Hi Christiane,
What do you mean when you say that you get the old path with getmatlab?
In any case, the error seems not related to a matlab path issue. Can you please attach the entire log?
Marie
On Nov 18, 2013, at 12:03 AM, "Jockwitz, Christiane" <c.jockwitz@fz-juelich.demailto:c.jockwitz@fz-juelich.de> wrote:
Dear Freesurfer experts,
I tried to run the local GI command recon-all –s –localGI and got the following error message:
??? Undefined function or method 'make_outer_surface' for input arguments of
type 'char'.
From earlier post I tried to fix the problem by changing the matlabpath like this:
setenv MATLABPATH /directory/bin
setenv PATH ${MATLABPATH}/bin:${PATH}
However, if I then check the path via „getmatlab“ I still get the old path. Did I do something wrong? And is it right to set up my matlabpath to the matlab/bin folder?
The scripts like make_outer_surface.m are located in the freesurfer/matlab directory. Or does the path have to point to the scripts directly?
Thank you very much in advance
Kind regards, Christiane
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