Hi Xin,
Are you using the QA tools from https://surfer.nmr.mgh.harvard.edu/fswiki/QATools? Those are specific to FS 5.3 (we should update the wiki). v7.1 includes an executable named `qatools.py` that functions similarly.
best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Xin Qi xinqi2000@gmail.com Date: Thursday, August 12, 2021 at 12:00 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] about FreeSurfer QA tools errors
External Email - Use Caution Hi Freesurfer Community Support Team:
We would like to use FreeSurfer QA tools.
After installing it, I tested it on one subject that finished Freesurfer recon-all processing using the latest FreeSurfer 7.1. but got errors that seem many files are missing in the mri, surf, stat folders created by FreeSurfer.
I attach the recon_checker summary log and zipped snaps file for your reference.
Looking forward to hearing from you. Thank you very much.
Best regards Xin