Hi Bruce and Sita:
Thanks for your relay. And Here are the images.
Jing
From: Jing Ming [mj_coming@hotmail.com]
Sent: Thursday, September 15, 2011 7:31 PM
To: Vy Dinh
Subject: FW: [Freesurfer] manual editting problem
CC: mj_coming@hotmail.com; jennifer_g_goldman@rush.edu; vydinh@rush.edu; freesurfer@nmr.mgh.harvard.edu
From: fischl@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] manual editting problem
Date: Thu, 15 Sep 2011 20:07:41 -0400
To: sita@nmr.mgh.harvard.edu
Can you send an image?
On Sep 15, 2011, at 6:38 PM, Sita Kakunoori sita@nmr.mgh.harvard.edu wrote:
How does the wm.mgz look. Correcting the white surface will correct the
pial surface as well.
Sita.
On Thu, 15 Sep 2011, Jing Ming wrote:
Hi Surfers:
We have been coming
across several gray matter regions that are not included within the pial
surface (red line) when it should be (e.g., very anterior parts of the
temporal lobe). From my understanding of similar posts on the forum, it
seems that there isn't a way to add this region to the pial surface so
that the missing brain matter is included. We have tried using the clone
tool to fill in this region, as per the tutorial and have experimented
with this tool using the tutorial data. I followed the steps in the
tutorial but could not observe any changes when the middle button was
selected. Does anyone have any ideas on how to troubleshoot this
issue? Can someone please explain to me why this is not possible? Also
how does Freesurfer determine what regions to include within the pial
surface? If there is a way that has been developed recently, please
enlighten me.
-Jing
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