th2ZaMh4TWV1eWez6IdsSLlLm39N1C9nKyqasiAf0MfpForwWuNq6Y-1L15KX4uTnLbpVMxHrASxaXMPKaPtWqN09MwGuHZekFcF0RlBsMg1oU5Ii8ut-IuLNWw9Cc_h1elCxs2O9EYsTMje0YWmjbzB46XIDfbKu7hK49UwOHk3A_MpEdxhIYpY5YRKZ7zhr1jJWy_-_oXD7XHSPjzGWVeD7sSVBsX5lH4D0IIaPSAediUQbswmH3mzyLhw/https%3A%2F%2Fwww.acibadem.edu.tr%2F**

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*Bernis Sütçübaşı** **Assist. Prof. ** **Faculty of Humanities and Social Sciences/Department of Psychology**

**Kerem Aydınlar Kampüsü Kayışdağı Cad. 32 Ataşehir 34752 İstanbul** **Tel 0 216 500 36 05***

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