External Email - Use Caution
Dott. Massimo VALERIO
Neuropsichiatra Infantile SSD Neurologia Pediatrica Dipartimento di Patologia e Cura del Bambino Regina Margherita A.O.U Citta della Salute e della Scienza della Citta di Torino Presidio Ospedale Infantile Regina Margherita Piazza Polonia 94, 10126 Torino Tel: 011 3135248 Fax: 011 3135439 Email: massimo.valerio@unito.it
Il giorno dom 8 ott 2023 alle ore 16:22 Massimo Valerio < massimo.valerio@unito.it> ha scritto:
Hello FreeSurfer Developers,
I'm attempting to compute the recon-all of T1 3D of my patient. ERROR:
\n mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /Applications/freesurfer/subjects/PZDALENE/mri/transforms/cc_up.lta PZDALENE \n
will read input aseg from aseg.auto_noCCseg.mgz
writing aseg with cc labels to aseg.auto.mgz
will write lta as /Applications/freesurfer/subjects/PZDALENE/mri/transforms/cc_up.lta
reading aseg from /Applications/freesurfer/subjects/PZDALENE/mri/aseg.auto_noCCseg.mgz
reading norm from /Applications/freesurfer/subjects/PZDALENE/mri/norm.mgz
39269 voxels in left wm, 29817 in right wm, xrange [112, 141]
searching rotation angles z=[-7 7], y=[ 9 23]
searching scale 1 Z rot 5.0 global minimum found at slice 127.0, rotations (14.74, -1.72)
final transformation (x=127.0, yr=14.745, zr=-1.723):
0.96663 0.03006 0.25439 -31.60547;
-0.02907 0.99955 -0.00765 15.74752;
-0.25451 0.00000 0.96707 33.63651;
0.00000 0.00000 0.00000 1.00000;
mri_cc: no WM voxels found with norm > 40 -- check skull stripping
No such file or directory
Darwin MBPdiNeirurgia4.fritz.box 21.6.0 Darwin Kernel Version 21.6.0: Fri Sep 15 16:17:23 PDT 2023; root:xnu-8020.240.18.703.5~1/RELEASE_X86_64 x86_64
recon-all -s PZDALENE exited with ERRORS at Sun Oct 8 02:34:07 CEST 2023
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
- FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
- Platform: MacOs Monterey 12.7
- uname -a: Darwin MBPdiNeirurgia4.fritz.box 21.6.0 Darwin Kernel
Version 21.6.0: Fri Sep 15 16:17:23 PDT 2023; root:xnu-8020.240.18.703.5~1/RELEASE_X86_64 x86_64 4) recon-all.log: see attached
Dott. Massimo VALERIO
Neuropsichiatra Infantile SSD Neurologia Pediatrica Dipartimento di Patologia e Cura del Bambino Regina Margherita A.O.U Citta della Salute e della Scienza della Citta di Torino Presidio Ospedale Infantile Regina Margherita Piazza Polonia 94, 10126 Torino Tel: 011 3135248 Fax: 011 3135439 Email: massimo.valerio@unito.it
https://secure-web.cisco.com/1NNui4wxv6m_TmgOnzlJg9RYl5qaN4AkQ33H4VEWmLcrOoV6OGrmUnYHpzwVNDut64zzu_oV-_snKFvoTqtuL4sdAVqG-4TrNAqNComNH6ACsKy05dMoqKZmQaI_HZeuxGjVzTb4KreRcrG2DTxhr56MK0ToxehKztPR_0zt3xjC78WpEZm1TquTwp-5KEV82YmGADAq4lUWWlkly0Q7JfX_zjXfz2O3l_G4CzMPT-vvu4oZxo3jEshhtZaVH8aBx08_iYs4wIezLhziNdD25nakbPD_ZdmqAbNXGH_Etylx-j3nxbG2yqCtys5t_bOXnj7xo5l4-K5tUUoESXOKoRA/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail Privo di virus.http://secure-web.cisco.com/1sOwZmGRpeVGH_FSbs-TgSzvLT2A8yzMOa_UqlXrzMzsXLFy... https://secure-web.cisco.com/1NNui4wxv6m_TmgOnzlJg9RYl5qaN4AkQ33H4VEWmLcrOoV6OGrmUnYHpzwVNDut64zzu_oV-_snKFvoTqtuL4sdAVqG-4TrNAqNComNH6ACsKy05dMoqKZmQaI_HZeuxGjVzTb4KreRcrG2DTxhr56MK0ToxehKztPR_0zt3xjC78WpEZm1TquTwp-5KEV82YmGADAq4lUWWlkly0Q7JfX_zjXfz2O3l_G4CzMPT-vvu4oZxo3jEshhtZaVH8aBx08_iYs4wIezLhziNdD25nakbPD_ZdmqAbNXGH_Etylx-j3nxbG2yqCtys5t_bOXnj7xo5l4-K5tUUoESXOKoRA/https%3A%2F%2Fwww.avast.com%2Fsig-email%3Futm_medium%3Demail%26utm_source%3Dlink%26utm_campaign%3Dsig-email%26utm_content%3Dwebmail <#m_-8264439549155417804_m_3222428717412999766_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>