Try removing -ba_labels (it will do that with -all anyway)
On 9/29/15 9:02 PM, 葉丁瑞 wrote:
Dear All,
I ran the following script: recon-all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s S002_ba -sd /Volumes/yang/S002_AD1118_20090116/ -all -ba_labels and got the error below at the end. Could anybody please let me know how to fix it.
SUBJECTS_DIR /Volumes/yang/S002_AD1118_20090116
FREESURFER_HOME /Applications/freesurfer
Loading source label.
No such file or directory
ERROR reading /Volumes/yang/S002_AD1118_20090116/fsaverage/label/lh.BA1.label
Darwin MRI2deiMac.local 13.4.0 Darwin Kernel Version 13.4.0: Wed Mar 18 16:20:14 PDT 2015; root:xnu-2422.115.14~1/RELEASE_X86_64 x86_64
recon-all -s S002 exited with ERRORS at Sat Sep 26 21:57:00 CST 2015
For more details, see the log file /Volumes/yang/S002_AD1118_20090116/S002/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I follow the below step at freesurfer message board cd /Volume/yang
ln -s /Applications/freesurfer/subjects/fsaverage
recon-all -i /Volumes/yang/S002_AD1118_20090116/NCKU-0003-0000-00001.dcm -s S002_ba -sd /Volumes/yang/S002_AD1118_20090116/ -all -ba_labels but the error is not resoled.please see attached file below my environment for Freesurfer/FS-FAST
-------- freesurfer-Darwin-lion-stable-pub-v5.3.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer
FSFAST_HOME /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/subjects
MNI_DIR /Applications/freesurfer/mni
FSL_DIR /usr/local/fsl
Thank you,
TING-JUI YEH
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer