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Hi,
Reposting this message as I do not see this in the FS archives. Any help would be appreciated.
Thanks, Dr. Rakshathi Basavaraju (M.D. Psychiatry) Assistant Professor (Department of Health Research-sponsored return-home research fellowship) Principal Investigator - OPCINSS Department of Psychiatry National Institute of Mental Health and Neurosciences (NIMHANS) Bengaluru, Karnataka, India-560029 Phone: +91-9480829898/+91-80-26972156/+91-80-26995320
---------- Forwarded message --------- From: Rakshathi Basavaraju rakshathi.b@gmail.com Date: Fri, Jan 27, 2023 at 3:46 PM Subject: A doubt regarding autorecon after watershedding To: Freesurfer@nmr.mgh.harvard.edu
Dear FS, I intend to examine cortical thickness correlates of negative symptoms in my schizophrenia sample. I ran recon-all and corrected a few brainmasks which were excessively stripped by watershedding with different h values (ran autorecon-pial for those watershedded). I am attaching a few screenshots of scans where the segmentation is erroneous and the aseg omits the right temporal and parietal or cerebellar regions. How do I set this right?
[image: Screenshot 2023-01-27 at 3.37.46 PM.png] [image: Screenshot 2023-01-27 at 3.29.47 PM.png][image: Screenshot 2023-01-27 at 3.26.29 PM.png][image: Screenshot 2023-01-27 at 3.32.08 PM.png]
Dr. Rakshathi Basavaraju (M.D. Psychiatry) Assistant Professor (Department of Health Research-sponsored return-home research fellowship) Principal Investigator - OPCINSS Department of Psychiatry National Institute of Mental Health and Neurosciences (NIMHANS) Bengaluru, Karnataka, India-560029 Phone: +91-9480829898/+91-80-26972156/+91-80-26995320
