Sure. I should add that because the method is sequence agnostic doesn’t mean the results won’t be biased by differences in contrast in the input sequence.
Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of AJ Sent: Saturday, November 27, 2021 11:03 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] SynthSeg
External Email - Use Caution Many thanks. Best AJ
On Sat, Nov 27, 2021, 20:04 Fischl, Bruce <BFISCHL@mgh.harvard.edumailto:BFISCHL@mgh.harvard.edu> wrote: Sorry, what is the “sb” in sbTIV? I’m sure you can use it from samseg, or just use samseg for the segmentation as well if you want, since it is agnostic with respect to MRI sequence as well. Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of AJ Sent: Saturday, November 27, 2021 10:03 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] SynthSeg
External Email - Use Caution Hi Thank you for your help. I ran SynthSeg successfully. How do you derive sbTIV value ? Could one use sbTIV from SAMSEG?
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